mRNA_F-serratus_M_contig680.17865.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig680.17865.1
Unique NamemRNA_F-serratus_M_contig680.17865.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig680.17865.1 vs. uniprot
Match: A0A6H5KTX5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KTX5_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 5.220e-9
Identity = 40/105 (38.10%), Postives = 58/105 (55.24%), Query Frame = 2 
Query:  101 AWAQARAPIRIGVSEAKLEGSGGKPSHGINKRTNFRGEMLEIPSREVETDDDHANKCMFVFYGRKDVIGGLRKRRTAGESKVGEGPLSQPCDLSFWKARK--AGE 409
            +W +++AP +    + K E    K   G  +         + P  + E DD     C+ VF G +D  GGLR+RR AGES+  EGPLSQPCD+++W+ R+  AGE
Sbjct:  112 SWERSKAPPKPPPEQDK-ENRPNKSGRGAGELQREAANFGQGPD-DAEGDD---GACLLVFAGEEDA-GGLRQRRVAGESEDAEGPLSQPCDVAYWRPRRTAAGE 210
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig680.17865.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KTX5_9PHAE5.220e-938.10Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig680contigF-serratus_M_contig680:372055..373238 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionSix-bladed beta-propeller, TolB-like
Ec32 orthologEc-22_000680.1
Exons2
Model size712
Cds size636
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig680.17865.1prot_F-serratus_M_contig680.17865.1Fucus serratus malepolypeptideF-serratus_M_contig680 372055..373162 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932080.7497408-CDS-F-serratus_M_contig680:372054..3726761622932080.7497408-CDS-F-serratus_M_contig680:372054..372676Fucus serratus maleCDSF-serratus_M_contig680 372055..372676 -
1690964137.2156186-CDS-F-serratus_M_contig680:372054..3726761690964137.2156186-CDS-F-serratus_M_contig680:372054..372676Fucus serratus maleCDSF-serratus_M_contig680 372055..372676 -
1622932080.7684095-CDS-F-serratus_M_contig680:373148..3731621622932080.7684095-CDS-F-serratus_M_contig680:373148..373162Fucus serratus maleCDSF-serratus_M_contig680 373149..373162 -
1690964137.2333221-CDS-F-serratus_M_contig680:373148..3731621690964137.2333221-CDS-F-serratus_M_contig680:373148..373162Fucus serratus maleCDSF-serratus_M_contig680 373149..373162 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932080.7812574-UTR-F-serratus_M_contig680:373162..3732381622932080.7812574-UTR-F-serratus_M_contig680:373162..373238Fucus serratus maleUTRF-serratus_M_contig680 373163..373238 -
1690964137.2442667-UTR-F-serratus_M_contig680:373162..3732381690964137.2442667-UTR-F-serratus_M_contig680:373162..373238Fucus serratus maleUTRF-serratus_M_contig680 373163..373238 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig680.17865.1

>prot_F-serratus_M_contig680.17865.1 ID=prot_F-serratus_M_contig680.17865.1|Name=mRNA_F-serratus_M_contig680.17865.1|organism=Fucus serratus male|type=polypeptide|length=212bp
MAVKRSWMAWAQARAPIRIGVSEAKLEGSGGKPSHGINKRTNFRGEMLEI
PSREVETDDDHANKCMFVFYGRKDVIGGLRKRRTAGESKVGEGPLSQPCD
LSFWKARKAGEDTPLAWDIVIPPWFRFWSGSSTTTEGANSPLRARPTKGP
KSQSRRIKQGALAEGSSFSRSERGDKHPASFKRSSDPKRWSQGRSGSVHD
AKSSEKSQEIPV
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mRNA from alignment at F-serratus_M_contig680:372055..373238-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig680.17865.1 ID=mRNA_F-serratus_M_contig680.17865.1|Name=mRNA_F-serratus_M_contig680.17865.1|organism=Fucus serratus male|type=mRNA|length=1184bp|location=Sequence derived from alignment at F-serratus_M_contig680:372055..373238- (Fucus serratus male)
TTCGTGACGTCGTTTGGGAGAAGGGGGAATACCAAGCCCGGTCTGATGGA
GGGACCCGAGGGCGTTTCATTTGTTGATGGCCGTCAAGAGGTACAGGCTG
CCAGCAATCGACGGTTTGCGAAGGTTATCATTCCCACTTTTCGAGACGAA
ACTCACATGGCTCAAAGAGCGAAGTCCTCCCAGCACAAACTGCGGTAAAA
CCTACGAGCTTCTAGGTATGGGTTACGCGCACATAAATATGTATGGATGT
AGTAGACGCAATATAGTTTCTATGTTGTCATATGAGTATCAAACGTTTGC
CAAAATCCTACGTTGGTAGAGACGCACATATGTTTAATCTTGACCTTATC
TCTGGTGGATTACGATGCATATATTAGATCATCGTCGCCGACACGGGCAA
CAACAGACTCCAGATTTTCCACGTTGGGCAGCTGACGGCTCCTCCTAGAG
TACCTCCAAAAACAGTCAACTCCGGCAGCGAAAGTGGTATTGGGGTTAAC
TCATCACGTGGTGGACTTATTTCGAGAACGGCCACAATCTATGAACCATC
GCCGACCGCAAGGTCGTGGATGGCGTGGGCTCAAGCGCGAGCCCCGATTC
GAATCGGTGTGAGTGAAGCGAAGCTTGAAGGGTCTGGCGGAAAGCCGAGT
CATGGGATAAACAAGAGGACAAACTTCCGTGGAGAAATGTTGGAGATACC
AAGCAGGGAGGTGGAAACGGACGACGACCATGCCAACAAATGTATGTTCG
TTTTTTACGGAAGGAAGGATGTTATCGGAGGGCTTCGGAAACGCCGGACT
GCGGGTGAGTCAAAAGTTGGAGAGGGACCCCTTAGCCAGCCTTGTGACCT
TTCCTTCTGGAAGGCACGTAAGGCAGGGGAGGACACACCTTTGGCTTGGG
ACATCGTTATTCCACCTTGGTTCCGATTTTGGAGTGGCAGCAGTACAACT
ACGGAGGGCGCGAACTCCCCCCTGCGAGCGAGACCTACGAAGGGCCCAAA
ATCACAATCCCGACGTATCAAGCAAGGGGCGCTCGCTGAGGGCTCGTCAT
TCTCGCGGAGCGAGCGAGGCGACAAGCATCCAGCTTCTTTTAAGAGAAGC
TCAGACCCAAAAAGGTGGAGCCAAGGGCGAAGCGGTAGTGTACACGACGC
AAAGAGCTCGGAGAAGAGTCAGGAGATACCGGTG
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Coding sequence (CDS) from alignment at F-serratus_M_contig680:372055..373238-

>mRNA_F-serratus_M_contig680.17865.1 ID=mRNA_F-serratus_M_contig680.17865.1|Name=mRNA_F-serratus_M_contig680.17865.1|organism=Fucus serratus male|type=CDS|length=1272bp|location=Sequence derived from alignment at F-serratus_M_contig680:372055..373238- (Fucus serratus male)
ATGGCCGTCAAGAGATGGCCGTCAAGAGGTCGTGGATGGCGTGGGCTCAA
GCGCGAGCCCCGATTCGAATCGGTGTGAGTGAAGCGAAGCTTGAAGGGTC
TGGCGGAAAGCCGAGTCATGGGATAAACAAGAGGACAAACTTCCGTGGAG
AAATGTTGGAGATACCAAGCAGGGAGGTGGAAACGGACGACGACCATGCC
AACAAATGTATGTTCGTTTTTTACGGAAGGAAGGATGTTATCGGAGGGCT
TCGGAAACGCCGGACTGCGGGTGAGTCAAAAGTTGGAGAGGGACCCCTTA
GCCAGCCTTGTGACCTTTCCTTCTGGAAGGCACGTAAGGCAGGGGAGGAC
ACACCTTTGGCTTGGGACATCGTTATTCCACCTTGGTTCCGATTTTGGAG
TGGCAGCAGTACAACTACGGAGGGCGCGAACTCCCCCCTGCGAGCGAGAC
CTACGAAGGGCCCAAAATCACAATCCCGACGTATCAAGCAAGGGGCGCTC
GCTGAGGGCTCGTCATTCTCGCGGAGCGAGCGAGGCGACAAGCATCCAGC
TTCTTTTAAGAGAAGCTCAGACCCAAAAAGGTGGAGCCAAGGGCGAAGCG
GTAGTGTACACGACGCAAAGAGCTCGGAGAAGAGTCAGGAGATACCGGTG
GTCGTGGATGGCGTGGGCTCAAGCGCGAGCCCCGATTCGAATCGGTGTGA
GTGAAGCGAAGCTTGAAGGGTCTGGCGGAAAGCCGAGTCATGGGATAAAC
AAGAGGACAAACTTCCGTGGAGAAATGTTGGAGATACCAAGCAGGGAGGT
GGAAACGGACGACGACCATGCCAACAAATGTATGTTCGTTTTTTACGGAA
GGAAGGATGTTATCGGAGGGCTTCGGAAACGCCGGACTGCGGGTGAGTCA
AAAGTTGGAGAGGGACCCCTTAGCCAGCCTTGTGACCTTTCCTTCTGGAA
GGCACGTAAGGCAGGGGAGGACACACCTTTGGCTTGGGACATCGTTATTC
CACCTTGGTTCCGATTTTGGAGTGGCAGCAGTACAACTACGGAGGGCGCG
AACTCCCCCCTGCGAGCGAGACCTACGAAGGGCCCAAAATCACAATCCCG
ACGTATCAAGCAAGGGGCGCTCGCTGAGGGCTCGTCATTCTCGCGGAGCG
AGCGAGGCGACAAGCATCCAGCTTCTTTTAAGAGAAGCTCAGACCCAAAA
AGGTGGAGCCAAGGGCGAAGCGGTAGTGTACACGACGCAAAGAGCTCGGA
GAAGAGTCAGGAGATACCGGTG
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