mRNA_F-serratus_M_contig659.17554.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig659.17554.1
Unique NamemRNA_F-serratus_M_contig659.17554.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig659.17554.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig659contigF-serratus_M_contig659:181277..183090 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons4
Model size909
Cds size909
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig659.17554.1prot_F-serratus_M_contig659.17554.1Fucus serratus malepolypeptideF-serratus_M_contig659 181277..183090 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932020.0177577-CDS-F-serratus_M_contig659:181276..1814171622932020.0177577-CDS-F-serratus_M_contig659:181276..181417Fucus serratus maleCDSF-serratus_M_contig659 181277..181417 -
1690964105.6067703-CDS-F-serratus_M_contig659:181276..1814171690964105.6067703-CDS-F-serratus_M_contig659:181276..181417Fucus serratus maleCDSF-serratus_M_contig659 181277..181417 -
1622932020.0399756-CDS-F-serratus_M_contig659:181749..1818731622932020.0399756-CDS-F-serratus_M_contig659:181749..181873Fucus serratus maleCDSF-serratus_M_contig659 181750..181873 -
1690964105.617907-CDS-F-serratus_M_contig659:181749..1818731690964105.617907-CDS-F-serratus_M_contig659:181749..181873Fucus serratus maleCDSF-serratus_M_contig659 181750..181873 -
1622932020.0567803-CDS-F-serratus_M_contig659:182071..1825531622932020.0567803-CDS-F-serratus_M_contig659:182071..182553Fucus serratus maleCDSF-serratus_M_contig659 182072..182553 -
1690964105.6278942-CDS-F-serratus_M_contig659:182071..1825531690964105.6278942-CDS-F-serratus_M_contig659:182071..182553Fucus serratus maleCDSF-serratus_M_contig659 182072..182553 -
1622932020.0736759-CDS-F-serratus_M_contig659:182928..1830901622932020.0736759-CDS-F-serratus_M_contig659:182928..183090Fucus serratus maleCDSF-serratus_M_contig659 182929..183090 -
1690964105.6378703-CDS-F-serratus_M_contig659:182928..1830901690964105.6378703-CDS-F-serratus_M_contig659:182928..183090Fucus serratus maleCDSF-serratus_M_contig659 182929..183090 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig659.17554.1

>prot_F-serratus_M_contig659.17554.1 ID=prot_F-serratus_M_contig659.17554.1|Name=mRNA_F-serratus_M_contig659.17554.1|organism=Fucus serratus male|type=polypeptide|length=303bp
WCCWLVVLLLPTILMSSPVDQRVGDVGTTPPSCATQSAPAEATATAGINT
PLPGSPAALNRVSGGVLSGTSANTLTRKATAKRKYDTIRVAAEKAPARPL
NVHSIESIVDGTCFPVRKSSAPGSARTCCGRGCNVTFASHHDSIGRVRRA
VPPAGNGQQSARKIWVRECIQDDKSLALSDHAGFSCVVCQLFFVAVTGCS
KKLIRSAMDNGGSGMRPRHKVNASSQVIVAFILELASRWEFQPDSQNIHM
DFPSKVDVHQIFLASDACQSLAGAVSYSYFVLMWNKHCPHVRLKKAMPSG
PP*
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mRNA from alignment at F-serratus_M_contig659:181277..183090-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig659.17554.1 ID=mRNA_F-serratus_M_contig659.17554.1|Name=mRNA_F-serratus_M_contig659.17554.1|organism=Fucus serratus male|type=mRNA|length=1814bp|location=Sequence derived from alignment at F-serratus_M_contig659:181277..183090- (Fucus serratus male)
TGGTGCTGCTGGCTGGTGGTGTTGCTGCTGCCAACAATACTAATGTCGAG
TCCAGTTGACCAACGCGTGGGAGACGTAGGAACTACCCCCCCATCGTGCG
CAACGCAATCGGCCCCGGCCGAGGCCACGGCAACTGCCGGCATCAACACC
CCCCTTCCAGGAGTAAGTTATGTTTGTTTTAAACGAGGGAGAGGTAGACC
ACGTATGATAGATGTGTTGGGGAGTGGCTTTACCGTATGTCTCTGCCCAT
TGTTAACTGTTGTGGATAATGGGTATCGTCTCTGACTGCAGCACCCGCAC
CGATCTGTTTATCCCGACTTCGATGGGTGGTGCTAATACGTGGAAATAAT
ATCGGTCATGATAGAAATCACGATCGCGGCAGAAGAGTTCAACATCAATC
ATGCCGACGTTGGCACAGGCTATTTCCCTCGTGTTTTTTCGATCTGATGC
GGGGAGTAGATGATTGTTACCGCACTAATTATTCACTGCGGTGATTACTC
ATCGGAGTTTTTCTTCCCCTTGTCGCCCTGCCGTCAGTCGCCTGCCGCCT
TAAATCGTGTTTCAGGTGGTGTCCTGAGTGGTACATCCGCCAACACCTTG
ACGCGCAAGGCAACAGCCAAGCGCAAGTATGACACGATCAGAGTGGCCGC
AGAAAAGGCGCCCGCACGCCCTCTCAATGTCCACAGTATCGAGTCCATTG
TAGACGGTACCTGCTTTCCTGTTCGGAAGAGCAGTGCGCCTGGCTCGGCC
CGCACCTGTTGCGGTAGGGGGTGTAACGTGACCTTTGCATCCCACCACGA
CTCTATAGGGCGGGTGCGGAGAGCGGTACCACCTGCAGGGAATGGGCAGC
AGAGCGCACGCAAGATCTGGGTTAGAGAATGCATCCAGGATGACAAGAGT
CTTGCGCTCAGTGACCACGCCGGCTTCAGCTGTGTTGTGTGCCAACTGTT
TTTTGTTGCGGTGACGGGTTGCTCTAAAAAGCTCATCAGGAGTGCGATGG
ACAACGGGGGCTCTGGGATGTGAGTAACAAAAGCACATGTTCGTTCACCT
GCATGTCTGTACGAACAGTAGTACCGTGGTGCAATAGAGGGACAACCGGT
AACGTGTTGTGCTGCCTTCCCCCGCCAGCAGCCCGCACTCCGCACACGCA
CGCCAAAACCAACGCTACTCCGTCCCCCGGCGCACGTTGCTCACCCGCGC
GCGCGAAACGATTGCAGGAGACCTCGGCACAAAGTGAACGCGAGTTCCCA
GGTTATCGTGGCTTTTATCTTGGAGCTAGCAAGTCGGTGGGAGTTCCAGC
CGGACAGCCAAAACATCCACATGGATTTCCCGAGCAAAGTTGTGAGTTTT
GGTGCTCTAGTTGAGAAGCGACTGGCGTTGGTAATAACGTACTCTTTTTT
TTTTTTGAAGAAAATACAGAACGCACCTAGACCTTCTGAGCATCCCCCAG
TCAGGGGGGGAAAATGTCAAAACGTTCAGGTCGGCTCAAAGGCTGCAAAT
ACAAAACCTCTTCATGGCATTTAAGCAAACCTAAAACAAACTTCTCGTCC
TTCACACTCTTGACACACTACGGCAAGTGTGGTTCGCGGCTTCGCTTCCT
CGCGTCTCACAAAGTTCCTTTTGCTCGCTTGCCCATGATCCCGCTGTGTG
TGTGTTGTCGATCGCCGCGGCAGGACGTCCACCAGATCTTCCTCGCGAGC
GATGCGTGCCAGTCTCTGGCGGGAGCCGTATCTTACTCGTACTTCGTTCT
GATGTGGAACAAGCATTGCCCTCATGTCCGCTTGAAGAAAGCAATGCCCT
CAGGTCCCCCCTAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig659:181277..183090-

>mRNA_F-serratus_M_contig659.17554.1 ID=mRNA_F-serratus_M_contig659.17554.1|Name=mRNA_F-serratus_M_contig659.17554.1|organism=Fucus serratus male|type=CDS|length=1818bp|location=Sequence derived from alignment at F-serratus_M_contig659:181277..183090- (Fucus serratus male)
TGGTGCTGCTGGCTGGTGGTGTTGCTGCTGCCAACAATACTAATGTCGAG
TCCAGTTGACCAACGCGTGGGAGACGTAGGAACTACCCCCCCATCGTGCG
CAACGCAATCGGCCCCGGCCGAGGCCACGGCAACTGCCGGCATCAACACC
CCCCTTCCAGGATGGTGCTGCTGGCTGGTGGTGTTGCTGCTGCCAACAAT
ACTAATGTCGAGTCCAGTTGACCAACGCGTGGGAGACGTAGGAACTACCC
CCCCATCGTGCGCAACGCAATCGGCCCCGGCCGAGGCCACGGCAACTGCC
GGCATCAACACCCCCCTTCCAGGATCGCCTGCCGCCTTAAATCGTGTTTC
AGGTGGTGTCCTGAGTGGTACATCCGCCAACACCTTGACGCGCAAGGCAA
CAGCCAAGCGCAAGTATGACACGATCAGAGTGGCCGCAGAAAAGGCGCCC
GCACGCCCTCTCAATGTCCACAGTATCGAGTCCATTGTAGACGGTACCTG
CTTTCCTGTTCGGAAGAGCAGTGCGCCTGGCTCGGCCCGCACCTGTTGCG
GTAGGGGGTGTAACGTGACCTTTGCATCCCACCACGACTCTATAGGGCGG
GTGCGGAGAGCGGTACCACCTGCAGGGAATGGGCAGCAGAGCGCACGCAA
GATCTGGGTTAGAGAATGCATCCAGGATGACAAGAGTCTTGCGCTCAGTG
ACCACGCCGGCTTCAGCTGTGTTGTGTGCCAACTGTTTTTTGTTGCGGTG
ACGGGTTGCTCTAAAAAGCTCATCAGGAGTGCGATGGACAACGGGGGCTC
TGGGATTCGCCTGCCGCCTTAAATCGTGTTTCAGGTGGTGTCCTGAGTGG
TACATCCGCCAACACCTTGACGCGCAAGGCAACAGCCAAGCGCAAGTATG
ACACGATCAGAGTGGCCGCAGAAAAGGCGCCCGCACGCCCTCTCAATGTC
CACAGTATCGAGTCCATTGTAGACGGTACCTGCTTTCCTGTTCGGAAGAG
CAGTGCGCCTGGCTCGGCCCGCACCTGTTGCGGTAGGGGGTGTAACGTGA
CCTTTGCATCCCACCACGACTCTATAGGGCGGGTGCGGAGAGCGGTACCA
CCTGCAGGGAATGGGCAGCAGAGCGCACGCAAGATCTGGGTTAGAGAATG
CATCCAGGATGACAAGAGTCTTGCGCTCAGTGACCACGCCGGCTTCAGCT
GTGTTGTGTGCCAACTGTTTTTTGTTGCGGTGACGGGTTGCTCTAAAAAG
CTCATCAGGAGTGCGATGGACAACGGGGGCTCTGGGATGAGACCTCGGCA
CAAAGTGAACGCGAGTTCCCAGGTTATCGTGGCTTTTATCTTGGAGCTAG
CAAGTCGGTGGGAGTTCCAGCCGGACAGCCAAAACATCCACATGGATTTC
CCGAGCAAAGTTGAGACCTCGGCACAAAGTGAACGCGAGTTCCCAGGTTA
TCGTGGCTTTTATCTTGGAGCTAGCAAGTCGGTGGGAGTTCCAGCCGGAC
AGCCAAAACATCCACATGGATTTCCCGAGCAAAGTTGACGTCCACCAGAT
CTTCCTCGCGAGCGATGCGTGCCAGTCTCTGGCGGGAGCCGTATCTTACT
CGTACTTCGTTCTGATGTGGAACAAGCATTGCCCTCATGTCCGCTTGAAG
AAAGCAATGCCCTCAGGTCCCCCCTAAGACGTCCACCAGATCTTCCTCGC
GAGCGATGCGTGCCAGTCTCTGGCGGGAGCCGTATCTTACTCGTACTTCG
TTCTGATGTGGAACAAGCATTGCCCTCATGTCCGCTTGAAGAAAGCAATG
CCCTCAGGTCCCCCCTAA
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