mRNA_F-serratus_M_contig680.17866.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig680.17866.1
Unique NamemRNA_F-serratus_M_contig680.17866.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig680.17866.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig680contigF-serratus_M_contig680:383340..384699 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size297
Cds size297
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932080.826377-CDS-F-serratus_M_contig680:383339..3834701622932080.826377-CDS-F-serratus_M_contig680:383339..383470Fucus serratus maleCDSF-serratus_M_contig680 383340..383470 -
1690964137.2648942-CDS-F-serratus_M_contig680:383339..3834701690964137.2648942-CDS-F-serratus_M_contig680:383339..383470Fucus serratus maleCDSF-serratus_M_contig680 383340..383470 -
1622932080.842607-CDS-F-serratus_M_contig680:384533..3846991622932080.842607-CDS-F-serratus_M_contig680:384533..384699Fucus serratus maleCDSF-serratus_M_contig680 384534..384699 -
1690964137.2750227-CDS-F-serratus_M_contig680:384533..3846991690964137.2750227-CDS-F-serratus_M_contig680:384533..384699Fucus serratus maleCDSF-serratus_M_contig680 384534..384699 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig680.17866.1prot_F-serratus_M_contig680.17866.1Fucus serratus malepolypeptideF-serratus_M_contig680 383340..384699 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig680.17866.1

>prot_F-serratus_M_contig680.17866.1 ID=prot_F-serratus_M_contig680.17866.1|Name=mRNA_F-serratus_M_contig680.17866.1|organism=Fucus serratus male|type=polypeptide|length=99bp
MGYERHVGPRLWLRGDKGFACKTMGYQRDSKTAEKCRQRSSRRDCGLRCH
LSQRQDVRCSRREKQRTHTTRGQGSLAWEVHAPVSNIFVCRWYNTGGC*
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mRNA from alignment at F-serratus_M_contig680:383340..384699-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig680.17866.1 ID=mRNA_F-serratus_M_contig680.17866.1|Name=mRNA_F-serratus_M_contig680.17866.1|organism=Fucus serratus male|type=mRNA|length=1360bp|location=Sequence derived from alignment at F-serratus_M_contig680:383340..384699- (Fucus serratus male)
ATGGGATACGAGCGTCATGTTGGCCCGAGACTATGGTTACGTGGGGACAA
AGGGTTCGCTTGTAAGACAATGGGATACCAACGAGACAGTAAGACGGCTG
AGAAGTGTCGGCAACGATCGTCACGGCGGGATTGCGGTCTCCGATGTCAT
CTCTCACAACGTCAAGGTGAGGAAACCATGCGCGTACAATACAGTACTGT
GTATTGGCATCATGCGCATTTTAGACCTCGAGCGCCGCGTCCATAATTTT
CATGCCCTATGCGCGGTGGTGTTAACTCAAAGTTGTCGTCTTTGCGTCAG
AATCTAAGTGAAAGTGCGTAGAAAACTTCACTAAAAAAATCATAGATTCT
ACATTCCATGTATATACAAGTAACAACAGGCGGTAAGAGTACTGGAGCTC
ATTTTGGTTCGCTCCAGAAATACAATGATGATCGTGGATCCAGCTTCGTT
CGAGTGGTGTAACTGTAAAATATACGGTACTAAGTATCCATCTCACTCAT
CGGTTTGGGCCGGTTAATTTTTTAGTGCGGCGGCAGGGGAAATGGCTAGA
GTTAGCAATGATAATTTTATCCGAAAGTAGACTGGTGGGACAACCTCTGT
TTGTGAAAAACGCTTTTTTCCCGTTGTCGACCTTCGTCTTATTCTTGGAG
CGTTGAGAGAGGGGTTCGCACTTTAGCCACAATCTACGGGCGGTCAATAT
GCTGTCTTGTCGCTTGGCCCAATATGTTCCGGATGTTCTGTCTCAGACCT
GTTCTGGCTATCTATTCGAATGGAAATAACACCCACAACAACAATGGCCC
TGTCCAGAGTAGCCAGGGGGGACGGAAATCTGGGCCAAAATAACCAAAGC
AGCAGTGGTAGTTCTGTAGGCCGGAGGTGCAAAGATCTGTCCAGCATTTC
AAGATATTCAGACCCAAGAATTGAGCCTCTCTGCTGCTCTGTCCTTTCGA
GCTACTTGTATTCAAGGCCAGAAACCAACTTGGTCAGGCAACCGAGAATA
TCCGAAATCCCAAAATCTGGGGGCAGATGAACCAGAACTCCTATATTTCT
GGACGTATGAAATGTCCACCTAACTGCATATCCTTCCGGGACGCACGCGA
ATGCCTATACGATGACATGATACGCACTATTGTAAAATGTTCACCGCAGT
CTAAGAGAGCGGCCATCCAAACATCTTGACGAGGTTAAGAACATTTTCGA
TTGTGCACATGTACCCGATGCAAAATCAGACGTACGGTGTTCACGGCGAG
AAAAGCAGAGGACACATACTACTCGGGGGCAAGGGTCGCTCGCCTGGGAA
GTTCATGCACCCGTGTCAAACATCTTTGTCTGCCGATGGTACAATACTGG
CGGTTGCTGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig680:383340..384699-

>mRNA_F-serratus_M_contig680.17866.1 ID=mRNA_F-serratus_M_contig680.17866.1|Name=mRNA_F-serratus_M_contig680.17866.1|organism=Fucus serratus male|type=CDS|length=594bp|location=Sequence derived from alignment at F-serratus_M_contig680:383340..384699- (Fucus serratus male)
ATGGGATACGAGCGTCATGTTGGCCCGAGACTATGGTTACGTGGGGACAA
AGGGTTCGCTTGTAAGACAATGGGATACCAACGAGACAGTAAGACGGCTG
AGAAGTGTCGGCAACGATCGTCACGGCGGGATTGCGGTCTCCGATGTCAT
CTCTCACAACGTCAAGATGGGATACGAGCGTCATGTTGGCCCGAGACTAT
GGTTACGTGGGGACAAAGGGTTCGCTTGTAAGACAATGGGATACCAACGA
GACAGTAAGACGGCTGAGAAGTGTCGGCAACGATCGTCACGGCGGGATTG
CGGTCTCCGATGTCATCTCTCACAACGTCAAGACGTACGGTGTTCACGGC
GAGAAAAGCAGAGGACACATACTACTCGGGGGCAAGGGTCGCTCGCCTGG
GAAGTTCATGCACCCGTGTCAAACATCTTTGTCTGCCGATGGTACAATAC
TGGCGGTTGCTGAACGTACGGTGTTCACGGCGAGAAAAGCAGAGGACACA
TACTACTCGGGGGCAAGGGTCGCTCGCCTGGGAAGTTCATGCACCCGTGT
CAAACATCTTTGTCTGCCGATGGTACAATACTGGCGGTTGCTGA
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