mRNA_F-serratus_M_contig67.17718.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig67.17718.1
Unique NamemRNA_F-serratus_M_contig67.17718.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig67.17718.1 vs. uniprot
Match: A0A6H5JFG2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG2_9PHAE)

HSP 1 Score: 196 bits (498), Expect = 8.180e-56
Identity = 119/301 (39.53%), Postives = 170/301 (56.48%), Query Frame = 1
Query:    1 WNNKFCDDMTAIGFEQAKADPFVSRKVVDGGAEMVAVVHVDGILAHAKDQATMDRFAAELGQNFRLKDTRDAEYYMGCHITRNRKARELKFVQRLYVESLVMKFDVKKKTKIPAASGVPTLSKADEPRNPEEKEEMRKFPYREAVGVLMWTATMTRSDIACAVRAVARFCENPGPAHKNAVMKIFQYFLHTKEWRIMYG-GQGCGLCMEAYTDSNFGACLNTRRSVSGAVSMLAKGAISWHSRMQEVTASGTSEAEYVALSEVVEDVLLLRQVQEFMEPSMRVGAINMFEDDEGAIKLATN 900
            W+      + A+GFEQ  AD  V R + DG   ++ VVHVD I A   ++   D+F A+L ++  +K+  +  +Y GC   RN++   L   Q+ + + L  ++ V     +P +SGV  LS  D        E   +FP+RE VG LMW AT TR DIA AVRAVAR+C +P   H NA M I  Y   T  + I +  G   G  ++ Y D++F +    RRSVSG +     GA+SW SR Q+     T+EAEYVAL +VV+++L LRQ+  FM P + +  I +FED++GAI+LA N
Sbjct:  109 WHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFA-VGERERCDKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGV-KLSDFDA------DEVATEFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQN 401          
BLAST of mRNA_F-serratus_M_contig67.17718.1 vs. uniprot
Match: A0A6H5J4N2_9PHAE (Integrase catalytic domain-containing protein n=18 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J4N2_9PHAE)

HSP 1 Score: 196 bits (498), Expect = 6.820e-53
Identity = 119/301 (39.53%), Postives = 170/301 (56.48%), Query Frame = 1
Query:    1 WNNKFCDDMTAIGFEQAKADPFVSRKVVDGGAEMVAVVHVDGILAHAKDQATMDRFAAELGQNFRLKDTRDAEYYMGCHITRNRKARELKFVQRLYVESLVMKFDVKKKTKIPAASGVPTLSKADEPRNPEEKEEMRKFPYREAVGVLMWTATMTRSDIACAVRAVARFCENPGPAHKNAVMKIFQYFLHTKEWRIMYG-GQGCGLCMEAYTDSNFGACLNTRRSVSGAVSMLAKGAISWHSRMQEVTASGTSEAEYVALSEVVEDVLLLRQVQEFMEPSMRVGAINMFEDDEGAIKLATN 900
            W+      + A+GFEQ  AD  V R + DG   ++ VVHVD I A   ++   D+F A+L ++  +K+  +  +Y GC   RN++   L   Q+ + + L  ++ V     +P +SGV  LS  D        E   +FP+RE VG LMW AT TR DIA AVRAVAR+C +P   H NA M I  Y   T  + I +  G   G  ++ Y D++F +    RRSVSG +     GA+SW SR Q+     T+EAEYVAL +VV+++L LRQ+  FM P + +  I +FED++GAI+LA N
Sbjct: 1445 WHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFA-VGERERCDKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGV-KLSDFDA------DEVATEFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQN 1737          
BLAST of mRNA_F-serratus_M_contig67.17718.1 vs. uniprot
Match: A0A6H5L867_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L867_9PHAE)

HSP 1 Score: 196 bits (498), Expect = 6.830e-53
Identity = 119/301 (39.53%), Postives = 170/301 (56.48%), Query Frame = 1
Query:    1 WNNKFCDDMTAIGFEQAKADPFVSRKVVDGGAEMVAVVHVDGILAHAKDQATMDRFAAELGQNFRLKDTRDAEYYMGCHITRNRKARELKFVQRLYVESLVMKFDVKKKTKIPAASGVPTLSKADEPRNPEEKEEMRKFPYREAVGVLMWTATMTRSDIACAVRAVARFCENPGPAHKNAVMKIFQYFLHTKEWRIMYG-GQGCGLCMEAYTDSNFGACLNTRRSVSGAVSMLAKGAISWHSRMQEVTASGTSEAEYVALSEVVEDVLLLRQVQEFMEPSMRVGAINMFEDDEGAIKLATN 900
            W+      + A+GFEQ  AD  V R + DG   ++ VVHVD I A   ++   D+F A+L ++  +K+  +  +Y GC   RN++   L   Q+ + + L  ++ V     +P +SGV  LS  D        E   +FP+RE VG LMW AT TR DIA AVRAVAR+C +P   H NA M I  Y   T  + I +  G   G  ++ Y D++F +    RRSVSG +     GA+SW SR Q+     T+EAEYVAL +VV+++L LRQ+  FM P + +  I +FED++GAI+LA N
Sbjct: 1231 WHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFA-VGERERCDKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGV-KLSDFDA------DEVATEFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQN 1523          
BLAST of mRNA_F-serratus_M_contig67.17718.1 vs. uniprot
Match: A0A6H5KBD4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBD4_9PHAE)

HSP 1 Score: 196 bits (498), Expect = 7.150e-53
Identity = 119/301 (39.53%), Postives = 170/301 (56.48%), Query Frame = 1
Query:    1 WNNKFCDDMTAIGFEQAKADPFVSRKVVDGGAEMVAVVHVDGILAHAKDQATMDRFAAELGQNFRLKDTRDAEYYMGCHITRNRKARELKFVQRLYVESLVMKFDVKKKTKIPAASGVPTLSKADEPRNPEEKEEMRKFPYREAVGVLMWTATMTRSDIACAVRAVARFCENPGPAHKNAVMKIFQYFLHTKEWRIMYG-GQGCGLCMEAYTDSNFGACLNTRRSVSGAVSMLAKGAISWHSRMQEVTASGTSEAEYVALSEVVEDVLLLRQVQEFMEPSMRVGAINMFEDDEGAIKLATN 900
            W+      + A+GFEQ  AD  V R + DG   ++ VVHVD I A   ++   D+F A+L ++  +K+  +  +Y GC   RN++   L   Q+ + + L  ++ V     +P +SGV  LS  D        E   +FP+RE VG LMW AT TR DIA AVRAVAR+C +P   H NA M I  Y   T  + I +  G   G  ++ Y D++F +    RRSVSG +     GA+SW SR Q+     T+EAEYVAL +VV+++L LRQ+  FM P + +  I +FED++GAI+LA N
Sbjct: 1299 WHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFA-VGERERCDKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGV-KLSDFDA------DEVATEFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQN 1591          
BLAST of mRNA_F-serratus_M_contig67.17718.1 vs. uniprot
Match: A0A6H5JG40_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG40_9PHAE)

HSP 1 Score: 195 bits (496), Expect = 1.190e-52
Identity = 119/301 (39.53%), Postives = 169/301 (56.15%), Query Frame = 1
Query:    1 WNNKFCDDMTAIGFEQAKADPFVSRKVVDGGAEMVAVVHVDGILAHAKDQATMDRFAAELGQNFRLKDTRDAEYYMGCHITRNRKARELKFVQRLYVESLVMKFDVKKKTKIPAASGVPTLSKADEPRNPEEKEEMRKFPYREAVGVLMWTATMTRSDIACAVRAVARFCENPGPAHKNAVMKIFQYFLHTKEWRIMYG-GQGCGLCMEAYTDSNFGACLNTRRSVSGAVSMLAKGAISWHSRMQEVTASGTSEAEYVALSEVVEDVLLLRQVQEFMEPSMRVGAINMFEDDEGAIKLATN 900
            W+      + A+GFEQ  AD  V R + DG   ++ VVHVD I A   ++   D+F A+L ++  +K+  +  +Y GC   RN++   L   Q+ + + L  ++ V     +P +SGV  LS  D        E    FP+RE VG LMW AT TR DIA AVRAVAR+C +P   H NA M I  Y   T  + I +  G   G  ++ Y D++F +    RRSVSG +     GA+SW SR Q+     T+EAEYVAL +VV+++L LRQ+  FM P + +  I +FED++GAI+LA N
Sbjct:  939 WHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFA-VGERERCDKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGV-KLSDFDA------DEVATDFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPIFEDNQGAIQLAQN 1231          
BLAST of mRNA_F-serratus_M_contig67.17718.1 vs. uniprot
Match: A0A6H5KTL3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTL3_9PHAE)

HSP 1 Score: 177 bits (449), Expect = 2.090e-48
Identity = 108/300 (36.00%), Postives = 164/300 (54.67%), Query Frame = 1
Query:    1 WNNKFCDDMTAIGFEQAKADPFVSRKVVDGGAEMVAVVHVDGILAHAKDQATMDRFAAELGQNFRLKDTRDAEYYMGCHITRNRKARELKFVQRLYVESLVMKFDVKKKTKIPAASGVPTLSKADEPRNPEEKEEMRKFPYREAVGVLMWTATMTRSDIACAVRAVARFCENPGPAHKNAVMKIFQYFLHTKEWRIMYGGQGCGLCMEAYTDSNFGACLNTRRSVSGAVSMLAKGAISWHSRMQEVTASGTSEAEYVALSEVVEDVLLLRQVQEFMEPSMRVGAINMFEDDEGAIKLATN 900
            W     D +   GFEQ KADP V RK+VD    M+ V++VD IL    D+   +   A L + F  K+  + +++ GC I R+ +A  L+  Q  Y++S+V +FDVK  ++IPA  G     K ++       EE  ++P REA+G +MW +T +R D++ AVRAVAR    P   H +A+ KI  Y   T++  I Y  +G GL +  Y D+++ A    RRSVSG  + +    +S  S+ Q + +  ++EAEY+A  E VE+ L LR    F+ P     +I + ED++G I L  N
Sbjct:  182 WGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKRED-------EEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDASY-ADTEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVEEALFLRAELSFVAPETSGSSIQVLEDNQGVIALVQN 471          
BLAST of mRNA_F-serratus_M_contig67.17718.1 vs. uniprot
Match: A0A6A3V8M8_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3V8M8_9STRA)

HSP 1 Score: 169 bits (427), Expect = 2.680e-45
Identity = 108/302 (35.76%), Postives = 173/302 (57.28%), Query Frame = 1
Query:    1 WNNKFCDDMTAIGFEQAKADPFVSRKVVDGGAEMVAVVHVDGILAHAKDQATMDRFAAELGQNFRLKDTRDAEYYMGCHITRNRKARELKFVQRLYVESLVMKFDVK--KKTKIPAASGVPTLSKADEPRNPEEKEEMRKFPYREAVGVLMWTATMTRSDIACAVRAVARFCENPGPAHKNAVMKIFQYFLHTKEWRIMYGGQGCGLCMEAYTDSNFGACLNTRRSVSGAVSMLAKGAISWHSRMQEVTASGTSEAEYVALSEVVEDVLLLRQVQEFMEPSMRVGAINMFEDDEGAIKLATN 900
            WN      + ++GFE A ADP V  +  +G  E +  ++VD +L  ++ +  +    A + + FR+KD   + + +G  I  + + R L   Q+ Y ES++ KF  +  K    P   GV  L+KADEP+  E+K +M+  PYR  VG LM+ A  TR DI+ AV  ++RF ENPG    +A +K+ +Y L TK+  I+Y G      +EAY+D ++    + RRSVSG + ML    + W S  Q+  A  ++EAEY+ALS+ V++ + +R++ E +    +VGA  ++ED++GA+ LA N
Sbjct:  174 WNETIDKHLKSMGFEPADADPCVYTRG-EGEDECIVCLYVDDMLIASRQKTVIASVKAGIAEKFRIKDLGRSRFILGIEIDYDMERRTLGISQKAYTESIIKKFAQENVKPCLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKRWDAGIKVVRYLLKTKDVGIVYDGLLVAQ-LEAYSDEDWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEYMALSDCVQECVWMRRLLEDIGAE-QVGATVIYEDNQGAMALAKN 471          
BLAST of mRNA_F-serratus_M_contig67.17718.1 vs. uniprot
Match: A0A6H5JEF2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEF2_9PHAE)

HSP 1 Score: 167 bits (424), Expect = 3.660e-45
Identity = 106/301 (35.22%), Postives = 162/301 (53.82%), Query Frame = 1
Query:    1 WNNKFCDDMTAIGFEQAKADPFVSRKVVDGGAEMVAVVHVDGILAHAKDQATMDRFAAELGQNFRLKDTRDAEYYMGCHITRNRKARELKFVQRLYVESLVMKFDVKKKTKIPAASGVPTLSKADEPRNPEEKEEMRKFPYREAVGVLMWTATMTRSDIACAVRAVARFCENPGPAHKNAVMKIFQYFLHTKEWRIMYG-GQGCGLCMEAYTDSNFGACLNTRRSVSGAVSMLAKGAISWHSRMQEVTASGTSEAEYVALSEVVEDVLLLRQVQEFMEPSMRVGAINMFEDDEGAIKLATN 900
            W++     +  +GF Q  AD  V R + +G   M+ VVHVD I A  + +   D+F  +L +   +K+  +  +Y  C   R+ +   L+  Q+ + E L  ++ ++    +P    V  L+  DE       E     P+RE VG LMW AT TR DIA AVRAVAR+C +P   H  A + I  Y   T    I +  G   G+ M+ + D+++ +    RRSVSG + M   G ++W SR Q+     T+EAEYVA+++V+++VL LRQV  FM P   +  I +FED++GAI++A N
Sbjct:   85 WHSHLTRCLLLLGFLQCLADACVFRLMEEGRVIMIIVVHVDDIFAVGQKERC-DKFGEDLNEMVPVKNLGELRWYSACFYERDVERGLLRISQQRFAEELAAEYGIEWGRSVPLPVSV-KLTDFDE------NEACADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHN 377          
BLAST of mRNA_F-serratus_M_contig67.17718.1 vs. uniprot
Match: A0A6H5L4G9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G9_9PHAE)

HSP 1 Score: 165 bits (417), Expect = 1.030e-44
Identity = 105/301 (34.88%), Postives = 160/301 (53.16%), Query Frame = 1
Query:    1 WNNKFCDDMTAIGFEQAKADPFVSRKVVDGGAEMVAVVHVDGILAHAKDQATMDRFAAELGQNFRLKDTRDAEYYMGCHITRNRKARELKFVQRLYVESLVMKFDVKKKTKIPAASGVPTLSKADEPRNPEEKEEMRKFPYREAVGVLMWTATMTRSDIACAVRAVARFCENPGPAHKNAVMKIFQYFLHTKEWRIMYG-GQGCGLCMEAYTDSNFGACLNTRRSVSGAVSMLAKGAISWHSRMQEVTASGTSEAEYVALSEVVEDVLLLRQVQEFMEPSMRVGAINMFEDDEGAIKLATN 900
            W+      +  +GF Q  AD  V R + +G   M+ VVHVD I A  + +   D+F  +L +   +K+  +  +Y  C   R+ +   L+  Q+ + E L  ++ ++    +P    V  L+  DE       E     P+RE VG LMW AT TR DIA AVRAVAR+C +P   H  A + I  Y   T    I +  G   G+ M+ + D+++ +    RRSVSG + M   G ++W SR Q+     T+EAEYVA+++V+++VL LRQV  FM P   +  I +FED++GAI++  N
Sbjct:   23 WHAHLTRCLLLLGFLQCLADACVFRLMEEGRVIMIIVVHVDDIFAVGQKERC-DKFGEDLNEMVPVKNLGELRWYSACFYERDVERGLLRISQQRFAEELAAEYGIEWGRSVPLPVSV-KLTDFDE------NEASADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDASMPCIPVFEDNQGAIQIMHN 315          
BLAST of mRNA_F-serratus_M_contig67.17718.1 vs. uniprot
Match: A0A6G0QPY6_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0QPY6_9STRA)

HSP 1 Score: 167 bits (424), Expect = 1.620e-44
Identity = 109/302 (36.09%), Postives = 172/302 (56.95%), Query Frame = 1
Query:    1 WNNKFCDDMTAIGFEQAKADPFVSRKVVDGGAEMVAVVHVDGILAHAKDQATMDRFAAELGQNFRLKDTRDAEYYMGCHITRNRKARELKFVQRLYVESLVMKFDVK--KKTKIPAASGVPTLSKADEPRNPEEKEEMRKFPYREAVGVLMWTATMTRSDIACAVRAVARFCENPGPAHKNAVMKIFQYFLHTKEWRIMYGGQGCGLCMEAYTDSNFGACLNTRRSVSGAVSMLAKGAISWHSRMQEVTASGTSEAEYVALSEVVEDVLLLRQVQEFMEPSMRVGAINMFEDDEGAIKLATN 900
            WN      + ++GFE A ADP V  K  +G  E +  ++VD +L  ++ +A +    A + + FR+KD   A   +G  I  + + R L   Q+ Y ES++ KF  +  K    P   GV  L+KADEP+  E+K +M+  PYR  +G LM+    TR DI  AV  ++RF ENPG  H +A +K+    L TK+  I+Y G   G  +EAY+D+++    + RRSVSG + ML    + W S  Q+    G++EAEY+ALS+ V++ + +R++ + +    +VGA  ++ED++GA+ LA N
Sbjct:  165 WNETIDKHLKSMGFEPADADPCVYTKG-EGDDECIVGLYVDDMLIASRQKAAIASVKAGIAEKFRIKDLGRARSILGIAIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLIGSLMYLVCGTRPDILVAVVKLSRFLENPGEKHWDAGIKVVHCLLKTKDVCIVYDGL-LGTQLEAYSDTDWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKAVGLGSTEAEYMALSDCVKECVWMRRLLKDIGAD-QVGATVIYEDNQGAMALAKN 462          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig67.17718.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JFG2_9PHAE8.180e-5639.53Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5J4N2_9PHAE6.820e-5339.53Integrase catalytic domain-containing protein n=18... [more]
A0A6H5L867_9PHAE6.830e-5339.53Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KBD4_9PHAE7.150e-5339.53Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JG40_9PHAE1.190e-5239.53Integrase catalytic domain-containing protein n=3 ... [more]
A0A6H5KTL3_9PHAE2.090e-4836.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3V8M8_9STRA2.680e-4535.76Retrovirus-related Pol polyprotein from transposon... [more]
A0A6H5JEF2_9PHAE3.660e-4535.22Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L4G9_9PHAE1.030e-4434.88Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6G0QPY6_9STRA1.620e-4436.09Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig67contigF-serratus_M_contig67:338561..339460 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score162.5
Seed ortholog evalue2.9e-37
Seed eggNOG ortholog164328.Phyra85763
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size900
Cds size876
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932055.7809796-CDS-F-serratus_M_contig67:338560..3394361622932055.7809796-CDS-F-serratus_M_contig67:338560..339436Fucus serratus maleCDSF-serratus_M_contig67 338561..339436 -
1690964123.8388755-CDS-F-serratus_M_contig67:338560..3394361690964123.8388755-CDS-F-serratus_M_contig67:338560..339436Fucus serratus maleCDSF-serratus_M_contig67 338561..339436 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932055.8055272-UTR-F-serratus_M_contig67:339436..3394601622932055.8055272-UTR-F-serratus_M_contig67:339436..339460Fucus serratus maleUTRF-serratus_M_contig67 339437..339460 -
1690964123.8525403-UTR-F-serratus_M_contig67:339436..3394601690964123.8525403-UTR-F-serratus_M_contig67:339436..339460Fucus serratus maleUTRF-serratus_M_contig67 339437..339460 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig67.17718.1prot_F-serratus_M_contig67.17718.1Fucus serratus malepolypeptideF-serratus_M_contig67 338561..339436 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig67.17718.1

>prot_F-serratus_M_contig67.17718.1 ID=prot_F-serratus_M_contig67.17718.1|Name=mRNA_F-serratus_M_contig67.17718.1|organism=Fucus serratus male|type=polypeptide|length=292bp
MTAIGFEQAKADPFVSRKVVDGGAEMVAVVHVDGILAHAKDQATMDRFAA
ELGQNFRLKDTRDAEYYMGCHITRNRKARELKFVQRLYVESLVMKFDVKK
KTKIPAASGVPTLSKADEPRNPEEKEEMRKFPYREAVGVLMWTATMTRSD
IACAVRAVARFCENPGPAHKNAVMKIFQYFLHTKEWRIMYGGQGCGLCME
AYTDSNFGACLNTRRSVSGAVSMLAKGAISWHSRMQEVTASGTSEAEYVA
LSEVVEDVLLLRQVQEFMEPSMRVGAINMFEDDEGAIKLATN
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mRNA from alignment at F-serratus_M_contig67:338561..339460-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig67.17718.1 ID=mRNA_F-serratus_M_contig67.17718.1|Name=mRNA_F-serratus_M_contig67.17718.1|organism=Fucus serratus male|type=mRNA|length=900bp|location=Sequence derived from alignment at F-serratus_M_contig67:338561..339460- (Fucus serratus male)
TGGAATAATAAATTCTGTGACGACATGACGGCGATTGGGTTCGAGCAGGC AAAGGCGGACCCGTTCGTGTCCCGCAAGGTCGTTGACGGTGGGGCGGAGA TGGTGGCGGTCGTACACGTAGACGGCATCCTTGCCCACGCCAAAGACCAA GCGACGATGGATAGATTCGCGGCCGAGCTTGGGCAGAATTTCAGATTGAA GGACACGAGGGACGCTGAGTACTACATGGGTTGTCACATCACCAGGAACC GCAAGGCGCGCGAGTTGAAGTTCGTCCAACGCCTGTACGTGGAGTCACTG GTAATGAAATTCGACGTGAAGAAGAAAACTAAGATACCGGCTGCGTCGGG GGTGCCGACGCTCTCAAAGGCGGATGAACCGCGGAACCCGGAGGAGAAGG AAGAAATGAGAAAGTTCCCGTACCGAGAGGCAGTGGGGGTGCTCATGTGG ACGGCGACGATGACACGGTCGGATATTGCGTGCGCCGTACGCGCCGTGGC CAGGTTCTGCGAAAACCCTGGGCCGGCACACAAGAACGCAGTGATGAAGA TCTTCCAGTATTTCCTTCACACAAAAGAATGGAGGATTATGTACGGTGGA CAGGGGTGTGGACTTTGCATGGAAGCTTATACGGATTCGAATTTTGGAGC CTGCCTGAACACAAGACGGTCGGTTTCAGGTGCGGTGTCGATGTTGGCGA AAGGAGCAATCAGTTGGCACTCGAGGATGCAAGAAGTAACAGCATCAGGT ACCTCGGAGGCAGAGTACGTTGCCTTATCGGAGGTAGTCGAGGATGTACT ACTTTTGAGACAGGTTCAGGAGTTCATGGAACCATCGATGAGGGTCGGTG CAATAAATATGTTCGAAGATGATGAAGGGGCCATCAAGCTGGCCACAAAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig67:338561..339460-

>mRNA_F-serratus_M_contig67.17718.1 ID=mRNA_F-serratus_M_contig67.17718.1|Name=mRNA_F-serratus_M_contig67.17718.1|organism=Fucus serratus male|type=CDS|length=1752bp|location=Sequence derived from alignment at F-serratus_M_contig67:338561..339460- (Fucus serratus male)
ATGACGGCGATTGGGTTCGAGCAGGCAAAGGCGGACCCGTTCGTGTCCCG
CAAGGTCGTTGACGGTGGGGCGGAGATGGTGGCGGTCGTACACGTAGACG
GCATCCTTGCCCACGCCAAAGACCAAGCGACGATGGATAGATTCGCGGCC
GAGCTTGGGCAGAATTTCAGATTGAAGGACACGAGGGACGCTGAGTACTA
CATGGGTTGTCACATCACCAGGAACCGCAAGGCGCGCGAGTTGAAGTTCG
TCCAACGCCTGTACGTGGAGTCACTGGTAATGAAATTCGACGTGAAGAAG
AAAACTAAGATACCGGCTGCGTCGGGGGTGCCGACGCTCTCAAAGGCGGA
TGAACCGCGGAACCCGGAGGAGAAGGAAGAAATGAGAAAGTTCCCGTACC
GAGAGGCAGTGGGGGTGCTCATGTGGACGGCGACGATGACACGGTCGGAT
ATTGCGTGCGCCGTACGCGCCGTGGCCAGGTTCTGCGAAAACCCTGGGCC
GGCACACAAGAACGCAGTGATGAAGATCTTCCAGTATTTCCTTCACACAA
AAGAATGGAGGATTATGTACGGTGGACAGGGGTGTGGACTTTGCATGGAA
GCTTATACGGATTCGAATTTTGGAGCCTGCCTGAACACAAGACGGTCGGT
TTCAGGTGCGGTGTCGATGTTGGCGAAAGGAGCAATCAGTTGGCACTCGA
GGATGCAAGAAGTAACAGCATCAGGTACCTCGGAGGCAGAGTACGTTGCC
TTATCGGAGGTAGTCGAGGATGTACTACTTTTGAGACAGGTTCAGGAGTT
CATGGAACCATCGATGAGGGTCGGTGCAATAAATATGTTCGAAGATGATG
AAGGGGCCATCAAGCTGGCCACAAACATGACGGCGATTGGGTTCGAGCAG
GCAAAGGCGGACCCGTTCGTGTCCCGCAAGGTCGTTGACGGTGGGGCGGA
GATGGTGGCGGTCGTACACGTAGACGGCATCCTTGCCCACGCCAAAGACC
AAGCGACGATGGATAGATTCGCGGCCGAGCTTGGGCAGAATTTCAGATTG
AAGGACACGAGGGACGCTGAGTACTACATGGGTTGTCACATCACCAGGAA
CCGCAAGGCGCGCGAGTTGAAGTTCGTCCAACGCCTGTACGTGGAGTCAC
TGGTAATGAAATTCGACGTGAAGAAGAAAACTAAGATACCGGCTGCGTCG
GGGGTGCCGACGCTCTCAAAGGCGGATGAACCGCGGAACCCGGAGGAGAA
GGAAGAAATGAGAAAGTTCCCGTACCGAGAGGCAGTGGGGGTGCTCATGT
GGACGGCGACGATGACACGGTCGGATATTGCGTGCGCCGTACGCGCCGTG
GCCAGGTTCTGCGAAAACCCTGGGCCGGCACACAAGAACGCAGTGATGAA
GATCTTCCAGTATTTCCTTCACACAAAAGAATGGAGGATTATGTACGGTG
GACAGGGGTGTGGACTTTGCATGGAAGCTTATACGGATTCGAATTTTGGA
GCCTGCCTGAACACAAGACGGTCGGTTTCAGGTGCGGTGTCGATGTTGGC
GAAAGGAGCAATCAGTTGGCACTCGAGGATGCAAGAAGTAACAGCATCAG
GTACCTCGGAGGCAGAGTACGTTGCCTTATCGGAGGTAGTCGAGGATGTA
CTACTTTTGAGACAGGTTCAGGAGTTCATGGAACCATCGATGAGGGTCGG
TGCAATAAATATGTTCGAAGATGATGAAGGGGCCATCAAGCTGGCCACAA
AC
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