mRNA_F-serratus_M_contig676.17783.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig676.17783.1
Unique NamemRNA_F-serratus_M_contig676.17783.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig676.17783.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig676contigF-serratus_M_contig676:133702..137545 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score98.6
Seed ortholog evalue6.1e-18
Seed eggNOG ortholog2880.D7FNX8
Hectar predicted targeting categoryother localisation
EggNOG OGs28NM8@1,2QV6X@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size2519
Cds size1050
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932066.530784-UTR-F-serratus_M_contig676:133701..1337281622932066.530784-UTR-F-serratus_M_contig676:133701..133728Fucus serratus maleUTRF-serratus_M_contig676 133702..133728 +
1690964129.3772159-UTR-F-serratus_M_contig676:133701..1337281690964129.3772159-UTR-F-serratus_M_contig676:133701..133728Fucus serratus maleUTRF-serratus_M_contig676 133702..133728 +
1622932066.558703-UTR-F-serratus_M_contig676:134080..1342691622932066.558703-UTR-F-serratus_M_contig676:134080..134269Fucus serratus maleUTRF-serratus_M_contig676 134081..134269 +
1690964129.3982816-UTR-F-serratus_M_contig676:134080..1342691690964129.3982816-UTR-F-serratus_M_contig676:134080..134269Fucus serratus maleUTRF-serratus_M_contig676 134081..134269 +
1622932066.5726798-UTR-F-serratus_M_contig676:134695..1347661622932066.5726798-UTR-F-serratus_M_contig676:134695..134766Fucus serratus maleUTRF-serratus_M_contig676 134696..134766 +
1690964129.4103677-UTR-F-serratus_M_contig676:134695..1347661690964129.4103677-UTR-F-serratus_M_contig676:134695..134766Fucus serratus maleUTRF-serratus_M_contig676 134696..134766 +
1622932066.5872343-UTR-F-serratus_M_contig676:135142..1351551622932066.5872343-UTR-F-serratus_M_contig676:135142..135155Fucus serratus maleUTRF-serratus_M_contig676 135143..135155 +
1690964129.4258668-UTR-F-serratus_M_contig676:135142..1351551690964129.4258668-UTR-F-serratus_M_contig676:135142..135155Fucus serratus maleUTRF-serratus_M_contig676 135143..135155 +
1622932066.6395833-UTR-F-serratus_M_contig676:136376..1375451622932066.6395833-UTR-F-serratus_M_contig676:136376..137545Fucus serratus maleUTRF-serratus_M_contig676 136377..137545 +
1690964129.4616668-UTR-F-serratus_M_contig676:136376..1375451690964129.4616668-UTR-F-serratus_M_contig676:136376..137545Fucus serratus maleUTRF-serratus_M_contig676 136377..137545 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932066.6041148-CDS-F-serratus_M_contig676:135155..1359411622932066.6041148-CDS-F-serratus_M_contig676:135155..135941Fucus serratus maleCDSF-serratus_M_contig676 135156..135941 +
1690964129.4409623-CDS-F-serratus_M_contig676:135155..1359411690964129.4409623-CDS-F-serratus_M_contig676:135155..135941Fucus serratus maleCDSF-serratus_M_contig676 135156..135941 +
1622932066.6223204-CDS-F-serratus_M_contig676:136112..1363761622932066.6223204-CDS-F-serratus_M_contig676:136112..136376Fucus serratus maleCDSF-serratus_M_contig676 136113..136376 +
1690964129.4519606-CDS-F-serratus_M_contig676:136112..1363761690964129.4519606-CDS-F-serratus_M_contig676:136112..136376Fucus serratus maleCDSF-serratus_M_contig676 136113..136376 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig676.17783.1prot_F-serratus_M_contig676.17783.1Fucus serratus malepolypeptideF-serratus_M_contig676 135156..136376 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig676.17783.1

>prot_F-serratus_M_contig676.17783.1 ID=prot_F-serratus_M_contig676.17783.1|Name=mRNA_F-serratus_M_contig676.17783.1|organism=Fucus serratus male|type=polypeptide|length=350bp
MQYKTKNKPWDITRSHQVSFKEGLEDTVCRDMWSQATSGAASDGCSFGEE
DDACYRFVRWSDLSVALESSLCRVQTTSSGVGGSMSSEDRLEGEGSFSSS
DSFNSSDWGVRGQSQGYGFDSFFQARGLEDSELNFIREVLLKYSTNDGMF
VNNSERETCEEKGNIFTGYASSGYMSEKGDENDEIFSLKTFARFSKGWLG
PVIATLSRMWQEWAEMEPIKVHGFVSRKETKRQLLETGLLGVFLLRFSET
HKGCFILSITCEPDGMTANIGHSRSRLDVKELLVTVQEDGRWKLCYSKNA
KDGVTYGSLSMLVLETSSLKKLYPGTPKETVFSSSPTTDSSASIMVNEF*
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mRNA from alignment at F-serratus_M_contig676:133702..137545+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig676.17783.1 ID=mRNA_F-serratus_M_contig676.17783.1|Name=mRNA_F-serratus_M_contig676.17783.1|organism=Fucus serratus male|type=mRNA|length=3844bp|location=Sequence derived from alignment at F-serratus_M_contig676:133702..137545+ (Fucus serratus male)
CAACACTTCAGCAATTCCAGGGAGGGGGTGAGTAATCCAATCCGAGGAGT
TAACAGCTGTTCTACATGATGGAGGAAGTACAGAGTTGGTGATGCATCGT
GAACACTTCATGGAGGAGGTATGACGTTGGTCTTACGTGGAGACTGTTGT
AGCGCTCTCTGTTACAGGCGTTTGGGAGCTCCACCATCGCCCTCGTAAAA
ATGGGATGTTACTCTTGACCCGCGTGATCGCAGTCGGAGCGCTCTGAATC
GTGTGAGTGACCACACATTCCTCCGCACATAATATTGTGTTTTGGGGGAA
TCCTGGCCCGATTCTCCCAGGGCAGCCGTTATCATTCCAGTCACCTGAAG
TATTTGCATCCGTATGTCTGTGTGTGCAGGTACACCCAGTCAAAACTTTG
AAAAGGGTGGAATTGGCGAAGTTACTACTGAGCCTGTTCCCGTGCGATGG
CCGACGTTTACTTGCGGACAAAATTGGGCTCGAAAACTGCGCGTGTTACG
AAGACGTGGTGAAATCTCTCGAGAACCATGAACTACTGAAGTCGGTGAAG
GGAAATCCCGGATTACTGGTGAGGGACGTGCTTACTGCGCCACATTGACG
TGTGCATAGCCGTGTATCGCTGAGCTTTTTTTTTCCTGCCTGGTCGCTCC
TTTAGGGAATCTGATGTAAGCGTTTTAGATTGCACAAAAGCTCATAACCG
CGATACACGTAGCGCGCTGAGTTCACCGCCTCGCGCAGCACGGAACGGGA
AAAACAAAACCGGCGCGTTTTGTATTTTACACTTACGCACATACGTATCT
TCCAGTTGAACCACATGTGGGAAAAAGGCAGATCTTTATCTTGAGAGTAA
GCTGTATACAGTGCCTTCTTCAATCGTTGCGCCGTGTCTTCGTTCCTTCC
CTCGCTCGAATGTGGATCGTCCTCACCAGCCTCCATACCTGTTGCGTCTT
TACTGTATTACATCGTATCTTTGCTCGCTTTCTCTTCTTAACAGTGTCAA
ATTGCTCCGCTACTGAAGCGAAAACAGTTCTTGAGCGATGACACGGTGGA
GGAAACGGCTGCGAAGTGCGTTCCTGTTAGGAGCATTCTCAATACTGTAG
CAGATATTGTTGCTTGTGTGAAGGATTCGGTGGTGTAGCTGTTCATCACC
TCTCATTTCAATGTAGTATTCGGAAGACTAGCAGACTGGAAACAAGCGGT
GGGAGAGGAGAGATTCGATATGCGTCACAGTAGCCGAGCCGCGATGCCAG
CAAGTTTACGAATAAGTGTGAGGAAAGGGGCATGTTCGCGTTTGGCTTCA
CTGTGTCCCTTGTAGCATGATTTATATATTGTGCCTGCATATCATACCTC
CCCATTGTCAATTTTTGAGCACGCGTTCACTTTTCAGCCTCTTCACTCCG
TTATTGTTCTCTGGCTTCCGCTCGTTTTGTTTTTCCCTCAGATATCTCAA
TCGAATGCAGTACAAGACGAAAAACAAACCTTGGGATATAACACGCTCGC
ACCAGGTATCCTTTAAAGAAGGGCTAGAAGACACCGTATGTAGGGACATG
TGGTCACAGGCCACGTCTGGGGCAGCAAGCGACGGCTGTAGCTTTGGCGA
GGAGGACGACGCATGTTACCGCTTCGTGCGTTGGAGCGACCTCTCGGTGG
CCCTAGAAAGTAGCTTGTGCCGAGTTCAGACGACCTCTAGCGGCGTGGGG
GGGTCTATGAGCAGTGAAGATCGCCTAGAGGGCGAGGGAAGCTTTTCAAG
TTCCGACTCTTTCAACAGCTCGGATTGGGGAGTACGCGGGCAAAGTCAGG
GATATGGGTTCGATAGCTTTTTTCAAGCCCGCGGTTTGGAAGACAGCGAA
CTGAATTTCATCCGGGAAGTCTTGCTGAAGTATTCAACCAATGATGGAAT
GTTTGTAAACAACAGCGAACGAGAAACATGCGAAGAAAAGGGCAATATCT
TCACAGGGTACGCTAGCTCAGGCTACATGTCTGAGAAAGGCGACGAAAAC
GACGAGATATTCTCTTTAAAGACGTTTGCAAGATTCTCTAAAGGGTGGCT
GGGTCCGGTCATAGCCACTTTGTCACGAATGTGGCAAGAGTGGGCAGAGA
TGGAGCCTATTAAGGTACATGGGTTCGTGAGCCGTAAAGAGACTAAACGC
CAGCTTTTGGAGACAGGATTGCTCGGGGTTTTCCTGCTGCGATTCAGCGA
GACACACAAAGGGTGCTTCATACTCTCCATCACGTGCGAGGTAAGAACCA
GGTCGGGTAAAAAGGTTGATCTATGCTTTGCGCACATGCTTGCTTCCGTA
AAAGTCTTGGAGCTCGAGGTCGAGCGTGTGCGATCCTAGATCTTGGGCCC
AGCGTGACTCTTTCAACACCCGCCTTATCGCTGCTCTTCTACCATGTGAA
TTACGCCACAGCCCGATGGAATGACGGCCAATATCGGCCACTCCCGAAGC
CGTTTGGATGTCAAGGAGCTCTTGGTAACCGTGCAGGAGGATGGGCGGTG
GAAATTATGCTACAGCAAAAACGCCAAGGATGGTGTGACTTATGGATCCC
TGTCGATGCTTGTACTCGAAACATCATCACTAAAGAAGCTGTATCCAGGC
ACCCCGAAGGAGACTGTGTTCAGCAGCTCGCCGACCACAGATTCCAGCGC
ATCGATTATGGTGAATGAGTTCTAAATTCGCCACATGGTATCAACAACCT
CGAGACCACGGAAGACGTGATGTGGATACGTAATACGGGGACGATACTCG
TTCCGATTATGACGATGAGGTCACCCTCTCCGCCAAAGGAAGATCAACAC
CATCAAGCAATGAGAACTTTTGGCGAAAGAAGCGGCGAAGCGGTGCCTCT
CTGACAGACTCAGACGTCCCATACGCTGACAATCAGGTTCCTCCTCGAGC
GCAAACGCGTACTCGATGCTGGCAATTGAAAGCTGCGCAACAATCACTGT
AACCTATTTCATGCTTTTATTTTTTTGTAGCCGGGAAATTGTCTCTGTAC
TTTTTTTGATAGGGAGCGATGAAGGATTTTCAAAACTTTTGCCAAGGCCC
TTTTATTTCGCCGGCTCGAACGCCTCTGTCGCCAGGACGCGAAAGTACTG
GTAGTAAGTAAGTAAGGTAGGTCTCTATTGGGTGATCCTGTAGTAGGCAA
TCACCTCAAGAAATATTAGCATGCAGGAGAGAGGGGTAAACAAATGCTGG
TAGCGGCTTGATCACAGCACAGCTCTATGCCGCAAGTGATTGAAGCTTTG
AAGACTGGTGCCTGATCAAGCTTGTGGTCCACGCTTTATTCCTGACTCGG
TCTGCGTATTCTCGTTTGGCGTTGCATGCCACTCCTTTGCCTGTCTCCTT
TCTTGTGATTCTGCAACTGTCGACTGTCGTCCTGGCTTTGAAGTAATTTG
AACGGCTGGCGTACCGTTGCTTCTCCGTTGTGTAGGTATTGCCCGGATTA
AACTAATCTTCATATATTTTCAGCAGCATTTTCGTCGCTAACTATTTATG
TAATGTCGAATTGTAACTATAGCAACTAAAGCATTATACTTTCAACATGC
CCACTTCATACCAATAGTGGGTGTGGGAAAGAGAGGCGCTTACTAATTGG
TCCACAGTGGCCTGCCAAGGCAGCGCCCGTTTCATGAACTACCTTGAGGT
ATTTTTTGTATTGTTGCTTCCATAGTGTAGCAGAAAGTGTGAAAACGTGG
GAAGGTAAATTCCGCCATTATTTTTGATTGACGAGTTGCAAGAGTGCTGA
ACTTGCATCGCGTTAAAAATCGCAAGGCAAGGACGGGGAGAGATAAAGAT
GGGAAGATCTTTTGTGACCACGTCAGGCAGAATGGCAACGTTGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig676:133702..137545+

>mRNA_F-serratus_M_contig676.17783.1 ID=mRNA_F-serratus_M_contig676.17783.1|Name=mRNA_F-serratus_M_contig676.17783.1|organism=Fucus serratus male|type=CDS|length=2100bp|location=Sequence derived from alignment at F-serratus_M_contig676:133702..137545+ (Fucus serratus male)
ATGCAGTACAAGACGAAAAACAAACCTTGGGATATAACACGCTCGCACCA
GGTATCCTTTAAAGAAGGGCTAGAAGACACCGTATGTAGGGACATGTGGT
CACAGGCCACGTCTGGGGCAGCAAGCGACGGCTGTAGCTTTGGCGAGGAG
GACGACGCATGTTACCGCTTCGTGCGTTGGAGCGACCTCTCGGTGGCCCT
AGAAAGTAGCTTGTGCCGAGTTCAGACGACCTCTAGCGGCGTGGGGGGGT
CTATGAGCAGTGAAGATCGCCTAGAGGGCGAGGGAAGCTTTTCAAGTTCC
GACTCTTTCAACAGCTCGGATTGGGGAGTACGCGGGCAAAGTCAGGGATA
TGGGTTCGATAGCTTTTTTCAAGCCCGCGGTTTGGAAGACAGCGAACTGA
ATTTCATCCGGGAAGTCTTGCTGAAGTATTCAACCAATGATGGAATGTTT
GTAAACAACAGCGAACGAGAAACATGCGAAGAAAAGGGCAATATCTTCAC
AGGGTACGCTAGCTCAGGCTACATGTCTGAGAAAGGCGACGAAAACGACG
AGATATTCTCTTTAAAGACGTTTGCAAGATTCTCTAAAGGGTGGCTGGGT
CCGGTCATAGCCACTTTGTCACGAATGTGGCAAGAGTGGGCAGAGATGGA
GCCTATTAAGGTACATGGGTTCGTGAGCCGTAAAGAGACTAAACGCCAGC
TTTTGGAGACAGGATTGCTCGGGGTTTTCCTGCTGCGATTCAGCGAGACA
CACAAAGGGTGCTTCATACTCTCCATCACGTGCGAGATGCAGTACAAGAC
GAAAAACAAACCTTGGGATATAACACGCTCGCACCAGGTATCCTTTAAAG
AAGGGCTAGAAGACACCGTATGTAGGGACATGTGGTCACAGGCCACGTCT
GGGGCAGCAAGCGACGGCTGTAGCTTTGGCGAGGAGGACGACGCATGTTA
CCGCTTCGTGCGTTGGAGCGACCTCTCGGTGGCCCTAGAAAGTAGCTTGT
GCCGAGTTCAGACGACCTCTAGCGGCGTGGGGGGGTCTATGAGCAGTGAA
GATCGCCTAGAGGGCGAGGGAAGCTTTTCAAGTTCCGACTCTTTCAACAG
CTCGGATTGGGGAGTACGCGGGCAAAGTCAGGGATATGGGTTCGATAGCT
TTTTTCAAGCCCGCGGTTTGGAAGACAGCGAACTGAATTTCATCCGGGAA
GTCTTGCTGAAGTATTCAACCAATGATGGAATGTTTGTAAACAACAGCGA
ACGAGAAACATGCGAAGAAAAGGGCAATATCTTCACAGGGTACGCTAGCT
CAGGCTACATGTCTGAGAAAGGCGACGAAAACGACGAGATATTCTCTTTA
AAGACGTTTGCAAGATTCTCTAAAGGGTGGCTGGGTCCGGTCATAGCCAC
TTTGTCACGAATGTGGCAAGAGTGGGCAGAGATGGAGCCTATTAAGGTAC
ATGGGTTCGTGAGCCGTAAAGAGACTAAACGCCAGCTTTTGGAGACAGGA
TTGCTCGGGGTTTTCCTGCTGCGATTCAGCGAGACACACAAAGGGTGCTT
CATACTCTCCATCACGTGCGAGCCCGATGGAATGACGGCCAATATCGGCC
ACTCCCGAAGCCGTTTGGATGTCAAGGAGCTCTTGGTAACCGTGCAGGAG
GATGGGCGGTGGAAATTATGCTACAGCAAAAACGCCAAGGATGGTGTGAC
TTATGGATCCCTGTCGATGCTTGTACTCGAAACATCATCACTAAAGAAGC
TGTATCCAGGCACCCCGAAGGAGACTGTGTTCAGCAGCTCGCCGACCACA
GATTCCAGCGCATCGATTATGGTGAATGAGTTCTAACCCGATGGAATGAC
GGCCAATATCGGCCACTCCCGAAGCCGTTTGGATGTCAAGGAGCTCTTGG
TAACCGTGCAGGAGGATGGGCGGTGGAAATTATGCTACAGCAAAAACGCC
AAGGATGGTGTGACTTATGGATCCCTGTCGATGCTTGTACTCGAAACATC
ATCACTAAAGAAGCTGTATCCAGGCACCCCGAAGGAGACTGTGTTCAGCA
GCTCGCCGACCACAGATTCCAGCGCATCGATTATGGTGAATGAGTTCTAA
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