mRNA_F-serratus_M_contig656.17525.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig656.17525.1 vs. uniprot
Match: A0A6H5JR94_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR94_9PHAE) HSP 1 Score: 320 bits (820), Expect = 3.620e-99 Identity = 215/472 (45.55%), Postives = 260/472 (55.08%), Query Frame = 2
Query: 62 MGSCSSKEETGTTVSPERKRHRRPWRPMQQMTPSPADTRLMLALQDLKRQMDEEQPAQEAFSFTKIILRLGTVERVLKRVKVVFRSVDHGNKGHVTREELMEGLRKAKVDLGEEWKDTNIDECLEHLGEGGGDHDRVGLREFVVMLAVARVCRPKKRRSSIFVPLNNGAISGIGDEDLPQRKERPPVMSTIDENEARRG---IIGSADLKAIPYEIS------------------------QPLAEAGGRKEGAEGADISSFGTPAAADEDEKKEECMVEQSNA---------------------SESAEESDPSEQLRASAGPGGLPRGSSWRNLKWARIPPLRSLDISGRPIRRLSRSRSSSGLAKGGEGVG---------SEGDVSASVKYVLDLFIAAYFQFDTKAQGYITKRTIEKKLRQAERENGSSSLLDQKRWSELAWEDDRLSFQEFIFAFAQWLGLPEDGYD 1306
MG SKEET T +P R+ WR TP+ A RL+ LQDLKRQMDEE +E+FSFTKIIL+LGT+E++L R+ VF+SVDHGNKGHVT++EL EGLR+A VDLG+EW+DTNID+CL+HL G D+VGLREFVVMLAV RVCRP KRRSS+FVPL G E + + TI ENE R+ + +A +E+ TPA D E + + ASAGP GLPRGSSWR +KWA+IP L S+D S +R LSR S SG + G +E DVS SVKYVLDLFIAAYFQFD + +G+ITK TIEK LR++E E G S LLD+KRWSE AW+ DRLSFQEFI+AF+ WLGL ED D
Sbjct: 1 MGCHGSKEETPTCQAP-----RKMWRSFPPPTPTSAQRRLIEGLQDLKRQMDEESGGKESFSFTKIILKLGTIEKILHRINAVFQSVDHGNKGHVTKDELKEGLRRAHVDLGDEWEDTNIDDCLQHLH---GRDDKVGLREFVVMLAVGRVCRPLKRRSSVFVPLEEEQEGGDAMEGRLRMDDI--AKKTIKENEVRKTDFTLQQAAXXXXXXFEVEGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPAGQVADPVPLEMAAXXXXXXXXXXXXXXXXXXXXXXXXXXKHGGDANGRQGGAYASAGPDGLPRGSSWRKIKWAQIPSLMSIDTS---VRGLSRGLSRSGRSNAAAGXXXXXXXXXXXNEVDVSMSVKYVLDLFIAAYFQFDKEGRGFITKSTIEKTLRKSENEPGVSGLLDKKRWSEAAWDGDRLSFQEFIYAFSLWLGLLEDDVD 459
BLAST of mRNA_F-serratus_M_contig656.17525.1 vs. uniprot
Match: D8LMR6_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMR6_ECTSI) HSP 1 Score: 270 bits (689), Expect = 1.690e-82 Identity = 178/392 (45.41%), Postives = 215/392 (54.85%), Query Frame = 2
Query: 62 MGSCSSKEETGTTVSPERKRHRRPWRPMQQMTPSPADTRLMLALQDLKRQMDEEQPAQEAFSFTKIILRLGTVERVLKRVKVVFRSVDHGNKGHVTREELMEGLRKAKVDLGEEWKDTNIDECLEHLGEGGGDHDRVGLREFVVMLAVARVCRPKKRRSSIFVPLNNGAISGIGDEDLPQRKERPPVMSTIDENEARRGIIGSADLKAIPYEISQPLAEAGGRKEGAEGADISSFGTPAAADEDEKKEECMVEQSNASESAEESDPSEQLRASAGPGGLPRGSSWRNLKWARIPPLRSLDISGRPIRR-LSRS-RSSSGLAKGGEGVGSEGDVSASVKYVLDLFIAAYFQFDTKAQGYITKRTIEKKLRQAERENGSSSLLDQKRWSELAWE 1231
MG SKEET T +P R+ WR TPS A RL+ LQDLKRQM EE +E+FSFTKIIL+LGT+E++L+R+ VF+SVDHGNKGHVT++EL EGL +A VDLG+EW+DTNID+CL+HL G D+VGLREFVVMLAV RVCRP KRRSS+FVPL G E + + V TI+E+E RR WA+IP L S+D S R + R LSRS RS+S G G+E DVS SVKYVLDLFIAAYFQFD + +G+ITK TIEK LR++E E G S LLD+KRWSE AW+
Sbjct: 1 MGCHGSKEETPTCQAP-----RKMWRSFPPSTPSSAQRRLIEGLQDLKRQMAEESGEKESFSFTKIILKLGTIEKILQRINAVFKSVDHGNKGHVTKDELKEGLHRAHVDLGDEWEDTNIDDCLQHLQ---GRDDKVGLREFVVMLAVGRVCRPLKRRSSVFVPLQEEQEGGGATEGGLRMDDI--VKKTIEEDEVRR-------------------------------------------------------------------------------------------WAQIPSLMSIDTSVRGLSRGLSRSGRSNSATGGRGGAGGNEVDVSMSVKYVLDLFIAAYFQFDKEGRGFITKSTIEKTLRKSENEPGVSGLLDKKRWSEAAWD 291
BLAST of mRNA_F-serratus_M_contig656.17525.1 vs. uniprot
Match: A0A835YSL5_9STRA (EF-hand domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSL5_9STRA) HSP 1 Score: 84.0 bits (206), Expect = 1.360e-13 Identity = 113/434 (26.04%), Postives = 171/434 (39.40%), Query Frame = 2
Query: 188 ALQDLKRQMDE-EQPAQEAFSFTKIILRLGTVERVLKRVKVVFRSVDHGNKGHVTREELMEGLRKAKVDLGEEWKDTNIDECLEHLGEGGGDHDRVGLREFVVMLAVARVCR--PKKRRSSIFVP--LNNGAISGIGDEDLPQRKERPPVMSTIDENEARRGIIGSADLKAIPYEISQPLAEAGGRKEGAEGADISSFGTPAAADEDEKKEECMVEQSNASESAEESDPSEQLRASAG----PGGLPRGSSWRN--------------------LKWARIPPLRSLDISGRPIRRLSRSRSSSGLAKGGEGVGSEGDVSASV---KYVLDLFIAAYFQ--------------FDTKAQGYITKRTIEKKLRQAERENGSS-----SLLDQKRWSELAWEDDRLSFQEFIFAFAQWLGLPEDGYDDDEEVVALTE 1336
AL+D K ++D + AFSF KI+L+LGT++RVL+RV+ V+ S D G V+ ++ + ++ L D C G + ++ R+F VMLAVARV R P SS + A S + + PP+ D A L A+ + ++ + SSF Q++ + G GL G W+ WARIP L L P+ L+ GG S+ D +V +YVLDL IAAYFQ FD+K +G+I++R +E++L AE GS + L +++W L D +LSFQ+F++ F+ W+ D E+ VA E
Sbjct: 42 ALRDRKWELDHADADLASAFSFAKIVLKLGTIKRVLRRVQSVYTSCDADCDGKVSCDDFKRACQDMRLGLEAGAVDKVFAIC------GVENSAQLSFRDFTVMLAVARVMRVIPGAPISSYAAASSIRASAESEGSALQVEVGAKSPPMTREADRTRA-------VTLPALQSDSQSRMSR-----------NSSSFS--------------------------------QVKGALGLLCYRLGLLFGGKWQTEPTLSXXXXXXXXXXXXXXXXXWARIPSLNGLVGLSGPVTPLT----------GGAPAESKRDRRGNVQELRYVLDLIIAAYFQXXXXXXXXXXXXXXFDSKVEGFISRRRLEQQLEGAEGLQGSEPSTHGTFLYEEQWQSLWGPDGKLSFQDFVYIFSSWIDF------DSEDPVADAE 403
BLAST of mRNA_F-serratus_M_contig656.17525.1 vs. uniprot
Match: A0A836CAN3_9STRA (EF-hand domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAN3_9STRA) HSP 1 Score: 80.5 bits (197), Expect = 1.380e-12 Identity = 106/396 (26.77%), Postives = 167/396 (42.17%), Query Frame = 2
Query: 170 DTRLMLALQDLKRQMDEEQPAQE------AFSFTKIILRLGTVERVLKRVKVVFRSVDHGNKGHVTREELMEGLRKAKVDLGEEWKDTNIDECLEHLGEGGGDHDRVGLREFVVMLAVARVCRPKKRRSSIFVPLNNGAISGIGDEDLPQRKERPPVMSTIDENEARRGIIGSADLKAIPYEISQPLAEAGGRKEGAEGADISSFGTPAAADEDEKKEECMVEQSNASESAEESDPSEQLRASAGPGGLPRGSSWRNLKWARIPPLRSLDISGRPIRRLSRSRSSSGLAKGGEGVGSEGDVSASVKYVLDLFIAAYFQFDTKAQGYITKRTIEKKLRQAERENG----SSSLLDQKRWSELAWEDDRLSFQEFIFAFAQWLGLPEDGYDDDEEVVA 1327
D +L+ AL+D R+ D + PA + AFSFTKI+L++GT++RVL V++ F + G V+R++L++ A+V + E D C +GG +GLR FVV+LAVARV +R N G + + + E T D +A P+ AG +EG + SSF K + + A +A +P LR + SSW + R +G + R L + + S+S + F++ FDTKA+G+I++ + ++L+ AE G S L RW L + RL+FQ F++ F WL L + DD+ V+
Sbjct: 32 DQQLLAALKD--RKWDLQHPAGQPADGAAAFSFTKILLKMGTIKRVLAHVELAFAELAQDEDGRVSRQQLLQACEDAQVPMDEAILDNVFAAC--EAADGGS----LGLRGFVVLLAVARVMAQSAQR-------NGGRLLSAATQHSSTKTECSEECCT--------------DARA-------PVGTAG--QEGRMTRNASSFT---------KVKWTRIPSLQALSAAYSEEPQRVLREDS------MNSSWHEV-------TRGWSDAGSHMLHQCRCELQYVLDLI---IAAYFQASSSRRE----FMSVNELFDTKAEGFISRTCLHRQLQGAEGVFGEYASSGGFLRDARWRGLRGREGRLTFQGFVYIFTSWLDLDQGESGDDDSQVS 360 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig656.17525.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig656.17525.1 >prot_F-serratus_M_contig656.17525.1 ID=prot_F-serratus_M_contig656.17525.1|Name=mRNA_F-serratus_M_contig656.17525.1|organism=Fucus serratus male|type=polypeptide|length=442bp MGSCSSKEETGTTVSPERKRHRRPWRPMQQMTPSPADTRLMLALQDLKRQback to top mRNA from alignment at F-serratus_M_contig656:98649..113873- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig656.17525.1 ID=mRNA_F-serratus_M_contig656.17525.1|Name=mRNA_F-serratus_M_contig656.17525.1|organism=Fucus serratus male|type=mRNA|length=15225bp|location=Sequence derived from alignment at F-serratus_M_contig656:98649..113873- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig656:98649..113873- >mRNA_F-serratus_M_contig656.17525.1 ID=mRNA_F-serratus_M_contig656.17525.1|Name=mRNA_F-serratus_M_contig656.17525.1|organism=Fucus serratus male|type=CDS|length=2652bp|location=Sequence derived from alignment at F-serratus_M_contig656:98649..113873- (Fucus serratus male)back to top |