mRNA_F-serratus_M_contig684.17892.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig684.17892.1
Unique NamemRNA_F-serratus_M_contig684.17892.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig684.17892.1 vs. uniprot
Match: A0A6H5L6B5_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6B5_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 2.810e-34
Identity = 59/78 (75.64%), Postives = 70/78 (89.74%), Query Frame = 3
Query:    3 IRETGEKWSIGFVALAIMAIVGHTTMSYGFSVAGERLTRRLREIAFKAILRHDVGWFDKDKNSVGTLTTNLEEDSAKV 236
            +R  GEKWS+GFV LA +AIVGH TM+YGFSVAGERLTRRLREI F+AILRHD+GWFDK++N+VG LTT LEED+AK+
Sbjct:  454 VRSVGEKWSLGFVGLAAVAIVGHCTMAYGFSVAGERLTRRLREIGFRAILRHDIGWFDKEENAVGALTTQLEEDTAKI 531          
BLAST of mRNA_F-serratus_M_contig684.17892.1 vs. uniprot
Match: D8LS12_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS12_ECTSI)

HSP 1 Score: 131 bits (329), Expect = 9.730e-34
Identity = 59/78 (75.64%), Postives = 69/78 (88.46%), Query Frame = 3
Query:    3 IRETGEKWSIGFVALAIMAIVGHTTMSYGFSVAGERLTRRLREIAFKAILRHDVGWFDKDKNSVGTLTTNLEEDSAKV 236
            +R  GEKWS+GFV LA +AIVGH  M+YGFSVAGERLTRRLREI F+AILRHD+GWFDK++N+VG LTT LEED+AKV
Sbjct:  769 VRSVGEKWSLGFVGLAAVAIVGHCAMAYGFSVAGERLTRRLREIGFRAILRHDIGWFDKEENAVGALTTQLEEDTAKV 846          
BLAST of mRNA_F-serratus_M_contig684.17892.1 vs. uniprot
Match: A0A836CDG9_9STRA (ATP-binding cassette, sub-family B, member 1A n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDG9_9STRA)

HSP 1 Score: 105 bits (261), Expect = 1.480e-24
Identity = 46/77 (59.74%), Postives = 59/77 (76.62%), Query Frame = 3
Query:    6 RETGEKWSIGFVALAIMAIVGHTTMSYGFSVAGERLTRRLREIAFKAILRHDVGWFDKDKNSVGTLTTNLEEDSAKV 236
            RETG  W++GFV LA+ A  GH  +++GF+ +GER+ RRLRE AF AI+RHD+GWFD D+NS G LTT LEED+  V
Sbjct:  688 RETGNWWALGFVFLALAAFCGHIALAWGFATSGERMVRRLRESAFTAIVRHDIGWFDFDENSTGALTTRLEEDANAV 764          
BLAST of mRNA_F-serratus_M_contig684.17892.1 vs. uniprot
Match: A0A836CNL1_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNL1_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 2.170e-22
Identity = 43/76 (56.58%), Postives = 59/76 (77.63%), Query Frame = 3
Query:    3 IRETGEKWSIGFVALAIMAIVGHTTMSYGFSVAGERLTRRLREIAFKAILRHDVGWFDKDKNSVGTLTTNLEEDSA 230
            I++ G  W + FV LA   +VGH   + GF+V+GERLTRR+RE+AFKAILRHD+GWFD  +++VG LTT+LE D++
Sbjct:  980 IQDKGYDWVLAFVGLAASTVVGHVIEALGFAVSGERLTRRMREMAFKAILRHDIGWFDNAEHAVGVLTTSLEADAS 1055          
BLAST of mRNA_F-serratus_M_contig684.17892.1 vs. uniprot
Match: A0A836CGZ9_9STRA (ATP-binding cassette, sub-family B, member 1A n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGZ9_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 5.490e-22
Identity = 43/74 (58.11%), Postives = 56/74 (75.68%), Query Frame = 3
Query:    6 RETGEKWSIGFVALAIMAIVGHTTMSYGFSVAGERLTRRLREIAFKAILRHDVGWFDKDKNSVGTLTTNLEEDS 227
            R TG  W++GFV LAI A VGH  ++ GFS +GER+ RRLRE AF AI+RHD+GWFD ++++ G LT  LEED+
Sbjct:  681 RRTGHLWTLGFVFLAIAATVGHLMLAAGFSTSGERMVRRLRETAFAAIVRHDIGWFDFEEHATGVLTGRLEEDA 754          
BLAST of mRNA_F-serratus_M_contig684.17892.1 vs. uniprot
Match: A0A6H5J5U8_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5U8_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 3.520e-21
Identity = 39/77 (50.65%), Postives = 61/77 (79.22%), Query Frame = 3
Query:    6 RETGEKWSIGFVALAIMAIVGHTTMSYGFSVAGERLTRRLREIAFKAILRHDVGWFDKDKNSVGTLTTNLEEDSAKV 236
            R  G +W++GFV L + A+VG+  +S GF+VAGER+TR LR++AF+A++RHD+ WFDK+ ++VG LT+ LE +++ V
Sbjct:  646 RTIGNRWALGFVGLGLTALVGNFVLSTGFAVAGERMTRTLRKMAFEAMVRHDISWFDKESSAVGILTSRLESEASMV 722          
BLAST of mRNA_F-serratus_M_contig684.17892.1 vs. uniprot
Match: D7FHL1_ECTSI (ATP-binding cassette, sub-family B (MDR/TAP), member 1A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHL1_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 2.300e-20
Identity = 38/77 (49.35%), Postives = 60/77 (77.92%), Query Frame = 3
Query:    6 RETGEKWSIGFVALAIMAIVGHTTMSYGFSVAGERLTRRLREIAFKAILRHDVGWFDKDKNSVGTLTTNLEEDSAKV 236
            R+ G +W++GFV L  + +VG+  +S GF+V+GERLTR LR +AF+A++RHD+ WFD++ ++VG LTT LE +++ V
Sbjct:  752 RKIGNRWALGFVGLGFLNLVGNMALSTGFTVSGERLTRTLRYMAFEAMVRHDIAWFDEESSAVGVLTTRLEAEASMV 828          
BLAST of mRNA_F-serratus_M_contig684.17892.1 vs. uniprot
Match: A0A835Z4J1_9STRA (ATP-binding cassette, sub-family B, member 1A n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4J1_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 4.300e-20
Identity = 40/76 (52.63%), Postives = 57/76 (75.00%), Query Frame = 3
Query:    3 IRETGEKWSIGFVALAIMAIVGHTTMSYGFSVAGERLTRRLREIAFKAILRHDVGWFDKDKNSVGTLTTNLEEDSA 230
            I + G  W +GFV LA   ++G+  ++ GF+ +GER+TRRLR +AFKAI+RHDVGWFD +++S   LTTNLE D++
Sbjct:  824 ILDQGTSWVLGFVGLAGSTLLGNLMLTTGFATSGERMTRRLRGMAFKAIIRHDVGWFDAEEHSTAVLTTNLESDAS 899          
BLAST of mRNA_F-serratus_M_contig684.17892.1 vs. uniprot
Match: A0A024TYU1_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TYU1_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 4.060e-17
Identity = 37/77 (48.05%), Postives = 52/77 (67.53%), Query Frame = 3
Query:    6 RETGEKWSIGFVALAIMAIVGHTTMSYGFSVAGERLTRRLREIAFKAILRHDVGWFDKDKNSVGTLTTNLEEDSAKV 236
            R    KWS+GF+AL +  ++  T  ++ FS+  ERLT R+R +AF+A+LR D+GWFD  K+S G LTT L  DSA +
Sbjct:  745 RNEALKWSMGFIALGVSILIALTVQNHQFSIVCERLTSRIRGMAFQAMLRQDIGWFDDPKHSSGALTTRLATDSAAI 821          
BLAST of mRNA_F-serratus_M_contig684.17892.1 vs. uniprot
Match: A0A8K1CD49_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CD49_PYTOL)

HSP 1 Score: 81.6 bits (200), Expect = 2.560e-16
Identity = 36/69 (52.17%), Postives = 48/69 (69.57%), Query Frame = 3
Query:   24 WSIGFVALAIMAIVGHTTMSYGFSVAGERLTRRLREIAFKAILRHDVGWFDKDKNSVGTLTTNLEEDSA 230
            WS+GF+ L I+AI G T  +Y F V  +RLT R+R +AFKA+L  +V WFD+D+N+ G L T L  DSA
Sbjct:   53 WSVGFLVLGILAIAGMTLQNYAFGVVAQRLTSRVRLVAFKAMLHQEVSWFDQDENASGALVTRLATDSA 121          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig684.17892.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L6B5_9PHAE2.810e-3475.64ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D8LS12_ECTSI9.730e-3475.64Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A836CDG9_9STRA1.480e-2459.74ATP-binding cassette, sub-family B, member 1A n=1 ... [more]
A0A836CNL1_9STRA2.170e-2256.58P-loop containing nucleoside triphosphate hydrolas... [more]
A0A836CGZ9_9STRA5.490e-2258.11ATP-binding cassette, sub-family B, member 1A n=1 ... [more]
A0A6H5J5U8_9PHAE3.520e-2150.65ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D7FHL1_ECTSI2.300e-2049.35ATP-binding cassette, sub-family B (MDR/TAP), memb... [more]
A0A835Z4J1_9STRA4.300e-2052.63ATP-binding cassette, sub-family B, member 1A n=2 ... [more]
A0A024TYU1_9STRA4.060e-1748.05Uncharacterized protein n=3 Tax=Aphanomyces invada... [more]
A0A8K1CD49_PYTOL2.560e-1652.17Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig684contigF-serratus_M_contig684:164227..164942 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size240
Cds size240
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932089.346136-CDS-F-serratus_M_contig684:164226..1643241622932089.346136-CDS-F-serratus_M_contig684:164226..164324Fucus serratus maleCDSF-serratus_M_contig684 164227..164324 -
1690964141.6149251-CDS-F-serratus_M_contig684:164226..1643241690964141.6149251-CDS-F-serratus_M_contig684:164226..164324Fucus serratus maleCDSF-serratus_M_contig684 164227..164324 -
1622932089.3607383-CDS-F-serratus_M_contig684:164800..1649421622932089.3607383-CDS-F-serratus_M_contig684:164800..164942Fucus serratus maleCDSF-serratus_M_contig684 164801..164942 -
1690964141.6257913-CDS-F-serratus_M_contig684:164800..1649421690964141.6257913-CDS-F-serratus_M_contig684:164800..164942Fucus serratus maleCDSF-serratus_M_contig684 164801..164942 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig684.17892.1prot_F-serratus_M_contig684.17892.1Fucus serratus malepolypeptideF-serratus_M_contig684 164227..164942 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig684.17892.1

>prot_F-serratus_M_contig684.17892.1 ID=prot_F-serratus_M_contig684.17892.1|Name=mRNA_F-serratus_M_contig684.17892.1|organism=Fucus serratus male|type=polypeptide|length=80bp
RFAKRARSGLSASWRWLLWPSWDIQPCPTAFLSRGNGSRVAFVRSRSRPS
LGMTWAGSTRTRTPSVPLRPTSRKILPRY*
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mRNA from alignment at F-serratus_M_contig684:164227..164942-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig684.17892.1 ID=mRNA_F-serratus_M_contig684.17892.1|Name=mRNA_F-serratus_M_contig684.17892.1|organism=Fucus serratus male|type=mRNA|length=716bp|location=Sequence derived from alignment at F-serratus_M_contig684:164227..164942- (Fucus serratus male)
AGATTCGCGAAACGGGCGAGAAGTGGTCTATCGGCTTCGTGGCGCTGGCT ATTATGGCCATCGTGGGACATACAACCATGTCCTACGGCTTTTCTGTCGC GGGGGAACGGCTCACGCGTCGCCTTCGTGAGATCGCGTTCAAGTGAGTCT ACCCTTGGCGAGCGGCCGAACGTACACCTTCTCTAGGATGGTTCGCTCCA CAGTTTGTGTACTTTTGTCTACCTTTGGTGGAGTTGATACTCCTTGCTGC AAGATTTGTCTACTTACTACGCCGCAGCCGTGCGTCGCTAGCGATAGTCC TTACAAAGCGTAGGATGAAGACTTGTCGCGTTCTGCATGTTTTGCCGTGT CTAGTTGAGCATGTTACTTGTTTTTTGTCTCCCCCACCAGCGCCCGGGCC CTCTGACCTCTTGAGCGGCGTGGGGTGTGTAGAAATTGTCCACCCTCTAC CGTTAAGATACATGCAAAACCCGAAATAGTTTGCAACATGCACTTACGAG TGTTTATCGTTTCTTCATTGACGTATAACCCCCTTAAGTATTGCGTGGCT TGAAGCTCTCCCCCTCACCCCACCGACCAATCTCATACACCTACTGTGAT GATGAACAACTACATCAGGGCCATCCTTAGGCATGACGTGGGCTGGTTCG ACAAGGACAAGAACTCCGTCGGTACCCTTACGACCAACCTCGAGGAAGAT TCTGCCAAGGTACTGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig684:164227..164942-

>mRNA_F-serratus_M_contig684.17892.1 ID=mRNA_F-serratus_M_contig684.17892.1|Name=mRNA_F-serratus_M_contig684.17892.1|organism=Fucus serratus male|type=CDS|length=480bp|location=Sequence derived from alignment at F-serratus_M_contig684:164227..164942- (Fucus serratus male)
AGATTCGCGAAACGGGCGAGAAGTGGTCTATCGGCTTCGTGGCGCTGGCT
ATTATGGCCATCGTGGGACATACAACCATGTCCTACGGCTTTTCTGTCGC
GGGGGAACGGCTCACGCGTCGCCTTCGTGAGATCGCGTTCAAAGATTCGC
GAAACGGGCGAGAAGTGGTCTATCGGCTTCGTGGCGCTGGCTATTATGGC
CATCGTGGGACATACAACCATGTCCTACGGCTTTTCTGTCGCGGGGGAAC
GGCTCACGCGTCGCCTTCGTGAGATCGCGTTCAAGGCCATCCTTAGGCAT
GACGTGGGCTGGTTCGACAAGGACAAGAACTCCGTCGGTACCCTTACGAC
CAACCTCGAGGAAGATTCTGCCAAGGTACTGAGGCCATCCTTAGGCATGA
CGTGGGCTGGTTCGACAAGGACAAGAACTCCGTCGGTACCCTTACGACCA
ACCTCGAGGAAGATTCTGCCAAGGTACTGA
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