mRNA_F-serratus_M_contig67.17731.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig67.17731.1
Unique NamemRNA_F-serratus_M_contig67.17731.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig67.17731.1 vs. uniprot
Match: A0A6H5KJI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJI1_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 1.190e-12
Identity = 39/65 (60.00%), Postives = 44/65 (67.69%), Query Frame = 1 
Query:    1 KVDMVTHGQQSWALTGLGSWRDRSLNTGLSNTEKSAAFVRARQREAKRAMLGTLTAVPMNGETGP 195
            KVDM T+G QSWALT LG+WR +SL  G S   K A FV++RQREAKRAMLGT         TGP
Sbjct:   54 KVDMATYGHQSWALTNLGAWRSQSL--GASGGGKPADFVKSRQREAKRAMLGTAAXXXXXXXTGP 116
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig67.17731.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KJI1_9PHAE1.190e-1260.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig67contigF-serratus_M_contig67:743018..743909 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-06_010470.1
Exons1
Model size892
Cds size258
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig67.17731.1prot_F-serratus_M_contig67.17731.1Fucus serratus malepolypeptideF-serratus_M_contig67 743027..743284 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932058.5479226-UTR-F-serratus_M_contig67:743017..7430261622932058.5479226-UTR-F-serratus_M_contig67:743017..743026Fucus serratus maleUTRF-serratus_M_contig67 743018..743026 +
1690964125.239226-UTR-F-serratus_M_contig67:743017..7430261690964125.239226-UTR-F-serratus_M_contig67:743017..743026Fucus serratus maleUTRF-serratus_M_contig67 743018..743026 +
1622932058.5811229-UTR-F-serratus_M_contig67:743284..7439091622932058.5811229-UTR-F-serratus_M_contig67:743284..743909Fucus serratus maleUTRF-serratus_M_contig67 743285..743909 +
1690964125.2682767-UTR-F-serratus_M_contig67:743284..7439091690964125.2682767-UTR-F-serratus_M_contig67:743284..743909Fucus serratus maleUTRF-serratus_M_contig67 743285..743909 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932058.566691-CDS-F-serratus_M_contig67:743026..7432841622932058.566691-CDS-F-serratus_M_contig67:743026..743284Fucus serratus maleCDSF-serratus_M_contig67 743027..743284 +
1690964125.249958-CDS-F-serratus_M_contig67:743026..7432841690964125.249958-CDS-F-serratus_M_contig67:743026..743284Fucus serratus maleCDSF-serratus_M_contig67 743027..743284 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig67.17731.1

>prot_F-serratus_M_contig67.17731.1 ID=prot_F-serratus_M_contig67.17731.1|Name=mRNA_F-serratus_M_contig67.17731.1|organism=Fucus serratus male|type=polypeptide|length=86bp
MVTHGQQSWALTGLGSWRDRSLNTGLSNTEKSAAFVRARQREAKRAMLGT
LTAVPMNGETGPLSGVPASLNGEGSSDIVSKDMSR*
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mRNA from alignment at F-serratus_M_contig67:743018..743909+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig67.17731.1 ID=mRNA_F-serratus_M_contig67.17731.1|Name=mRNA_F-serratus_M_contig67.17731.1|organism=Fucus serratus male|type=mRNA|length=892bp|location=Sequence derived from alignment at F-serratus_M_contig67:743018..743909+ (Fucus serratus male)
AAGGTCGACATGGTTACTCACGGTCAGCAATCATGGGCGCTGACGGGGCT
CGGCTCTTGGCGGGATCGGTCGTTGAACACAGGCCTTTCAAACACTGAAA
AATCGGCGGCGTTCGTGAGGGCCAGGCAGCGGGAGGCCAAGAGAGCTATG
CTAGGGACTTTGACCGCGGTACCCATGAATGGTGAAACCGGCCCACTATC
TGGTGTTCCTGCATCACTGAACGGCGAAGGTAGCAGCGACATCGTCAGCA
AGGATATGTCTCGGTGATAACGGCTGCCGTCTATTAATACTATCATTAGC
GGACATGGTTCCATGTTACGCGAAAGCCGAAGCGTTCATTTCCATCGAAG
GGGGGGAGCTCAAGCGTGTTGAGTGGAAAAACGCCGTGGAACGGTGGCAG
CTCTTGTTGGTGTGATGTAGTTAGTGATACAAGGCGGCAATTTGAGCAAT
GGCATAGCTACCCGTGTCGAGATTTTGGCCCTTTTCGCCTCTGAAGGCGC
AGCTTGGAGTTACGAGGATCGGGGAGGGGCCGCGTGTCTCTCATATCTAA
GGGAGCCATGTTGGCACTTTTGGCTAATTGCGAATGGGTTTGTTGAACCG
CTGAACGCCGCTGCGCTCCTCGTAGCATCTGTAATAAAATTGACCTTATT
CGACCTTTTTTCATAGGAAAATGATATGCATGCTTCTCCAATGCTGGTCG
AACGCGATGAACAACATCGCTCGCAAAGTATACGATGCATCCCTGCCGTA
AAACTGTTTTTACTGACAGGGATTAAAATTAGTTATCCTTGTAGTACTGT
AGCCCCTATATCATTTTTAAACCCAGCGACTAAATGAAGATGGAAGGAAG
GCAGTGGTGGAGAGAGTAGATTATATATGGGGGGCACGAGAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig67:743018..743909+

>mRNA_F-serratus_M_contig67.17731.1 ID=mRNA_F-serratus_M_contig67.17731.1|Name=mRNA_F-serratus_M_contig67.17731.1|organism=Fucus serratus male|type=CDS|length=516bp|location=Sequence derived from alignment at F-serratus_M_contig67:743018..743909+ (Fucus serratus male)
ATGGTTACTCACGGTCAGCAATCATGGGCGCTGACGGGGCTCGGCTCTTG
GCGGGATCGGTCGTTGAACACAGGCCTTTCAAACACTGAAAAATCGGCGG
CGTTCGTGAGGGCCAGGCAGCGGGAGGCCAAGAGAGCTATGCTAGGGACT
TTGACCGCGGTACCCATGAATGGTGAAACCGGCCCACTATCTGGTGTTCC
TGCATCACTGAACGGCGAAGGTAGCAGCGACATCGTCAGCAAGGATATGT
CTCGGTGAATGGTTACTCACGGTCAGCAATCATGGGCGCTGACGGGGCTC
GGCTCTTGGCGGGATCGGTCGTTGAACACAGGCCTTTCAAACACTGAAAA
ATCGGCGGCGTTCGTGAGGGCCAGGCAGCGGGAGGCCAAGAGAGCTATGC
TAGGGACTTTGACCGCGGTACCCATGAATGGTGAAACCGGCCCACTATCT
GGTGTTCCTGCATCACTGAACGGCGAAGGTAGCAGCGACATCGTCAGCAA
GGATATGTCTCGGTGA
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