mRNA_F-serratus_M_contig6742.17766.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6742.17766.1
Unique NamemRNA_F-serratus_M_contig6742.17766.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig6742.17766.1 vs. uniprot
Match: A0A836HYU7_9TRYP (Protein kinase domain-containing protein n=1 Tax=Porcisia hertigi TaxID=2761500 RepID=A0A836HYU7_9TRYP)

HSP 1 Score: 53.9 bits (128), Expect = 8.320e-5
Identity = 22/42 (52.38%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:  430 LSGVEALYRAGFFYRDIKPDNILIGRDDRDRGVLVDFGLHLK 555
            LS +E ++RAG+ + D+KPDNIL GR+D ++  LVDFGL ++
Sbjct:  258 LSSLEHVHRAGYVHADLKPDNILFGREDPEQLYLVDFGLSVR 299
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6742.17766.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836HYU7_9TRYP8.320e-552.38Protein kinase domain-containing protein n=1 Tax=P... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6742contigF-serratus_M_contig6742:20765..23195 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size702
Cds size381
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6742.17766.1prot_F-serratus_M_contig6742.17766.1Fucus serratus malepolypeptideF-serratus_M_contig6742 21086..23195 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932063.656141-UTR-F-serratus_M_contig6742:20764..210851622932063.656141-UTR-F-serratus_M_contig6742:20764..21085Fucus serratus maleUTRF-serratus_M_contig6742 20765..21085 +
1690964128.0267487-UTR-F-serratus_M_contig6742:20764..210851690964128.0267487-UTR-F-serratus_M_contig6742:20764..21085Fucus serratus maleUTRF-serratus_M_contig6742 20765..21085 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932063.6751761-CDS-F-serratus_M_contig6742:21085..214061622932063.6751761-CDS-F-serratus_M_contig6742:21085..21406Fucus serratus maleCDSF-serratus_M_contig6742 21086..21406 +
1690964128.042631-CDS-F-serratus_M_contig6742:21085..214061690964128.042631-CDS-F-serratus_M_contig6742:21085..21406Fucus serratus maleCDSF-serratus_M_contig6742 21086..21406 +
1622932063.6999013-CDS-F-serratus_M_contig6742:21843..218721622932063.6999013-CDS-F-serratus_M_contig6742:21843..21872Fucus serratus maleCDSF-serratus_M_contig6742 21844..21872 +
1690964128.059925-CDS-F-serratus_M_contig6742:21843..218721690964128.059925-CDS-F-serratus_M_contig6742:21843..21872Fucus serratus maleCDSF-serratus_M_contig6742 21844..21872 +
1622932063.7226593-CDS-F-serratus_M_contig6742:23164..231951622932063.7226593-CDS-F-serratus_M_contig6742:23164..23195Fucus serratus maleCDSF-serratus_M_contig6742 23165..23195 +
1690964128.071083-CDS-F-serratus_M_contig6742:23164..231951690964128.071083-CDS-F-serratus_M_contig6742:23164..23195Fucus serratus maleCDSF-serratus_M_contig6742 23165..23195 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6742.17766.1

>prot_F-serratus_M_contig6742.17766.1 ID=prot_F-serratus_M_contig6742.17766.1|Name=mRNA_F-serratus_M_contig6742.17766.1|organism=Fucus serratus male|type=polypeptide|length=127bp
MSKTDDINMDFGTRLCRSRSHVFCRHAYYELPCCHPLSGVEALYRAGFFY
RDIKPDNILIGRDDRDRGVLVDFGLHLKGTEGALQARRPGVAKQAKAVIA
HWKNELARDEGEIAKHSITCRSTCST*
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mRNA from alignment at F-serratus_M_contig6742:20765..23195+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6742.17766.1 ID=mRNA_F-serratus_M_contig6742.17766.1|Name=mRNA_F-serratus_M_contig6742.17766.1|organism=Fucus serratus male|type=mRNA|length=2431bp|location=Sequence derived from alignment at F-serratus_M_contig6742:20765..23195+ (Fucus serratus male)
CGACCACTCCCTTACAGCTCAAGGACGAGCGAGTCGCAGACCTTCAGGCC
GCACACGAAGACTCTGCGGAGGACGTCGAGTATTTCCGTGACGAGGCCGC
TCGTGTTATGTTGACCATATGTAACGCCCAGGGTGATCAAGAGGGCCTCC
TGCAGGAGTTGGAGGAACAACTCGCGTCGGCCTCATGCAAGATGGAGACC
GTCAGGGGTCAGCTCTTGAGTGAGATGGGCGAGCGATAGCCGCCACCTAA
AGATTGGTTCACGACAGTAAAAAATCATCCTGGAAATTCTCTGTCTTCCG
AATAACGATGAAAAAAATAATATGTCTAAGACCGATGATATTAATATGGA
TTTTGGGACAAGACTGTGTCGTTCCAGGTCGCATGTGTTTTGTCGACATG
CCTACTATGAACTCCCTTGCTGCCATCCCCTCAGTGGCGTTGAGGCCTTG
TACAGGGCTGGATTCTTCTATCGGGACATCAAGCCGGACAATATCCTGAT
CGGCAGGGATGACAGGGACAGGGGGGTCCTCGTGGACTTCGGACTGCACT
TGAAGGGCACTGAAGGCGCTCTACAAGCACGCCGACCTGGGGTGGCGAAG
CAGGCGAAGGCGGTCATCGCACACTGGAAAAACGAACTGGCGGTGAGTCA
AGTCGAAGGGGTACATCGCTGGGACTCTCTATTTCATGATCGTTGTATTC
TTTGTTGCCGTTTCGATGAGGCCTCCATATTTTAGAGACCCTCGAGTTGT
GTAGTTGTAATTTTAATTTTCTTTACTATATTGTACATAGTCTATACATA
TATAAATACTTGTATTGCAATATATTGAGAGTATATTTGTTCTGTTTTGT
TTTTTCAGGATTTTTGTGGTACATTTTTTTTTCTTTTTGTCTATGCAACG
CTGGAATTGGAGCGCGCGCAGGTTTGCCTTCAGAAGCTGCATCTCAAGAG
GCGTCACGGAAGTATGTGAGTGTTCATTCCGAGTCCAACCACCTTGTCCC
CTGCCGATTCTGCTGTTGCTGACCCCTACCCCCCCCCCCCATGCTACCCC
GCTTTCCCAAAAATCGGCGATGACGTCAGAGGGACGAGGGAGAAATCGCC
AAGCACAGGTATTGGGGTCAGCTTTACGAGAGCCTGCCTTGTGCTCGCGA
AAACGAATGACAAGGCTGTAAGGTCTCTCATCACAAATATAAATCTCTAA
GAGTCAGATTTCTCAGATTTCCCGTTTCCGTTTTTTTCTTTCCCAATAAT
AACGCATTTCCAAAAACTGAAAACTCTTCCACTTCAGATCGTGCTAATGC
AACATGTGACGGTACAGCAACTCCTCCAGAGACGCCTCGTTCGATTCTGT
GTAGATGTCAAGGCAAGACTCGCGTAGCGATGTCAACCACCTGAAAATTT
TGCTGCGATGATCTACTGAGGTTAAACAACGTGAATCTCGATGTCTAAAC
GGAAACGGCGAGTCTCGCGATGGGTCAAAATCCTCACTTGTTTGCATCTA
TCTGCCCTTGAAAGGAGGTTTTACCACTCTCCACACCTCGGCACCACTAT
AATAGTACTTGTAGTGATTCGGGAAGGCTGAGTTTGTCTCTCGAATAATT
TAGTCATTGTCATAAGTCTCAACGAGTCTGCTCAACGCAGTTCCCCCCTC
CTTCAGTAGCCATAACTGTTCTGCTAGGTGGAAATAGTTGGAAGAATCTC
CCATCAACGATCTCACCGTGTTGCATCCCCTCACCAACACGGCTGACAGC
CCCACGGGGACTGTGTGTGGATGCTCGGAAGGTCTGGGTCAGTTCAGATT
TTCATAAACGGCACCGCTGTCTGTCCCGTACGAGTACTTGTAGTAGTTTT
TCACTTCTACTGTAGAACGCGATAGTGTGTTGTAGTTGTATCATTAATGC
TATAGTCTACACAGTAGTATACTAATAATATTATTACAACGGTGCTGAGT
CCAACtTTTTTTGTAGGAAGCACTTGATCCACAGCCGATGATTACTCGTA
GTATTATAGTCTATACGGTCATCACATAGTCTAAACGTAGCAGAGTATGG
ATCACCCGGGTAAGATTGTCAATCCTGCTCATGGTCAGCTGAACAGAGAA
AACTGAATATTTCCCTGTCTTCGTTCGCGCCTGAGAATTCGGTCTCACGA
GACGGGTTCAGCCGCCCCGTCCCGCGTTAGCCTCCGCATTCTCCATACTC
AAACGGAATCTGGAATACTGTGTTAATATTATTAGCACTGTTGTACGAAG
CACTGCTGTTCATGTATACTGTTCAGTACGATATCGCTTTATCCAGTGAG
ACTTGGACGCCGCAGCTACGAGCAGAGCACACTCTACTCTACGAGCGTAA
ATCTAATTTGGCTCTCTCCCCCTGTCCTCTTACGATATTTCGCTGGACAG
TATAACATGCCGTTCTACCTGCAGTACCTGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig6742:20765..23195+

>mRNA_F-serratus_M_contig6742.17766.1 ID=mRNA_F-serratus_M_contig6742.17766.1|Name=mRNA_F-serratus_M_contig6742.17766.1|organism=Fucus serratus male|type=CDS|length=762bp|location=Sequence derived from alignment at F-serratus_M_contig6742:20765..23195+ (Fucus serratus male)
ATGTCTAAGACCGATGATATTAATATGGATTTTGGGACAAGACTGTGTCG
TTCCAGGTCGCATGTGTTTTGTCGACATGCCTACTATGAACTCCCTTGCT
GCCATCCCCTCAGTGGCGTTGAGGCCTTGTACAGGGCTGGATTCTTCTAT
CGGGACATCAAGCCGGACAATATCCTGATCGGCAGGGATGACAGGGACAG
GGGGGTCCTCGTGGACTTCGGACTGCACTTGAAGGGCACTGAAGGCGCTC
TACAAGCACGCCGACCTGGGGTGGCGAAGCAGGCGAAGGCGGTCATCGCA
CACTGGAAAAACGAACTGGCGATGTCTAAGACCGATGATATTAATATGGA
TTTTGGGACAAGACTGTGTCGTTCCAGGTCGCATGTGTTTTGTCGACATG
CCTACTATGAACTCCCTTGCTGCCATCCCCTCAGTGGCGTTGAGGCCTTG
TACAGGGCTGGATTCTTCTATCGGGACATCAAGCCGGACAATATCCTGAT
CGGCAGGGATGACAGGGACAGGGGGGTCCTCGTGGACTTCGGACTGCACT
TGAAGGGCACTGAAGGCGCTCTACAAGCACGCCGACCTGGGGTGGCGAAG
CAGGCGAAGGCGGTCATCGCACACTGGAAAAACGAACTGGCGAGGGACGA
GGGAGAAATCGCCAAGCACAGAGGGACGAGGGAGAAATCGCCAAGCACAG
TATAACATGCCGTTCTACCTGCAGTACCTGATATAACATGCCGTTCTACC
TGCAGTACCTGA
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