mRNA_F-serratus_M_contig672.17755.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig672.17755.1
Unique NamemRNA_F-serratus_M_contig672.17755.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig672.17755.1 vs. uniprot
Match: D7G2Y5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Y5_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 1.080e-15
Identity = 61/165 (36.97%), Postives = 80/165 (48.48%), Query Frame = 1 
Query:    1 DIGDDNAAIYNAGKINIKGDAVFQDIVANNFDNTEAGAAIFNEEGANFFFKSGAAATFTRCRGTHRGVGALRNKGRFKFSGPANFTLCESAIDNL-SPGWITLPDGSVFSQNFDVGPRA------GGAITNLAGATLDVPEDITFSGNSVEESPSCENIYFQESE 474
            D G++   IYN GK+NIKG+AVFQ++ A      EAG AIFN  GA F FK GA A F  C       GA+ N G FK SGPA    C +    + S G+  L +GSVF+ +    P        GG +T +   T D   D             C  +Y++E +
Sbjct:  213 DEGNNGGGIYNLGKVNIKGNAVFQNLRA------EAGGAIFNGSGAEFRFKKGATADFIDCLSFDGIGGAVFNAGYFKLSGPAEVVECRAPTFVVGSSGYTRLSEGSVFNGDGSDYPEPIMFVMEGGRLTGVGKVTFDNAADT-----------GCGTVYYEEGD 360
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BLAST of mRNA_F-serratus_M_contig672.17755.1 vs. uniprot
Match: A0A6H5JYQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYQ0_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 1.770e-15
Identity = 62/165 (37.58%), Postives = 83/165 (50.30%), Query Frame = 1 
Query:    1 DIGDDNAAIYNAGKINIKGDAVFQDIVANNFDNTEAGAAIFNEEGANFFFKSGAAATFTRCRGTHRGVGALRNKGRFKFSGPANFTLCESAIDNL-SPGWITLPDGSVFSQNFDVGP------RAGGAITNLAGATLDVPEDITFSGNSVEESPSCENIYFQESE 474
            D G++   IYN GK+NIKG+A+FQ++ A      EAG AIFN  GA F FK GA A F  C       GA+ N G FK SGPA    C +    + S G+  L +GSVF+ +    P      R GG +T +   T D         N+ E    C  +Y++E +
Sbjct:  447 DEGNNGGGIYNLGKVNIKGNALFQNLRA------EAGGAIFNGSGAEFRFKKGATADFIDCLSFDGTGGAVFNAGYFKLSGPAEVVECRAPTFVVGSSGYTRLSEGSVFNGDGYEYPEPIILVREGGRLTGVGKVTFD---------NAAETG--CGTVYYEEGD 594
[Close]
BLAST of mRNA_F-serratus_M_contig672.17755.1 vs. uniprot
Match: D7FGT1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGT1_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 4.120e-7
Identity = 47/141 (33.33%), Postives = 65/141 (46.10%), Query Frame = 1 
Query:    1 DIGDDNAAIYNAGKINIKGDAVFQDIVANNFDNTEAGAAIFNEEGANFFFKSGAAATFTRCRGTHRGVGALRNKGRFKFSGPANFTLCES-AIDNLSPGWITLPDGSVFSQNFDVGPRAGGAITNLAGATLDVPEDITFSG 420
            D G     IYN G++ I GD+ F+DI A+      +G AI+N EGA F+F + A+A F            L N G F+FSGPA F   ++  I         L + S F   FD     G A++    A   +P  + F G
Sbjct:  216 DFGGQGGGIYNLGEVTIAGDSRFEDISAS------SGVAIYNGEGAEFYFTNDASAFFRDLNNRDSVGSGLTNLGYFEFSGPALFVEADAPVIVATETSQTILSENSAF-WTFD--EEFGEALSVDEAADFTIPASVVFVG 347
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig672.17755.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G2Y5_ECTSI1.080e-1536.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JYQ0_9PHAE1.770e-1537.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FGT1_ECTSI4.120e-733.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig672contigF-serratus_M_contig672:193714..196471 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size839
Cds size525
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig672.17755.1prot_F-serratus_M_contig672.17755.1Fucus serratus malepolypeptideF-serratus_M_contig672 194028..196471 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932062.5560768-UTR-F-serratus_M_contig672:193713..1940271622932062.5560768-UTR-F-serratus_M_contig672:193713..194027Fucus serratus maleUTRF-serratus_M_contig672 193714..194027 -
1690964127.4789963-UTR-F-serratus_M_contig672:193713..1940271690964127.4789963-UTR-F-serratus_M_contig672:193713..194027Fucus serratus maleUTRF-serratus_M_contig672 193714..194027 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932062.5757627-CDS-F-serratus_M_contig672:194027..1941231622932062.5757627-CDS-F-serratus_M_contig672:194027..194123Fucus serratus maleCDSF-serratus_M_contig672 194028..194123 -
1690964127.4913142-CDS-F-serratus_M_contig672:194027..1941231690964127.4913142-CDS-F-serratus_M_contig672:194027..194123Fucus serratus maleCDSF-serratus_M_contig672 194028..194123 -
1622932062.5943627-CDS-F-serratus_M_contig672:194709..1948361622932062.5943627-CDS-F-serratus_M_contig672:194709..194836Fucus serratus maleCDSF-serratus_M_contig672 194710..194836 -
1690964127.5007246-CDS-F-serratus_M_contig672:194709..1948361690964127.5007246-CDS-F-serratus_M_contig672:194709..194836Fucus serratus maleCDSF-serratus_M_contig672 194710..194836 -
1622932062.616381-CDS-F-serratus_M_contig672:195582..1956951622932062.616381-CDS-F-serratus_M_contig672:195582..195695Fucus serratus maleCDSF-serratus_M_contig672 195583..195695 -
1690964127.5103576-CDS-F-serratus_M_contig672:195582..1956951690964127.5103576-CDS-F-serratus_M_contig672:195582..195695Fucus serratus maleCDSF-serratus_M_contig672 195583..195695 -
1622932062.6343658-CDS-F-serratus_M_contig672:195945..1960291622932062.6343658-CDS-F-serratus_M_contig672:195945..196029Fucus serratus maleCDSF-serratus_M_contig672 195946..196029 -
1690964127.527449-CDS-F-serratus_M_contig672:195945..1960291690964127.527449-CDS-F-serratus_M_contig672:195945..196029Fucus serratus maleCDSF-serratus_M_contig672 195946..196029 -
1622932062.6529062-CDS-F-serratus_M_contig672:196366..1964711622932062.6529062-CDS-F-serratus_M_contig672:196366..196471Fucus serratus maleCDSF-serratus_M_contig672 196367..196471 -
1690964127.5390418-CDS-F-serratus_M_contig672:196366..1964711690964127.5390418-CDS-F-serratus_M_contig672:196366..196471Fucus serratus maleCDSF-serratus_M_contig672 196367..196471 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig672.17755.1

>prot_F-serratus_M_contig672.17755.1 ID=prot_F-serratus_M_contig672.17755.1|Name=mRNA_F-serratus_M_contig672.17755.1|organism=Fucus serratus male|type=polypeptide|length=175bp
DIGDDNAAIYNAGKINIKGDAVFQDIVANNFDNTEAGAAIFNEEGANFFF
KSGAAATFTRCRGTHRGVGALRNKGRFKFSGPANFTLCESAIDNLSPGWI
TLPDGSVFSQNFDVGPRAGGAITNLAGATLDVPEDITFSGNSVEESPSCE
NIYFQESEGIWQTDYENEVFTCGS*
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mRNA from alignment at F-serratus_M_contig672:193714..196471-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig672.17755.1 ID=mRNA_F-serratus_M_contig672.17755.1|Name=mRNA_F-serratus_M_contig672.17755.1|organism=Fucus serratus male|type=mRNA|length=2758bp|location=Sequence derived from alignment at F-serratus_M_contig672:193714..196471- (Fucus serratus male)
GACATCGGTGACGACAACGCCGCTATATACAACGCAGGAAAGATAAATAT
TAAGGGTGACGCCGTATTCCAGGATATCGTCGCCAATAATTTCGACAACA
CCGAGGTCAGCGTTGGGGCTTTGGCTCGACATTCATATCATTGCGAGTTC
CAAAGTAAAAACAAAACAATGTGTGTTGGGACGAGGGGGCACCGCTTGAT
GTCTTTTGTTAGCAGCGATATAAAAATTAATCTAATAATCCGTCTCCTCT
GGCGGCACATAAATCGCAGCCTTTGTAGCATTGCTCTCATTCGAGAGAGC
TGTACTATACGCACCATGCCTCCTGGAATATTGTTTGGATTTTATGCGTG
TTGTGTATTTTTCCGCATATTACTTCTTCGTGGTCTCATCAGCTGAGTTC
TGTCCCACTGGGTGGATGCCTCGCCCGCTTACGGTTTCTCAGGCTGGCGC
AGCAATCTTCAACGAAGAGGGCGCAAACTTTTTCTTCAAATCCGGTGCCG
CGGCAACATTCACTCGATGTCGAGGAGTGAGTGCGTGAATGAGTTTAACA
AAATATTTTTAGAGGCTGTCTTTGTAGTAAAAGTATACCACGTAATAGTA
TAGCTACTTTAAGACCAGAAATATAAGGACGGATTAAATTTATCTTCCTA
TTATAAGCGGTTTGCCGTGCCTTATATTTTCTAGCAAAAACAAAATGTTA
CGGTAGGTCACGGATTGTTGATCCTGCTCACCGACTTGTCTGTTTTTTAT
CTTTTGTCACCGCGCACGCTCGCTAGACCCACCGGGGAGTCGGAGCATTA
CGCAACAAGGGTCGTTTCAAGTTCAGCGGTCCTGCCAACTTCACTCTGTG
CGAGTCTGCTATCGACAACCTTTCCCCAGGGTGGATAACGTGAGACTCCC
ACGCTTCTCGAGGAGATCACTGGTGAATCAAATCGGGCAGTATAACCGCA
CAGACGTTGGCATTTTGTTGAAATATTAACTATCTGAAGGAAATTGTTTT
TGTTTTATGAAGACGAACTTTTAAGGGGGGCGGGGCGGGGGAGGGTGGAT
GGAGGCCAGCTGTTGTTAAGTGGGAATTCCGTCCAATATTTTGGCCATTA
CAAAGTCTTCTACGTTAGTAATACAGTCTGTGCTCAGTAAATTGCAAGGC
TTAATCGTCTTATGTGCTCCAAGAGAGAAAGGGTGGAAAGGTGGGAGGGT
CGAGGAAGTTCTCGAGAACAGCTCGTCTTGGAAAATGCAAATGATTATCT
CCGCATAGAGCTGCCATGCAGTTGTAGACGTGTCTGACTGGATCGTACTG
TATAGGAATGTGTTTTCCTAGTTATAGGGCACATACTGTATTATTGGTGA
TCGCGCTGTAGAGCTTCCGATGACGCCTTGGGGCAGGAGCGGTGTCTGAC
GTATTAAAGTCTTGGCCATTTTCTATCATTTCTACTCAAAAATATCGCTA
TGACTTGCTCACAAGAGAAACTCGAATCGACCACGGAATCATACGAGGTT
GCAATAAATAATAAAGAAGCACTAGGGATGCATCGCCATAAGTATATGGA
CCAGACATCTCCTCCTGTTGTTGGAATCAGAAAGACATGACATCAAACAC
ATACCTTGGCCGGATTAACGTTCTTCTCTGCACAGGCTTCCGGACGGGAG
TGTGTTCTCGCAGAACTTCGACGTAGGACCTCGTGCTGGTGGTGCAATTA
CAAACCTGGCCGGCGCAACGCTAGACGTCCCGGAAGACATAACGTTTTCA
GGCAACTCTGTGGTAAGTTGTTGTAGCGTTATCGCTACACCTCCCCCACG
CCATTATGTTCGTAAGTGTTCAAGGATTGGGACGACAGCTGGAATAGTGT
GATCAATTATTATGCGCCCGGAATGTCCTAAAAAAGTGTGTGCCTCATGC
TCTATGGTTTTTATGTGTCTTAATTTTGTGCCATTCTTCGAGCAACTTGT
ACATAACATGTAGAAGTGCCATTTTGTCTAGATGTAAGTCGTCGTTCTAG
CTATGGCGCACTATCTTCCCGACATTTTTTCTGATAGGAAATAAACATGC
TATGCCTCATCAGCCGGTACCATGTGGCTAGTCCATCCATCCGCTGTCAT
TGCAAGGTTATTGCATTCTTTTACTGTGAATTTGCTTCACGCGCCATGTA
TTTTGTACTTCATTTGCGACGTTCACTGGTGAATGTTGTGGAGCTGTTTT
TATAGTTCCAAAAATAGACTTTGCTTCTTTTGGTGGCCGCTGTATTTTAC
TGGTGTCGTCCAATTATTCACAGCTCTACCAAATGCCTTGTGAATATCAC
GTTGGATGAACCCTGTAATTTCTGTTTCTTTTCAACTATAACATTCAGGA
AGAGAGCCCGTCCTGCGAAAACATCTACTTCCAGGAATCCGAGGGCATCT
GGCAGACAGACTATGAGAACGAAGTGTTCACGTGCGGGTCCTAGCTAAAC
ATGTCAGCAGTTGATGCCTCGCCTCGTTCGTGCAAGGCACTCACGAGAAA
ACCGTTGAGAACTCATTCTTAAGAGCTTCGAGAGTTGGGTGCACACCGGA
AGCAAAGTGTTAACGGGCTAAATCCCTCGGGAAATGCCAACTCACCGTTC
GTCGCCCGAGTGGTCTAGTAGGTAACCTGCATACCTGCTAGTGCGGAAGT
CGTGAGTTCGATTCTTGGCTTAGTCAGAATTTGTGTTCTTTCTTTCGTAA
CGGAAAGCGTGGGAACGTGAGTAAGTAAAATTCAACCATTGGTTGACGAG
TTGTAAGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig672:193714..196471-

>mRNA_F-serratus_M_contig672.17755.1 ID=mRNA_F-serratus_M_contig672.17755.1|Name=mRNA_F-serratus_M_contig672.17755.1|organism=Fucus serratus male|type=CDS|length=1050bp|location=Sequence derived from alignment at F-serratus_M_contig672:193714..196471- (Fucus serratus male)
GACATCGGTGACGACAACGCCGCTATATACAACGCAGGAAAGATAAATAT
TAAGGGTGACGCCGTATTCCAGGATATCGTCGCCAATAATTTCGACAACA
CCGAGGACATCGGTGACGACAACGCCGCTATATACAACGCAGGAAAGATA
AATATTAAGGGTGACGCCGTATTCCAGGATATCGTCGCCAATAATTTCGA
CAACACCGAGGCTGGCGCAGCAATCTTCAACGAAGAGGGCGCAAACTTTT
TCTTCAAATCCGGTGCCGCGGCAACATTCACTCGATGTCGAGGAGCTGGC
GCAGCAATCTTCAACGAAGAGGGCGCAAACTTTTTCTTCAAATCCGGTGC
CGCGGCAACATTCACTCGATGTCGAGGAACCCACCGGGGAGTCGGAGCAT
TACGCAACAAGGGTCGTTTCAAGTTCAGCGGTCCTGCCAACTTCACTCTG
TGCGAGTCTGCTATCGACAACCTTTCCCCAGGGTGGATAACACCCACCGG
GGAGTCGGAGCATTACGCAACAAGGGTCGTTTCAAGTTCAGCGGTCCTGC
CAACTTCACTCTGTGCGAGTCTGCTATCGACAACCTTTCCCCAGGGTGGA
TAACGCTTCCGGACGGGAGTGTGTTCTCGCAGAACTTCGACGTAGGACCT
CGTGCTGGTGGTGCAATTACAAACCTGGCCGGCGCAACGCTAGACGTCCC
GGAAGACATAACGTTTTCAGGCAACTCTGTGGCTTCCGGACGGGAGTGTG
TTCTCGCAGAACTTCGACGTAGGACCTCGTGCTGGTGGTGCAATTACAAA
CCTGGCCGGCGCAACGCTAGACGTCCCGGAAGACATAACGTTTTCAGGCA
ACTCTGTGGAAGAGAGCCCGTCCTGCGAAAACATCTACTTCCAGGAATCC
GAGGGCATCTGGCAGACAGACTATGAGAACGAAGTGTTCACGTGCGGGTC
CTAGGAAGAGAGCCCGTCCTGCGAAAACATCTACTTCCAGGAATCCGAGG
GCATCTGGCAGACAGACTATGAGAACGAAGTGTTCACGTGCGGGTCCTAG
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