mRNA_F-serratus_M_contig6770.17789.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6770.17789.1
Unique NamemRNA_F-serratus_M_contig6770.17789.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig6770.17789.1 vs. uniprot
Match: A0A6H5JS47_9PHAE (Btz domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS47_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 1.100e-28
Identity = 87/179 (48.60%), Postives = 104/179 (58.10%), Query Frame = 1 
Query:   16 EDEEAQRAAFAAAKAEEEAIKEERRAMRNNPAIIPTLGGFFVHDNRVGDGDAAGGDHQGSDGGEAEDDL----------------VGKWRADALPPARGDAEGEERGASGKKKTSKKKGTRWGRGDEDGDDDDEPWGHEGYEEVLRAEEEGRPISNSSTFWSNPTGKTGKDRAGAWKRG 504
            E+ EA+ A +AAAKAEE+AIK+ERRA+R NPA+IP LG FFVHD+R G                                     VG+WRADALP  + +  G+     G +   KKK       D D  DD  PWGHEGYEEVLRAEEEGRPI++SS FWSNPTGK G  R+GAW+ G
Sbjct:  158 EEREARMAEYAAAKAEEDAIKQERRAIRENPAVIPKLGAFFVHDDRGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVGRWRADALPSPKKNKSGDV----GLRARRKKKPV-----DPDXXDD-LPWGHEGYEEVLRAEEEGRPIASSSGFWSNPTGKDG--RSGAWRGG 324
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BLAST of mRNA_F-serratus_M_contig6770.17789.1 vs. uniprot
Match: D8LS31_ECTSI (Btz domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS31_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 1.290e-7
Identity = 30/42 (71.43%), Postives = 37/42 (88.10%), Query Frame = 1 
Query:   28 AQRAAFAAAKAEEEAIKEERRAMRNNPAIIPTLGGFFVHDNR 153
            A+ A +AAAKAEE+AIK+ERRA+R NPA+IP LG FFVHD+R
Sbjct:  149 ARMAEYAAAKAEEDAIKQERRAIRENPAVIPKLGAFFVHDDR 190
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6770.17789.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JS47_9PHAE1.100e-2848.60Btz domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LS31_ECTSI1.290e-771.43Btz domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6770contigF-serratus_M_contig6770:764..3254 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size688
Cds size684
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6770.17789.1prot_F-serratus_M_contig6770.17789.1Fucus serratus malepolypeptideF-serratus_M_contig6770 766..3254 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932067.276059-CDS-F-serratus_M_contig6770:765..10561622932067.276059-CDS-F-serratus_M_contig6770:765..1056Fucus serratus maleCDSF-serratus_M_contig6770 766..1056 -
1690964129.7562392-CDS-F-serratus_M_contig6770:765..10561690964129.7562392-CDS-F-serratus_M_contig6770:765..1056Fucus serratus maleCDSF-serratus_M_contig6770 766..1056 -
1622932067.2932382-CDS-F-serratus_M_contig6770:1552..16581622932067.2932382-CDS-F-serratus_M_contig6770:1552..1658Fucus serratus maleCDSF-serratus_M_contig6770 1553..1658 -
1690964129.7672143-CDS-F-serratus_M_contig6770:1552..16581690964129.7672143-CDS-F-serratus_M_contig6770:1552..1658Fucus serratus maleCDSF-serratus_M_contig6770 1553..1658 -
1622932067.3144789-CDS-F-serratus_M_contig6770:2160..23661622932067.3144789-CDS-F-serratus_M_contig6770:2160..2366Fucus serratus maleCDSF-serratus_M_contig6770 2161..2366 -
1690964129.778015-CDS-F-serratus_M_contig6770:2160..23661690964129.778015-CDS-F-serratus_M_contig6770:2160..2366Fucus serratus maleCDSF-serratus_M_contig6770 2161..2366 -
1622932067.3299425-CDS-F-serratus_M_contig6770:3173..32541622932067.3299425-CDS-F-serratus_M_contig6770:3173..3254Fucus serratus maleCDSF-serratus_M_contig6770 3174..3254 -
1690964129.7887676-CDS-F-serratus_M_contig6770:3173..32541690964129.7887676-CDS-F-serratus_M_contig6770:3173..3254Fucus serratus maleCDSF-serratus_M_contig6770 3174..3254 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6770.17789.1

>prot_F-serratus_M_contig6770.17789.1 ID=prot_F-serratus_M_contig6770.17789.1|Name=mRNA_F-serratus_M_contig6770.17789.1|organism=Fucus serratus male|type=polypeptide|length=228bp
DEGSVEDEEAQRAAFAAAKAEEEAIKEERRAMRNNPAIIPTLGGFFVHDN
RVGDGDAAGGDHQGSDGGEAEDDLVGKWRADALPPARGDAEGEERGASGK
KKTSKKKGTRWGRGDEDGDDDDEPWGHEGYEEVLRAEEEGRPISNSSTFW
SNPTGKTGKDRAGAWKRGGSGRRGGGGGSGVWGAERESFQDDLASAGNQN
GSWSRSQRDGFEGTGRERGRGRGRGGSR
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mRNA from alignment at F-serratus_M_contig6770:764..3254-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6770.17789.1 ID=mRNA_F-serratus_M_contig6770.17789.1|Name=mRNA_F-serratus_M_contig6770.17789.1|organism=Fucus serratus male|type=mRNA|length=2491bp|location=Sequence derived from alignment at F-serratus_M_contig6770:764..3254- (Fucus serratus male)
GACGAGGGGAGTGTGGAGGATGAAGAAGCGCAGCGCGCGGCTTTCGCGGC
TGCCAAGGCTGAAGAGGAGGCGATCAAAGAGGTTACGGATAGTTATAATA
TTAATAGTTATTATGTGCTTGAGATAGTGCGCCCTTTTTTTTATCTGTGC
TGTATGCCTTATCTTACCTTATCTTGTGTGTTGTTCGTAGTAATAGTAGT
CTATTTTGTACTATTAATAGTCGCGTTCTCTAGTACTGGAGTATTTACTA
TTAATATTATATCAAGTCGGCCACTTTCGAGCGCGCCCTGTTTTTCCGCC
ATGACTCGCTTGGTCTCGAATCAACCTTCAATCTATCTTGAAGCCTTGAA
GACGTGGAAGTTTGATCGTTACAGCCGGCCGTTTCGTGAAGAGCATTACT
GTCTTATCTATATCCGACCCGCGTCTTCTATTCAATCCTATCAACTCAAA
AAATAGTGCTGCTGGAAATGAAAAAATATTAGTTTTGTAACAGACAGTGA
CGTGATTATGTTTCCCCAGGACCTCCTTTTTGCAGATGCTTCGTTGCCCA
ACGACCTCGGCATGACGGCCCAACTGAGCGGCAAATCTCAAAACATAAAT
CCCCCCCCCCTCCCAGCCCCCACCTAACCCCCATGGCATACAAACACACG
ACAATCAGCGGGTATCAATATAAAAATTGTAAAAAATAATACTATAACAC
CTTTTTTTTTCATATCAAAAGTACCTCCATTTCCTCATGAAGCCGAAAGT
TGACCCTAGTGGCTGGTTCGCCGCGAGCGCGTGATGACGTTAAGGTCGAT
CTCGCTCTCGTTCCCACCTATATATAACCTATATATAACCTATATATAAC
CTATATATAACCTATATAACCCCCTAAACCCTTTTCAGGAACGCCGGGCC
ATGCGGAACAACCCCGCCATCATCCCTACCCTGGGCGGCTTTTTTGTGCA
CGACAACCGCGTAGGCGATGGGGATGCCGCTGGAGGTGACCACCAGGGGA
GTGACGGGGGAGAAGCTGAGGATGACCTGGTGGGCAAGTGGCGCGCCGAC
GCTCTGCCTCCCGCTAGAGGGGATGCTGAAGGCGAAGAAAGAGGGTGGGC
ATATACTGAATACTGAGGGGCGCGCCCGGGGGAGAGGGCGGGGCATCGTG
GTACAGAATAGGATAATTTAGGGATCCGAGTGGATCAGACTTGAGGTGTA
GAAAGTACCGAGGGAGAGATGGGATGGAATTCTTGCACACTCGATTTATG
TTCCATGTTCCATGACTCCCGTGTCGGAACATGTGCTCCTGAGGATTTTG
TACGGAACAAACGTCAGCCCCCCCCCCCCCCCCCTCCCTTCTTTGTCGAT
GACGTCACACCGAATCAAGCTGTGAGCCGGCACAGCGCCATTAGTAGCAC
GTGTATGCAAAGCCTGGCTTGGAGAGTTCGTCCCGTCGCTTGTTGGGAAC
CACCCCGTAACCCTGTTGTTACATCTTCCTCCGCTGTTTCTTTGGTCGGC
GGGTGGCTCGATGACGACTTTCTCCGATCTCTCGCCGCCTTACAATAAAA
AAAAACACACACGCAACGTAACGCTACTACTCGGAAATGCCAGCAGGGCG
AGTGGAAAAAAGAAAACCTCGAAGAAGAAAGGGACTCGCTGGGGACGCGG
TGACGAGGACGGCGACGATGACGACGAGCCCTGGGGGCACGAAGGATACG
AGGTGTGTTTCCTCCTTTCTTTATTCCTGTCTTACGACGACTGACGGGGA
CTAATAGAGACGCGGGCCATGGAGGGAGGACAAGAGAGAGAGGAAGAGGG
GTGGTGAGGATATGACATGATATAGTATAGTCAGGGCAAAATCACCTGCT
AGAGTACACATTTGTACGCACACATTATACGTAGTATATCAGTGGCAACA
GTCAATCAAAGTACCCTGGTGTTTTGTGAAAGTGCTCTTTTCAAAGCATG
GACTACACGGTTCGTTAAAGCACCTGGTACATAGAATCGTTCACTTTCCT
AGGCACACAATGGCATCTCTGCTCTCTTGAGCGGACCTCGGAACTGTCTG
CAGTGTTGTTCCCCCCCCCCCCCCTTCTCAGTTGTCCCTTTTCCGCAGCC
ACGATCAAAATCTAAAAAAACGGCTGATTCTGCCGGCACCGGACGATTTC
CTTCGCCACTTGAGCCCACCTTTCCCGCTCTATTTTTTTTTCTATCAGGA
AGTGCTGCGGGCGGAGGAAGAGGGTCGACCCATCTCCAACTCATCCACCT
TTTGGTCCAACCCTACCGGCAAGACTGGTAAGGATCGAGCCGGTGCCTGG
AAACGTGGAGGCAGCGGAAGACGTGGTGGTGGTGGTGGTAGCGGTGTGTG
GGGCGCCGAACGGGAGTCTTTCCAAGACGATCTCGCCAGCGCAGGCAACC
AGAACGGAAGCTGGAGCAGGAGCCAGAGGGACGGTTTCGAGGGAACTGGG
AGAGAACGAGGCCGTGGGCGAGGCAGAGGCGGGAGTAGGGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig6770:764..3254-

>mRNA_F-serratus_M_contig6770.17789.1 ID=mRNA_F-serratus_M_contig6770.17789.1|Name=mRNA_F-serratus_M_contig6770.17789.1|organism=Fucus serratus male|type=CDS|length=1368bp|location=Sequence derived from alignment at F-serratus_M_contig6770:764..3254- (Fucus serratus male)
GACGAGGGGAGTGTGGAGGATGAAGAAGCGCAGCGCGCGGCTTTCGCGGC
TGCCAAGGCTGAAGAGGAGGCGATCAAAGAGGACGAGGGGAGTGTGGAGG
ATGAAGAAGCGCAGCGCGCGGCTTTCGCGGCTGCCAAGGCTGAAGAGGAG
GCGATCAAAGAGGAACGCCGGGCCATGCGGAACAACCCCGCCATCATCCC
TACCCTGGGCGGCTTTTTTGTGCACGACAACCGCGTAGGCGATGGGGATG
CCGCTGGAGGTGACCACCAGGGGAGTGACGGGGGAGAAGCTGAGGATGAC
CTGGTGGGCAAGTGGCGCGCCGACGCTCTGCCTCCCGCTAGAGGGGATGC
TGAAGGCGAAGAAAGAGGGAACGCCGGGCCATGCGGAACAACCCCGCCAT
CATCCCTACCCTGGGCGGCTTTTTTGTGCACGACAACCGCGTAGGCGATG
GGGATGCCGCTGGAGGTGACCACCAGGGGAGTGACGGGGGAGAAGCTGAG
GATGACCTGGTGGGCAAGTGGCGCGCCGACGCTCTGCCTCCCGCTAGAGG
GGATGCTGAAGGCGAAGAAAGAGGGGCGAGTGGAAAAAAGAAAACCTCGA
AGAAGAAAGGGACTCGCTGGGGACGCGGTGACGAGGACGGCGACGATGAC
GACGAGCCCTGGGGGCACGAAGGATACGAGGGCGAGTGGAAAAAAGAAAA
CCTCGAAGAAGAAAGGGACTCGCTGGGGACGCGGTGACGAGGACGGCGAC
GATGACGACGAGCCCTGGGGGCACGAAGGATACGAGGAAGTGCTGCGGGC
GGAGGAAGAGGGTCGACCCATCTCCAACTCATCCACCTTTTGGTCCAACC
CTACCGGCAAGACTGGTAAGGATCGAGCCGGTGCCTGGAAACGTGGAGGC
AGCGGAAGACGTGGTGGTGGTGGTGGTAGCGGTGTGTGGGGCGCCGAACG
GGAGTCTTTCCAAGACGATCTCGCCAGCGCAGGCAACCAGAACGGAAGCT
GGAGCAGGAGCCAGAGGGACGGTTTCGAGGGAACTGGGAGAGAACGAGGC
CGTGGGCGAGGCAGAGGCGGGAGTAGGGAAGTGCTGCGGGCGGAGGAAGA
GGGTCGACCCATCTCCAACTCATCCACCTTTTGGTCCAACCCTACCGGCA
AGACTGGTAAGGATCGAGCCGGTGCCTGGAAACGTGGAGGCAGCGGAAGA
CGTGGTGGTGGTGGTGGTAGCGGTGTGTGGGGCGCCGAACGGGAGTCTTT
CCAAGACGATCTCGCCAGCGCAGGCAACCAGAACGGAAGCTGGAGCAGGA
GCCAGAGGGACGGTTTCGAGGGAACTGGGAGAGAACGAGGCCGTGGGCGA
GGCAGAGGCGGGAGTAGG
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