mRNA_F-serratus_M_contig652.17508.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig652.17508.1
Unique NamemRNA_F-serratus_M_contig652.17508.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig652.17508.1 vs. uniprot
Match: A0A6H5KMF5_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMF5_9PHAE)

HSP 1 Score: 285 bits (730), Expect = 1.570e-81
Identity = 181/495 (36.57%), Postives = 244/495 (49.29%), Query Frame = 2
Query: 1778 WSLHPNYNFPNIRNCMPRDFWYLLYSRFLHFA---------PAGGNTG--DKLHHIRKLEEILNSAWSSAGDIGAWLSFDEQMFKDTSVAGRSLQRYNPMKPIKRGIKSWGVACSTGYCFASRIDGGWKGNPPMAPMEDCPLGKIPNLVMQCMLHSCPELTEKIDGLGVYVAMDNFFTSPTLLLCLETHKIYGVGTVRTNRMGLKGAAEVFREEGGKLLKKGDMNFARSGTLAVVEWKDTKVVTLLSTIH--NTAKD------FEPQLFEKRQAGGKGPCVGV-QPQARKSYNIKMSGCDINDQLNGARMIDHMSKTFFWRRVFEGKFFTALTNACLLKKMWAVELTEGIDKEFELVGPLAEDEVKDGPMTGTSRCTLLKLKKRVRQVERMEKAKWDMDLCDYLMAKCKRGHADKGLHQHLRTPEQVLPPPRPASAKWEKPIPSAGRTCDNPECGSRTKGACRCTDCGS-----GVVMCMKCFLSDTAHTAARTA 3187
            WS   + N+P +R  M RD + LLYSRFLH +         P G +    D   HIR LE+ILN AWS   D+G WL +DEQM K  S   + L  +NP KPI  G+K + V    GYC  + IDG +KG+P +  +EDCPLGK    V+  +L  C  L  K+ G GV++AMDN+FTSPTL  CL +H+I+ VGT R+ R    GA    +         GDM F RSG +A V+W+D+K + L ST+H   T ++      F+P     +  G  G      QP  R  Y   M G D  DQ N +   DH S T  WRRVF+ K    LTN  LL +MW   L   +D   +      E EV++          L  +KK + ++ + E+  WD +L + LM +C  G   KG      +  Q     +P    W      + R C +P C  RT   C C +  +     GV+MC  CFL    + AA  A
Sbjct:   30 WSESAHDNYPLVREFMQRDLFELLYSRFLHCSDPNAPPRQLPTGEDNPEYDSKWHIRDLEKILNCAWSENVDLGQWLCYDEQMVKTASTFSKGLAHFNPAKPITHGMKLYAVCDRNGYCLINSIDGSFKGDPSLRSLEDCPLGKTTRHVLHVLLEECETLRGKLVGSGVFIAMDNYFTSPTLFACLASHEIFAVGTCRSPRTC--GALPYIQSLERTTPNPGDMTFCRSGEMAFVQWRDSKEILLCSTVHIGETGEEGGDINHFKPVPLALKGKGWAGKHKEHDQPVMRMDYVKYMGGVDRADQQNESHYHDHRSYTNHWRRVFDAKIMQMLTNNFLLFRMWVRLLMSEVDVLMDAHNTPFE-EVQE----------LADVKKELERLSKRERVDWDEELSEILMRRCNVGTIRKGGKVPRSSERQ-----QPRGKVWGSVEIKSHRVCMDPACSKRTLKGCTCEEFCTFEGQRGVLMCKTCFLDKDRYAAAAEA 506          
BLAST of mRNA_F-serratus_M_contig652.17508.1 vs. uniprot
Match: A0A6H5JW40_9PHAE (HTH La-type RNA-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW40_9PHAE)

HSP 1 Score: 298 bits (762), Expect = 1.690e-80
Identity = 190/519 (36.61%), Postives = 266/519 (51.25%), Query Frame = 2
Query: 1370 WYPHGLPN--NDEEYEKRMARDG-ETAKLSASSRAALPRLRVEDIPRIVQDTG--PLAFEML---QLTFPPEALELVRDMTNKYFEFCQSREPDTGREKR--HEA-KGPTSGFAKFPEGGITDDDVYGMLGIVVHMGLVRTCRFANAWSLHPNYNFPNIRNCMPRDFWYLLYSRFLHF----APAGGNTGDKLH--------HIRKLEEILNSAWSSAGDIGAWLSFDEQMFKDTSVAGRSLQRYNPMKPIKRGIKSWGVACSTGYCFASRIDGGWKGNPPMAPMEDCPLGKIPNLVMQCMLHSCPELTEKIDGLGVYVAMDNFFTSPTLLLCLETHKIYGVGTVRTNRMGLKGAAEVFREEGGKLLKKGDMNFARSGTLAVVEWKDTKVVTLLSTIHNT---AKDFEPQ------------------------------LFEKRQAGGKGPCVGVQ-PQARKSYNIKMSGCDINDQLNGARMIDHMSKTFFWRRVFEGKFFTALTNACLL-KKMWAVE 2752
            W   G+P+    ++++KR  R+    A LSAS+R  LP L  +     + ++G  PL   M+    + FP EA++L  D TNKY   C +      ++ R  H+  K  T G    PE       +YGMLGI + MGL +  R    WS   + ++P +R CM RD + LLY RF+H     AP      DK          HIR+LE+ILN+AW+   D   WL +DEQM K  S     L R++P KPI  G+K + +    GYCF S +DGG  G+P +    DCPLG+    V+  +L +C +  +KIDG G Y+AMDN+F SPTL  CL +H I+ VGT R+NR G  GA    +    + +++G+M+FAR+G +A V+W D+K + L S+IH     A   EP+                              +F  R+AG  G  + +Q P  RK Y   M G D  DQ NG+   DH S T  WRRV EGKF    TN  ++ KK+  +E
Sbjct:  578 WTDRGIPDFAGTDDHKKRTQRETVSAASLSASAREKLPSL--DTFMDSLDESGKFPLHGSMMTCFDMMFPDEAIDLFVDKTNKYVNLCTTPSLPGAKDTRKAHQVEKTRTLGMVTLPEPAFERKHIYGMLGITITMGLTKKTRMRKHWSRSLHDDYPLVRECMSRDLFELLYCRFIHCSDGNAPPRWAGEDKTPNPEFDSKWHIRELEDILNNAWTENMDFNQWLCYDEQMVKTVSTFAHYLMRHSPKKPITHGMKLFAICDIEGYCFVSSVDGGMNGDPKLRVWFDCPLGRTTRHVLHVLLGACKKFGDKIDGSGAYIAMDNYFKSPTLFECLASHDIFAVGTCRSNRTG--GAVPYLQSLDRRPVERGEMHFARAGNVAFVQWLDSKEIILCSSIHIAQPHAAIGEPKKEDSDGGDDHFAPLPYRCFVCPLPSRPHPFMFSLRKAGQAGKSLELQQPWMRKDYVANMGGVDTADQQNGSHTHDHKSYTNHWRRVMEGKFEQTFTNIFVMFKKLGKME 1092          
BLAST of mRNA_F-serratus_M_contig652.17508.1 vs. uniprot
Match: A0A6H5K5P5_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5P5_9PHAE)

HSP 1 Score: 267 bits (683), Expect = 1.010e-74
Identity = 139/351 (39.60%), Postives = 197/351 (56.13%), Query Frame = 2
Query: 1523 LAFEMLQLTFPPEALELVRDMTNKYFEFC-QSREPDTGREKRHEAKGPTSGFAKFPEGGITDDD---------VYGMLGIVVHMGLVRTCRFANAWSLHPNYNFPNIRNCMPRDFWYLLYSRFLHFAP---AGGNTG---DKLHHIRKLEEILNSAWSSAGDIGAWLSFDEQMFKDTSVAGRSLQRYNPMKPIKRGIKSWGVACSTGYCFASRIDGGWKGNPPMAPMEDCPLGKIPNLVMQCMLHSCPELTEKIDGLGVYVAMDNFFTSPTLLLCLETHKIYGVGTVRTNRMGLKGAAEVFREEGGKLLKKGDMNFARSGTLAVVEWKDTKVVTLLSTIHNTAKDFEPQLF 2527
            L F+  +  FPP   +++   TNKY  FC +   P   ++ RH  K   +G    P     D           +YG++GI++  G+ +  R  + W +  + N+P +R CMPRD + L Y RF H AP   A   T    D  HHIR  E+ LN+ WSS  ++G W+S+DEQM K T+ A   L R+NP KPIK GIK +   C TGYC+   IDGG+ G+  + P + CPLG+    V+  +L +C   + KI+  GV VAMDN+FTS  LLL L +  I+ VGT+R  R GL GA E+++       +KGDM FARS  + ++EW D+K V L+ST H   +D+ P L+
Sbjct:  198 LPFKFFEEAFPPACQDMILTETNKYVNFCAEETNPSPLQQPRHRKKKTRTGLPYVPSEDRPDGSKVYGFHRKHLYGVMGILISAGITQKRRLTDHWGVGDHDNYPLVRKCMPRDLFTLFYCRFFHMAPVIEALSTTHPEHDAKHHIRAFEDALNTCWSSLVELGGWVSYDEQMVKGTARAMHGLMRFNPQKPIKHGIKRFACWCWTGYCYLQSIDGGFYGDMGLRPHDKCPLGRTARTVLHVLLEACEVFSNKINNSGVTVAMDNYFTSAGLLLSLASRDIFAVGTLRGKRSGLDGAMELWQNNEESTKEKGDMIFARSNDIVIIEWVDSKTVHLMSTKHVFEEDWNPLLY 548          
BLAST of mRNA_F-serratus_M_contig652.17508.1 vs. uniprot
Match: A0A6H5KVX6_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVX6_9PHAE)

HSP 1 Score: 240 bits (612), Expect = 7.740e-67
Identity = 149/375 (39.73%), Postives = 203/375 (54.13%), Query Frame = 2
Query: 1415 RMARD-GETAKLSASSRAALPRL---RVEDIPRIVQDTGPLAFEM-LQLTFPPEALELVRDMTNKYFEFCQSREPDTGREKR--HEAK-GPTSGFAKFPE--------GGITDDDVYGMLGIVVHMGLVRTCRFANAWSLHPNYNFPNIRNCMPRDFWYLLYSRFLHFA---------PAGGNTGDKLHHIRKLEEILNSAWSSAGDIGAWLSFDEQMFKDTSVAGRSLQRYNPMKPIKRGIKSWGVACSTGYCFASRIDGGWKGNPPMAPMEDCPLGKIPNLVMQCMLHSCPELTEKIDGLGVYVAMDNFFTSPTLLLCLETHKIYGVGTVRTNRMGLKGAAEVFREEGGKLL-KKGDMNFARSGTLAVVEWKD 2461
            +M++D G    LSA +RAALP L        P   + +  LA E  L LTFP +A +L  D TN Y + C +  P    +KR  H+ K   T G     E        G   +  + GM+GI + MGL +  R    WS   + N+P ++  MPRD + LLY RFLH +         PAG    D  +  ++LEE+LN+AW++  +   WLS+DEQM K  S     +  Y P KPIK G+K       TGYC  S +DGG KG+P + P  DCPL +    V+  +L  C  L +KIDG GV++AMDN+FTSPTLL CL +H I+ VGT R +   L   A+ + E  G+ +  +GDMNF RSG +A V+W D
Sbjct:   15 KMSKDIGRGVSLSAEARAALPSLDNFMSHQNPTSGEFSLDLALEKCLDLTFPQKARKLFLDKTNAYVKHCTTAPPPGEEDKRKPHQMKKSATLGRVTLGERSEERNTYGMFEEQHMDGMIGIFITMGLTKKVRMRKHWSRSAHDNYPLVQKSMPRDVFELLYCRFLHCSDPNAPKRLLPAGEENPD--YDSKELEEMLNTAWATNVECDNWLSYDEQMIKTVSKYSSKVSFYCPAKPIKHGMKLLAACDITGYCLTSSVDGGMKGDPKLRPYMDCPLDRTTRHVLHVLLGECGVLRQKIDGSGVFIAMDNYFTSPTLLECLASHDIFAVGTCRAD---LTAGADTYLESLGRTIPNRGDMNFCRSGQVACVQWAD 384          
BLAST of mRNA_F-serratus_M_contig652.17508.1 vs. uniprot
Match: A0A6H5KJJ0_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJJ0_9PHAE)

HSP 1 Score: 240 bits (613), Expect = 2.880e-65
Identity = 173/517 (33.46%), Postives = 251/517 (48.55%), Query Frame = 2
Query: 1703 DDDVYGMLGIVVHMGLVRTCRFANAWSLHPNYNFPNIRNCMP---RDFWYLLYSRFLHFAPAGGNTGDK------LHHIR---KLEEILNSAWSSAGDIGAWLSFDEQMFKDTSVAGRSLQRYNPMKPIKRGIKSWGVACSTGYCFASRIDGGWKGNPPMAPMEDCPLGKIPNLVMQCMLHSCPELTEKIDGLGVYVAMDNFFTSPTLLLCLETHKIYGVGTVRTNRMGLKGAAEVFREEGGKLL-KKGDMNFARSGTLAVVEWKDTKVVTLLSTIHNTAKDFEPQLFEKRQAGGKG---PCVGVQPQARKSYNIKMSGCDINDQLNGARMIDHMSKTFFWRRVFEGKFFTALTNACLLKKMWAVELTEGIDKEFELVGPLAED-EVKDGPMTGTSRCTLLKLKKRVRQVERMEKAKWDMDLCDYLMAKCKRGHADKGLHQHLRTPEQVLPPPRPASAKWEKPIPSAGRTCDNPECGSRTKGACRCTD-CG----SGVVMCMKCFLSDTAHTAARTA 3187
            +  + GM+GI + +GL +  R    WS   + N+P ++ CM    +  W+    R      A     D       L H+R   +LEEILN+AW++  +   WLS+DEQM K  S     +  Y P KPIK G+K       TGYC  S +DGG KG+P + P  DCPLG+    V+  +L  C  L +KIDG GV++AMDN+FTSPT+  CL ++ I+ VGT R +R      A+ + E  G+ +  +GDMN  RSG +A V+W D+K + L+STIH     F      K +AGG     P    + +A+K       G ++ +    +  +  +SK    R V++ +  T L   C + +   VEL   + +E E   P+A   E+++  +  T   TL K+          E+A WD  +   LMAKC     +KG     R P       +PA   W      +GR C NP C +R+   C C   C     SGV MC  C+ S  +H  A  A
Sbjct:   27 EQHIDGMIGIFITIGLTKKVRMQKNWSRSAHDNYPLVQKCMSVLLQLGWWGRDRRGSKGTGAPRKVEDSPPSTAPLFHVRAVWELEEILNTAWAANVECDNWLSYDEQMIKTVSKYSSKVSFYCPAKPIKHGMKLLAACDITGYCLTSSVDGGMKGDPKLRPYMDCPLGRATRHVLHVLLGECGVLRQKIDGSGVFIAMDNYFTSPTVFECLASYDIFAVGTCRADRTA---GADAYLESLGRTIPNRGDMNLCRSGQVACVQWADSKGIFLISTIH-----FAQPAKGKEEAGGIDHIKPLPLSEVEAKKPI---APGGELEELELASTELATLSKVE--RAVWDEQKATLLMEKCNVARPNTVEL---LIREVEAKKPIAPGGELEELELASTELATLSKV----------ERAVWDEQMATLLMAKCNVARPNKG----GRRPASDN---KPADPVWGSVTLKSGRLCLNPTCKTRSTKGCSCEQFCTRGDESGVFMCETCWKSPESHEQAAKA 510          
BLAST of mRNA_F-serratus_M_contig652.17508.1 vs. uniprot
Match: A0A6H5KCC7_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCC7_9PHAE)

HSP 1 Score: 217 bits (552), Expect = 8.470e-58
Identity = 128/353 (36.26%), Postives = 185/353 (52.41%), Query Frame = 2
Query: 1703 DDDVYGMLGIVVHMGLVRTCRFANAWSLHPNYNFPNIRNCMPRDFWYLLYSRFLHFA---------PAGGNTGD--KLHHIRKLEEILNSAWSSAGDIGAWLSFDEQMFKDTSVAGRSLQRYNPMKPIKRGIKSWGVACSTGYCFASRIDGGWKGNPPMAPMEDCPLGKIPNLVMQCMLHSCPELTEKIDGLGVYVAMDNFFTSPTLLLCLETHKIYGVGTVRTNRMGLKGAAEVFREEGGKLL-KKGDMNFARSGTLAVVEWKDTKVVTLLSTIHNTAKDFEPQLFEKRQAGGKGPCVGVQPQARKSYNIKMSGCDINDQLNGARMIDHMSKTFFWRRVFEGKFFTALTNAC 2725
            +  + GM+GI + MGL +  R    WS   + N+P ++ CM RD + LLY RFLH +         P G    D     HIR+LEEILN+AW++  + G WLS+DEQM K  S               ++G+K       TGYC  S +DGG KG+P + P  DCPLG+    V+  +L  C  L +KIDG GV++AMDN+FTSPTL  CL +H I+ VGT R +R      A+ + E  G+ +  +GDMNF RSG +A V+W D+  + L+STIH         +  K +AGG      +     K+  +   G ++ +    +  +  +SK    R V++ +  T L   C
Sbjct:   27 EQHIDGMIGIFITMGLTKKVRMRKHWSRSAHDNYPLVQKCMSRDVFELLYCRFLHCSDPNAPERLLPDGEENPDYDSKRHIRELEEILNTAWATNVECGNWLSYDEQMIKTVSK-------------YEQGMKLLAACDITGYCLTSSVDGGMKGDPKLRPYMDCPLGRTTRHVLHVLLGECGVLRQKIDGSGVFIAMDNYFTSPTLFECLASHDIFAVGTCRADRTA---GADAYLESLGRTIPNRGDMNFCRSGQVACVQWADSNDIFLISTIH-----VAQPVKGKEEAGGIDHFKPLPLSEVKAKKLIARGVELEELQLASTELATLSKVE--RAVWDEQMATLLMVKC 356          
BLAST of mRNA_F-serratus_M_contig652.17508.1 vs. uniprot
Match: A0A6H5LEE0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEE0_9PHAE)

HSP 1 Score: 224 bits (571), Expect = 1.930e-57
Identity = 164/471 (34.82%), Postives = 230/471 (48.83%), Query Frame = 2
Query: 1847 LYSRFLHFA-PAGGNTGDKLHH-IRKLEEI--LNSAWSSAGDIGAWLSFDEQMFKDTSVAGRSLQRYNPMKPIKRGIKSWGVACS-TGYCFASRIDGGWKGNPPMAPMEDCPLGKIPNLVMQCMLHSCPELTEKIDGLGVYVAMDNFFTSPTLLLCLETHKIYGVGTVRTNRMGLKGAAEVFREEGGKLL-KKGDMNFARSGTLAVVEWKDTKVVTLLSTIH--NTAKD---------FEPQLFEKRQAGGKGPCVGVQ-PQARKSYNIKMSGCDINDQLNGARMIDHMSKTFFWRRVFEGKFFTALTNACLLKKMWAVELTEGIDKEFELVGPLAED-EVKDGPMTGTSRCTLLKLKKRVRQVERMEKAKWDMDLCDYLMAKCKRGHADKGLHQHLRTPEQVLPPPRPASAKWEKPIPSAGRTCDNPECGSRTKGACRCTD-CG----SGVVMCMKCFLSDTAHTAARTA 3187
            ++   +H A PA G  G + +  ++    I  LN + ++AG  G              V GRS   Y     +K        AC  T YC  S +DGG KG+P + P  DCPLG+    V+  +L  C  L +KIDG GV++AMDN+FTSPTL  CL +H I+ VGT R +R      A+ + E  G+ +  +GDMNF RSG +A V+W D+K + L+STIH    AK          F+P     R  G  G  + +Q P  R  Y + M G D+ DQ NG+   DH S T FWRRV++ K   ALTNA L+ + W VEL   + +E E   P+A   E+++  +  T   TL K+          E+A WD  +   LMA+C     +KG        ++     +PA   W      +GR C NP C + +   C C   C     +GV+MC  C+ S  +H  A  A
Sbjct:  368 IFISTIHVAQPAKGKGGGRWNRPLQAFASIVSLNISLTTAGPFGL------------PVGGRSSVFYFMCASMKLL-----AACDITSYCLTSSVDGGMKGDPKLRPYMDCPLGRTTRHVLHVLLGECGVLRQKIDGSGVFIAMDNYFTSPTLFECLASHDIFAVGTCRADRTA---GADAYLESLGRTIPNRGDMNFCRSGQVACVQWADSKDIFLISTIHVAQPAKGKEEAGGIDHFKPLPLSLRAKGRNGEPLDLQQPYMRMDYVLNMLGVDLADQQNGSHTHDHKSYTNFWRRVYDAKLEQALTNAFLIFRKW-VEL---LIREVEAKKPIAPGGELEELELASTELATLSKV----------ERAVWDEQMATLLMAECNVARPNKG-------GKRPASDNKPADPVWGSVTLKSGRLCLNPTCKTTSMKGCSCKQFCTWGDKAGVLMCETCWKSPESHEQAAKA 797          
BLAST of mRNA_F-serratus_M_contig652.17508.1 vs. uniprot
Match: A0A6H5JVE2_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVE2_9PHAE)

HSP 1 Score: 207 bits (528), Expect = 1.820e-56
Identity = 117/298 (39.26%), Postives = 157/298 (52.68%), Query Frame = 2
Query: 1778 WSLHPNYNFPNIRNCMPRDFWYLLYSRFLHFA---------PAGGNTG--DKLHHIRKLEEILNSAWSSAGDIGAWLSFDEQMFKDTSVAGRSLQRYNPMKPIKRGIKSWGVACSTGYCFASRIDGGWKGNPPMAPMEDCPLGKIPNLVMQCMLHSCPELTEKIDGLGVYVAMDNFFTSPTLLLCLETHKIYGVGTVRTNRMGLKGAAEVFREEGGKLLKKGDMNFARSGTLAVVEWKDTKVVTLLSTIH--------NTAKDFEPQLFEKRQAGGKGPCVGV-QPQARKSYNIKMSG 2611
            WS   + N+P ++ CM RD + LLYSRFL  +         P G +    D   HIR LE+ILN AW    D+G W+ +DEQM K  S   + L  +NP KPI  G+K +  +   GYC  + IDG +KG+P + P+EDCPLGK    V+  +L  C  L  K+ G GV++AM N+FTSPTL  CL +H I+ V T R+ R    GA       G  +  +GDM F RSG +A V+W+D+K + L ST+H             F+P L   +  G  G      QP  R  Y   M G
Sbjct:    5 WSESAHDNYPMVQECMQRDLFELLYSRFLPCSDPNAPPRQLPTGEDNPEYDLKWHIRDLEKILNRAWYV--DLGQWMCYDEQMVKTVSTFSKGLAHFNPAKPITHGMKQYAASDRNGYCLINSIDGSFKGDPSLGPLEDCPLGKTTRHVLHVLLEECETLRGKLVGSGVFIAMANYFTSPTLFACLASHDIFAVATCRSPRTC--GALPYMESLGHTIPNRGDMTFCRSGEMAFVQWRDSKEILLYSTVHIGETGGEGGGINHFKPVLLALKGKGRAGKHKEHDQPVMRMDYVKYMGG 298          
BLAST of mRNA_F-serratus_M_contig652.17508.1 vs. uniprot
Match: A0A6H5KH92_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH92_9PHAE)

HSP 1 Score: 203 bits (516), Expect = 5.060e-54
Identity = 105/250 (42.00%), Postives = 141/250 (56.40%), Query Frame = 2
Query: 1778 WSLHPNYNFPNIRNCMPRDFWYLLYSRFLHFA---------PAGGNTG--DKLHHIRKLEEILNSAWSSAGDIGAWLSFDEQMFKDTSVAGRSLQRYNPMKPIKRGIKSWGVACSTGYCFASRIDGGWKGNPPMAPMEDCPLGKIPNLVMQCMLHSCPELTEKIDGLGVYVAMDNFFTSPTLLLCLETHKIYGVGTVRTNRMGLKGAAEVFREEGGKLLKKGDMNFARSGTLAVVEWKDTKVVTLLSTIH 2494
            WS   + N+P +R CM RD + LLYSRFLH++         P G +    D   HIR LE+ILN A     D+G WL +DEQ+ K  S   + L  +NP KPI  G+K +  +   GYC  + IDG + G+P + P+EDCPLGK    V+  +L  C  L  K+ G  V++AMDN+FTSPTL  CL +H I+ VGT R+ R    GA       G       DM F RS  +A V+W+D+K + L ST+H
Sbjct:    5 WSESAHDNYPLVRKCMQRDLFELLYSRFLHYSNPNAPPRQLPTGEDNPKYDSKWHIRDLEKILNRACPWXVDLGQWLCYDEQVLKTVSTFSKGLAHFNPAKPITHGMKQYAASDRNGYCLINSIDGSFTGDPSLRPLEDCPLGKTTRHVLHVLLEECETLRGKLVGSSVFIAMDNYFTSPTLFTCLASHDIFAVGTWRSPRTC--GALPYMESLGRTTPNPDDMTFCRSVEMAFVQWRDSKEILLCSTVH 252          
BLAST of mRNA_F-serratus_M_contig652.17508.1 vs. uniprot
Match: A0A6H5KCK7_9PHAE (DDE_Tnp_1_7 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCK7_9PHAE)

HSP 1 Score: 197 bits (500), Expect = 2.880e-51
Identity = 140/427 (32.79%), Postives = 202/427 (47.31%), Query Frame = 2
Query: 2096 YCFASRIDGGWKGNPPMAPMEDCPLGKIPNLVMQCMLHSCPELTEKIDGLGVYVAMDNFFTSPTLLLCLETHKIYGVGTVRTNRMGLKGAAEVFREEGGKLLKKGDMNFARSGTLAVVEWKDTKVVTLLSTIHNT---AKDFEPQ------------------------------LFEKRQAGGKGPCVGVQ-PQARKSYNIKMSGCDINDQLNGARMIDHMSKTFFWRRVFEGKFFTALTNACLLKKMWAVELTEGIDKEFELVGPLAEDEVKDGPMTGTSRCTLLKLKKRVRQVERMEKAKWDMDLCDYLMAKCKRGHADKGLHQHLRT--PEQVLPPPRPASAKWEKPIPSAGRTCDNPECGSRTKGACRCTDC-------GSGVVMCMKCFLSDTAHTAARTARFALERPMQTRRKRPIDWSK 3247
            YCF S +DGG  G+P +    DCPLG+    V+  +L +C +  +KIDG GVY+AMDN+FTSPTL  CL +H I+ VGT R+NR G  GA    +    + +++G+M+FAR+G +A V+W D+K + L S+IH     A   EP+                              +F  R+AG  G  + +Q P  RK Y   M G +  DQ N +   DH S T  WRRV EGKF    TN  ++ K +   L +  +K  +  G   E EV +          L ++   + ++ +ME+A WD  L   LMA+C  G  +KG      T  P++V          W        R C +P C S+T   C C +          GV+MC  CF +   H  A  A+   ++     RK  + WS+
Sbjct:   12 YCFVSSVDGGMNGDPKLRVWFDCPLGRTTRHVLHVLLGACKKFGDKIDGSGVYIAMDNYFTSPTLFECLASHDIFAVGTCRSNRTG--GAVPYLQSLDRRPVERGEMHFARAGNVAFVQWLDSKEIILCSSIHIAQPHAAIGEPKKEDSDGGDDHFAPLPYRCFVCPLPSRPHPFMFSLRKAGQAGKSLELQQPWMRKDYVANMGGVETADQQNVSHTHDHKSYTNHWRRVIEGKFERRFTNIVVMFKKYVSLLEDQANKRIK--GGGLELEVVE---------KLDRVLVELGRLAKMERAVWDEMLSTELMARCNVGRPNKGGRPAAVTGAPDKV----------WGSISVKTQRKCMHPGCKSKTSKGCACAELCVGKQAGDRGVLMCQACFNNPVKHARAGDAQRNPQKYGVVGRKDLVWWSR 415          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig652.17508.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KMF5_9PHAE1.570e-8136.57DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JW40_9PHAE1.690e-8036.61HTH La-type RNA-binding domain-containing protein ... [more]
A0A6H5K5P5_9PHAE1.010e-7439.60DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5KVX6_9PHAE7.740e-6739.73DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5KJJ0_9PHAE2.880e-6533.46DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5KCC7_9PHAE8.470e-5836.26DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5LEE0_9PHAE1.930e-5734.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVE2_9PHAE1.820e-5639.26DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5KH92_9PHAE5.060e-5442.00DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5KCK7_9PHAE2.880e-5132.79DDE_Tnp_1_7 domain-containing protein n=3 Tax=Ecto... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig652contigF-serratus_M_contig652:167726..172642 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score125.2
Seed ortholog evalue1.5e-25
Seed eggNOG ortholog7425.NV18906-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.piggyBac transposable element-derived protein 4-like
EggNOG OGs28PUT@1,2QWHD@2759,38EA4@33154,3BMU4@33208,3CZSB@33213,3SP2M@50557,420QI@6656,46MFA@7399
COG Functional cat.S
Best tax levelHymenoptera
Best eggNOG OGNA|NA|NA
Exons6
Model size3299
Cds size2553
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig652.17508.1prot_F-serratus_M_contig652.17508.1Fucus serratus malepolypeptideF-serratus_M_contig652 167736..171906 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932012.6773531-UTR-F-serratus_M_contig652:167725..1677351622932012.6773531-UTR-F-serratus_M_contig652:167725..167735Fucus serratus maleUTRF-serratus_M_contig652 167726..167735 -
1690964102.154153-UTR-F-serratus_M_contig652:167725..1677351690964102.154153-UTR-F-serratus_M_contig652:167725..167735Fucus serratus maleUTRF-serratus_M_contig652 167726..167735 -
1622932012.8195531-UTR-F-serratus_M_contig652:171906..1726421622932012.8195531-UTR-F-serratus_M_contig652:171906..172642Fucus serratus maleUTRF-serratus_M_contig652 171907..172642 -
1690964102.2502754-UTR-F-serratus_M_contig652:171906..1726421690964102.2502754-UTR-F-serratus_M_contig652:171906..172642Fucus serratus maleUTRF-serratus_M_contig652 171907..172642 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932012.694036-CDS-F-serratus_M_contig652:167735..1684951622932012.694036-CDS-F-serratus_M_contig652:167735..168495Fucus serratus maleCDSF-serratus_M_contig652 167736..168495 -
1690964102.1725752-CDS-F-serratus_M_contig652:167735..1684951690964102.1725752-CDS-F-serratus_M_contig652:167735..168495Fucus serratus maleCDSF-serratus_M_contig652 167736..168495 -
1622932012.7130225-CDS-F-serratus_M_contig652:168858..1693271622932012.7130225-CDS-F-serratus_M_contig652:168858..169327Fucus serratus maleCDSF-serratus_M_contig652 168859..169327 -
1690964102.1827571-CDS-F-serratus_M_contig652:168858..1693271690964102.1827571-CDS-F-serratus_M_contig652:168858..169327Fucus serratus maleCDSF-serratus_M_contig652 168859..169327 -
1622932012.7325864-CDS-F-serratus_M_contig652:169528..1696741622932012.7325864-CDS-F-serratus_M_contig652:169528..169674Fucus serratus maleCDSF-serratus_M_contig652 169529..169674 -
1690964102.1988993-CDS-F-serratus_M_contig652:169528..1696741690964102.1988993-CDS-F-serratus_M_contig652:169528..169674Fucus serratus maleCDSF-serratus_M_contig652 169529..169674 -
1622932012.7592633-CDS-F-serratus_M_contig652:169882..1702111622932012.7592633-CDS-F-serratus_M_contig652:169882..170211Fucus serratus maleCDSF-serratus_M_contig652 169883..170211 -
1690964102.2095766-CDS-F-serratus_M_contig652:169882..1702111690964102.2095766-CDS-F-serratus_M_contig652:169882..170211Fucus serratus maleCDSF-serratus_M_contig652 169883..170211 -
1622932012.777387-CDS-F-serratus_M_contig652:170472..1707511622932012.777387-CDS-F-serratus_M_contig652:170472..170751Fucus serratus maleCDSF-serratus_M_contig652 170473..170751 -
1690964102.2218087-CDS-F-serratus_M_contig652:170472..1707511690964102.2218087-CDS-F-serratus_M_contig652:170472..170751Fucus serratus maleCDSF-serratus_M_contig652 170473..170751 -
1622932012.7999642-CDS-F-serratus_M_contig652:171336..1719061622932012.7999642-CDS-F-serratus_M_contig652:171336..171906Fucus serratus maleCDSF-serratus_M_contig652 171337..171906 -
1690964102.2322972-CDS-F-serratus_M_contig652:171336..1719061690964102.2322972-CDS-F-serratus_M_contig652:171336..171906Fucus serratus maleCDSF-serratus_M_contig652 171337..171906 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig652.17508.1

>prot_F-serratus_M_contig652.17508.1 ID=prot_F-serratus_M_contig652.17508.1|Name=mRNA_F-serratus_M_contig652.17508.1|organism=Fucus serratus male|type=polypeptide|length=851bp
MYLSRNEARGQSTTTVSAHQDFDRIVLKEKERTYFKGLLEKSWKNLTIPA
PSPSSTAPIQPKPVSPQCSHVFLIGKKKGTQCQKRRSPLGGGRCSRHKRK
TAGPAPPGKSSHGQRGQGAAAGVKHSGGEVDLEGSDMELDEEEELQWTVG
EGNGKHTKTGKSEEAIERLAAKVPEAYRSVFRRVHELQKTGEMRENDEDD
QESIGGESEKRWYPHGLPNNDEEYEKRMARDGETAKLSASSRAALPRLRV
EDIPRIVQDTGPLAFEMLQLTFPPEALELVRDMTNKYFEFCQSREPDTGR
EKRHEAKGPTSGFAKFPEGGITDDDVYGMLGIVVHMGLVRTCRFANAWSL
HPNYNFPNIRNCMPRDFWYLLYSRFLHFAPAGGNTGDKLHHIRKLEEILN
SAWSSAGDIGAWLSFDEQMFKDTSVAGRSLQRYNPMKPIKRGIKSWGVAC
STGYCFASRIDGGWKGNPPMAPMEDCPLGKIPNLVMQCMLHSCPELTEKI
DGLGVYVAMDNFFTSPTLLLCLETHKIYGVGTVRTNRMGLKGAAEVFREE
GGKLLKKGDMNFARSGTLAVVEWKDTKVVTLLSTIHNTAKDFEPQLFEKR
QAGGKGPCVGVQPQARKSYNIKMSGCDINDQLNGARMIDHMSKTFFWRRV
FEGKFFTALTNACLLKKMWAVELTEGIDKEFELVGPLAEDEVKDGPMTGT
SRCTLLKLKKRVRQVERMEKAKWDMDLCDYLMAKCKRGHADKGLHQHLRT
PEQVLPPPRPASAKWEKPIPSAGRTCDNPECGSRTKGACRCTDCGSGVVM
CMKCFLSDTAHTAARTARFALERPMQTRRKRPIDWSKFDRQQRQRNAPNV
*
back to top

mRNA from alignment at F-serratus_M_contig652:167726..172642-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig652.17508.1 ID=mRNA_F-serratus_M_contig652.17508.1|Name=mRNA_F-serratus_M_contig652.17508.1|organism=Fucus serratus male|type=mRNA|length=4917bp|location=Sequence derived from alignment at F-serratus_M_contig652:167726..172642- (Fucus serratus male)
GCCAAGTTCTGCTGAGACATCCACGACAGCACCCACCCAAAACCTTTTAC ACAGGGAAAATCATCAGTCCTGCCGCGTTCCTGGACTCCACTTTCAATTA TCTCTGCCTTTCCAGGATGTCGGATGTCCACAACAACCTCTTACCGTGCT CGAGCCTGATGTCCAACCAAGCTAGACCCGAGTACCAGCAAGGTCACCAG GCCATCGAGCGAGGGATGAGTATATTCAAGGAGCTTGAGAAACTAAACCT TCGTAGTGATGACTGTACTGTAATCGAGGCAGATCAAAACGGCAAGTGCG GGTGGGCATCGCTAGCTTTTGACCTCGCAAATTGTTCGGACGGGATTGAT ATGGACGATACTGAGAGACTGAAGGTTGATGTTTTGGAAAACGCTATCAA TTGGTCTATCTCCAGTAGTCTTGGCGCTTCCGATGACAGGCTCCTGTCAG CCCTTGAATCTGCGAATCTCAGAAGAATGTGCATCAAGCTCGGACCTCGT CCTGAAACAATGGCGAGCGTGAGGGATGCCCTCAAAGGAATGCGGGACGA CGAAGATTTCTCTATGCCGCTTCCGAAGTGCTGAAAACAACCATCTGCAT TTGGGAGCCTGCTGCAGATGGCCAAAACTTTGAACTGTACCGTTCAGATC AGCATAAAGGTGTTTTCTTCCATCCAGATTTAACGGTGCCTCCAATTCAC CTGCTCTACAACAGCGGAAAAATTGGAGGCAGCAAGATGTATTTATCTCG AAACGAAGCAAGGGGCCAGAGCACGACGACGGTATCAGCACATCAGGACT TTGATCGAATTGTGCTCAAAGAAAAGGAGAGGACATACTTCAAAGGATTG CTCGAAAAATCCTGGAAAAATCTCACCATCCCGGCGCCCTCGCCGTCGAG TACCGCACCAATACAGCCAAAGCCTGTATCCCCGCAGTGTTCCCACGTGT TCCTCATTGGGAAAAAAAAGGGAACCCAATGCCAAAAGAGACGGAGCCCA CTCGGAGGTGGTAGATGTAGCCGACACAAGAGGAAAACGGCGGGACCTGC TCCGCCTGGCAAGAGTAGCCATGGACAGCGCGGCCAAGGAGCGGCCGCAG GTGTCAAACACTCTGGGGGGGAGGTGGACCTTGAGGGATCCGACATGGAG CTTGATGAGGAAGAGGAACTCCAATGGACTGTTGGCGAGGGAAATGGTAA ACACACCAAAACCGGAAAGTCCGAGGAGGCCATCGAGAGGCTTGCTGCGA AAGTCCCAGAGGCGTACCGGAGCGTGTTCCGACGTGTACACGAGCTCCAA AAAACGGTGAGCGTGCATAGAGTTTAGAGCGAAGTACTTGCCGCAGACAT TTTCACTAGTGGCATGTTATCGCTGACTTTCCAAGGTATCACGCAAGCGT CCCGGGCTGCGTGTGGGGGGTTACCCTGATGTTATTAGATCGAAAGATAG CATTTCCAGGCCTGAAATGCTGATTCCAAAATCACACAAGAGACTCCCCT CCCCCCGCCGCGTCATACGACTGCAATGAGTTGATTGTACATTTTGTTTT CGTACTTTTCTTGCACGTCGAAGCACCAGTCGACCATCGCAACCCATTAT TGCCTTTAGTTGGCGCTCCTGCTTGATCTTTGGTACCACCTTTTACTCGT GTATGTATTATACATTCCGGTACTTACTGCTGTACGCACCAGTCGTTTTT TGGCGTGGAAAAGTTCGCCAGGAGGAATATCGCACTTCTGCAGTATGTAT ACCCATTCTGTAGTAGGCCAGTTATTTTGTTGTACTCGCCAGTATCAGAG TTCGCGGATTGGTATAGAACCACGAAACACTCAACCGCGTATCCACCCCC GCGTTCCTTACCGCTGACCCCCTTTTTCCTTGCGAGAGCAGGGGGAGATG CGCGAGAATGACGAAGACGATCAGGAGAGTATAGGGGGAGAAAGCGAAAA AAGGTGGTACCCGCACGGATTGCCCAACAATGACGAGGAGTACGAGAAGC GCATGGCAAGGGATGGGGAGACGGCGAAGTTATCAGCCAGCTCGCGTGCG GCACTCCCTCGGCTAAGGGTTGAAGATATTCCCCGGATCGTGCAAGACAC TGGACCTCTGGCGTTCGAGATGTTGCAGCTCACTTTCCCGCCGGAAGCCC TGGAACTCGTTAGAGATATGGTAAGTGTGAGAGTCTCTACAAAAGTAGTC CATGGAGCACGAGAGTGCCAGCGTTCATGAGCGTACCCGCTACAGTACGG TCGCACCGGTGTGTCTACGGTGGCAATGCATGCGTAGCAAAATCGGTACA ACTTATTGTATATGATGACGGCCCAACTACAGCTCTCTGAGTGCAACATC CCACCTCTTCCTCTATACCCCAACCAAGCAACCCACAATCGCCCCCTTGT GCCTCTCCCGCTGATAATATTTTGTTGGAAGACGAACAAATACTTCGAGT TTTGCCAGAGCAGAGAGCCCGATACCGGGAGGGAGAAGCGACACGAGGCA AAGGGACCAACGTCGGGTTTTGCGAAGTTCCCGGAAGGAGGAATAACTGA TGATGACGTCTACGGCATGCTGGGGATCGTTGTTCACATGGGTCTCGTTC GCACGTGCCGGTTTGCAAACGCCTGGTCTTTACACCCGAACTACAACTTC CCGAATATCCGCAACTGCATGCCTCGGGACTTTTGGTATTTACTGTACAG CCGTTTCTTACATTTTGCCCCGGCAGGAGGGAACACGGGCGACAAGCTAC ACCACATTAGGTGAAGGCGCTCAAGAAACAACAAACAAATGGCTACAGGA ATATAAATGTGTATGTTCCGCTTGAGTTTTCTCATAGCCGGACGGTGAGA TATTGTTTAACCAACGCACTGCATAGTAACCTATGCTTCTTGCCGCAGTG GTTGCGGAGTCCACACTGCTCGAAATTACTCAGTGGAATGGCTCTATTTT TTTTTACCGTGTTCGCAGGAAGCTGGAAGAAATACTCAACAGCGCGTGGA GCTCAGCGGGTGACATAGGGGCGTGGCTATCCTTCGACGAACAGATGTTC AAGGATACAAGCGTAGCCGGCCGGTCTCTGCAGCGCTATAACCCCATGAA GCCCATCAAGAGGGGTGAGTGCCGCCCTGGAGGAGAACACGATTGCAGCA GTATCAAATTCATGAACGGGTTGACTATCAGCACCACAGTTTTTTTTTTA ATTACGACTGCCCTATCTCCTCCTTGCTCCCATCACACACGTGCCCTCTG GACATCGATCGGCATTAATCGTGTCTGTTCTCGTGATTATATTCCATCGC TGCCCACACCTCCAGGCATCAAGTCATGGGGGGTAGCCTGCAGCACTGGG TACTGTTTTGCTAGTCGCATCGACGGTGGGTGGAAGGGGAACCCACCAAT GGCTCCGATGGAAGATTGCCCCTTGGGAAAAATCCCAAATTTGGTGATGC AGTGCATGCTCCACAGTTGCCCAGAGCTGACCGAGAAGATCGATGGCTTA GGCGTCTACGTGGCGATGGACAATTTTTTCACGTCGCCGACACTCCTACT TTGCCTGGAGACCCACAAGATCTATGGTGTGGGGACTGTCCGGACAAACA GGATGGGATTGAAAGGCGCGGCGGAGGTGTTTCGGGAGGAGGGTGGCAAG CTGTTGAAAAAGGGAGACATGAACTTCGCGCGTTCGGGCACTCTGGCGGT TGTAGAGTGGAAGGACACGAAGGTAGTCACACTGCTGTCTACCATCCACA ACACGGCGAAGGACTTCGAGCCACAACTATTCGAGTAAGTCCAGTTGCAT CGAGTTTGTTTCTTATCGCCACATTTGACCTTTTATATGCTCTGCCGTGG TTGTTTTTTCCAGACGCGTCTTTCAAGATATAGCCCTCCTGATTCCGAGC GTTTTTGATAATTCGATCTCGTGCACTATATAGGTAATTCCGTAAAAAAA TTGGATTTCTCGATTTCTTATCTGACCACGAGTGGGATCGGCAACTAGAT CGTCTACAAGTGTCAATCTCTTCGCTACAGAAATGATCCCATCTCTTCCA GGTATTTTGAGAATTATTTTTTCACATAGATATCAGCAATGTTGTCGACT GAAATATCAACCCCTGTTCCCACTCCTATTTTTTTCTGCATCGACAGGAA GCGCCAGGCTGGCGGCAAGGGGCCCTGTGTCGGTGTCCAACCCCAGGCTC GGAAGAGCTACAATATCAAGATGTCCGGCTGCGACATCAATGACCAGCTA AACGGGGCGCGCATGATCGACCACATGTCGAAAACCTTCTTTTGGCGCCG GGTATTCGAAGGCAAATTTTTCACAGCGCTAACCAACGCATGTCTTCTCA AAAAGATGTGGGCCGTCGAACTGACGGAGGGCATTGACAAGGAGTTTGAG CTTGTTGGGCCTCTAGCCGAAGACGAAGTCAAGGATGGACCGATGACTGG CACCTCGAGGTGCACACTGCTTAAGCTCAAGAAACGGGTTAGGCAGGTCG AGCGCATGGAAAAGGCGAAGTGGGACATGGACCTGTGTGACTACCTCATG GCCAAGTGCAAGCGGGGGCATGCCGACAAGGGTCTTCATCAACACCTTCG AACGCCGGAGCAGGTTCTGCCGCCCCCGCGACCTGCGTCCGCAAAGTGGG AAAAACCAATACCCTCGGCTGGTCGAACGTGCGACAATCCTGAATGTGGC TCGCGGACGAAGGGAGCATGTCGCTGCACAGACTGCGGTTCCGGGGTGGT CATGTGCATGAAGTGCTTCCTCAGCGACACCGCGCACACGGCAGCTCGGA CAGCAAGATTTGCGCTGGAACGGCCGATGCAAACACGCCGCAAGCGACCT ATAGATTGGTCAAAGTTTGATCGCCAACAGAGGCAGCGTAACGCGCCAAA TGTTTGACCAAGAGGGG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig652:167726..172642-

>mRNA_F-serratus_M_contig652.17508.1 ID=mRNA_F-serratus_M_contig652.17508.1|Name=mRNA_F-serratus_M_contig652.17508.1|organism=Fucus serratus male|type=CDS|length=5106bp|location=Sequence derived from alignment at F-serratus_M_contig652:167726..172642- (Fucus serratus male)
ATGTATTTATCTCGAAACGAAGCAAGGGGCCAGAGCACGACGACGGTATC
AGCACATCAGGACTTTGATCGAATTGTGCTCAAAGAAAAGGAGAGGACAT
ACTTCAAAGGATTGCTCGAAAAATCCTGGAAAAATCTCACCATCCCGGCG
CCCTCGCCGTCGAGTACCGCACCAATACAGCCAAAGCCTGTATCCCCGCA
GTGTTCCCACGTGTTCCTCATTGGGAAAAAAAAGGGAACCCAATGCCAAA
AGAGACGGAGCCCACTCGGAGGTGGTAGATGTAGCCGACACAAGAGGAAA
ACGGCGGGACCTGCTCCGCCTGGCAAGAGTAGCCATGGACAGCGCGGCCA
AGGAGCGGCCGCAGGTGTCAAACACTCTGGGGGGGAGGTGGACCTTGAGG
GATCCGACATGGAGCTTGATGAGGAAGAGGAACTCCAATGGACTGTTGGC
GAGGGAAATGGTAAACACACCAAAACCGGAAAGTCCGAGGAGGCCATCGA
GAGGCTTGCTGCGAAAGTCCCAGAGGCGTACCGGAGCGTGTTCCGACGTG
TACACGAGCTCCAAAAAACGATGTATTTATCTCGAAACGAAGCAAGGGGC
CAGAGCACGACGACGGTATCAGCACATCAGGACTTTGATCGAATTGTGCT
CAAAGAAAAGGAGAGGACATACTTCAAAGGATTGCTCGAAAAATCCTGGA
AAAATCTCACCATCCCGGCGCCCTCGCCGTCGAGTACCGCACCAATACAG
CCAAAGCCTGTATCCCCGCAGTGTTCCCACGTGTTCCTCATTGGGAAAAA
AAAGGGAACCCAATGCCAAAAGAGACGGAGCCCACTCGGAGGTGGTAGAT
GTAGCCGACACAAGAGGAAAACGGCGGGACCTGCTCCGCCTGGCAAGAGT
AGCCATGGACAGCGCGGCCAAGGAGCGGCCGCAGGTGTCAAACACTCTGG
GGGGGAGGTGGACCTTGAGGGATCCGACATGGAGCTTGATGAGGAAGAGG
AACTCCAATGGACTGTTGGCGAGGGAAATGGTAAACACACCAAAACCGGA
AAGTCCGAGGAGGCCATCGAGAGGCTTGCTGCGAAAGTCCCAGAGGCGTA
CCGGAGCGTGTTCCGACGTGTACACGAGCTCCAAAAAACGGGGGAGATGC
GCGAGAATGACGAAGACGATCAGGAGAGTATAGGGGGAGAAAGCGAAAAA
AGGTGGTACCCGCACGGATTGCCCAACAATGACGAGGAGTACGAGAAGCG
CATGGCAAGGGATGGGGAGACGGCGAAGTTATCAGCCAGCTCGCGTGCGG
CACTCCCTCGGCTAAGGGTTGAAGATATTCCCCGGATCGTGCAAGACACT
GGACCTCTGGCGTTCGAGATGTTGCAGCTCACTTTCCCGCCGGAAGCCCT
GGAACTCGTTAGAGATATGGGGGAGATGCGCGAGAATGACGAAGACGATC
AGGAGAGTATAGGGGGAGAAAGCGAAAAAAGGTGGTACCCGCACGGATTG
CCCAACAATGACGAGGAGTACGAGAAGCGCATGGCAAGGGATGGGGAGAC
GGCGAAGTTATCAGCCAGCTCGCGTGCGGCACTCCCTCGGCTAAGGGTTG
AAGATATTCCCCGGATCGTGCAAGACACTGGACCTCTGGCGTTCGAGATG
TTGCAGCTCACTTTCCCGCCGGAAGCCCTGGAACTCGTTAGAGATATGAC
GAACAAATACTTCGAGTTTTGCCAGAGCAGAGAGCCCGATACCGGGAGGG
AGAAGCGACACGAGGCAAAGGGACCAACGTCGGGTTTTGCGAAGTTCCCG
GAAGGAGGAATAACTGATGATGACGTCTACGGCATGCTGGGGATCGTTGT
TCACATGGGTCTCGTTCGCACGTGCCGGTTTGCAAACGCCTGGTCTTTAC
ACCCGAACTACAACTTCCCGAATATCCGCAACTGCATGCCTCGGGACTTT
TGGTATTTACTGTACAGCCGTTTCTTACATTTTGCCCCGGCAGGAGGGAA
CACGGGCGACAAGCTACACCACATTAGACGAACAAATACTTCGAGTTTTG
CCAGAGCAGAGAGCCCGATACCGGGAGGGAGAAGCGACACGAGGCAAAGG
GACCAACGTCGGGTTTTGCGAAGTTCCCGGAAGGAGGAATAACTGATGAT
GACGTCTACGGCATGCTGGGGATCGTTGTTCACATGGGTCTCGTTCGCAC
GTGCCGGTTTGCAAACGCCTGGTCTTTACACCCGAACTACAACTTCCCGA
ATATCCGCAACTGCATGCCTCGGGACTTTTGGTATTTACTGTACAGCCGT
TTCTTACATTTTGCCCCGGCAGGAGGGAACACGGGCGACAAGCTACACCA
CATTAGGAAGCTGGAAGAAATACTCAACAGCGCGTGGAGCTCAGCGGGTG
ACATAGGGGCGTGGCTATCCTTCGACGAACAGATGTTCAAGGATACAAGC
GTAGCCGGCCGGTCTCTGCAGCGCTATAACCCCATGAAGCCCATCAAGAG
GGGAAGCTGGAAGAAATACTCAACAGCGCGTGGAGCTCAGCGGGTGACAT
AGGGGCGTGGCTATCCTTCGACGAACAGATGTTCAAGGATACAAGCGTAG
CCGGCCGGTCTCTGCAGCGCTATAACCCCATGAAGCCCATCAAGAGGGGC
ATCAAGTCATGGGGGGTAGCCTGCAGCACTGGGTACTGTTTTGCTAGTCG
CATCGACGGTGGGTGGAAGGGGAACCCACCAATGGCTCCGATGGAAGATT
GCCCCTTGGGAAAAATCCCAAATTTGGTGATGCAGTGCATGCTCCACAGT
TGCCCAGAGCTGACCGAGAAGATCGATGGCTTAGGCGTCTACGTGGCGAT
GGACAATTTTTTCACGTCGCCGACACTCCTACTTTGCCTGGAGACCCACA
AGATCTATGGTGTGGGGACTGTCCGGACAAACAGGATGGGATTGAAAGGC
GCGGCGGAGGTGTTTCGGGAGGAGGGTGGCAAGCTGTTGAAAAAGGGAGA
CATGAACTTCGCGCGTTCGGGCACTCTGGCGGTTGTAGAGTGGAAGGACA
CGAAGGTAGTCACACTGCTGTCTACCATCCACAACACGGCGAAGGACTTC
GAGCCACAACTATTCGAGCATCAAGTCATGGGGGGTAGCCTGCAGCACTG
GGTACTGTTTTGCTAGTCGCATCGACGGTGGGTGGAAGGGGAACCCACCA
ATGGCTCCGATGGAAGATTGCCCCTTGGGAAAAATCCCAAATTTGGTGAT
GCAGTGCATGCTCCACAGTTGCCCAGAGCTGACCGAGAAGATCGATGGCT
TAGGCGTCTACGTGGCGATGGACAATTTTTTCACGTCGCCGACACTCCTA
CTTTGCCTGGAGACCCACAAGATCTATGGTGTGGGGACTGTCCGGACAAA
CAGGATGGGATTGAAAGGCGCGGCGGAGGTGTTTCGGGAGGAGGGTGGCA
AGCTGTTGAAAAAGGGAGACATGAACTTCGCGCGTTCGGGCACTCTGGCG
GTTGTAGAGTGGAAGGACACGAAGGTAGTCACACTGCTGTCTACCATCCA
CAACACGGCGAAGGACTTCGAGCCACAACTATTCGAGAAGCGCCAGGCTG
GCGGCAAGGGGCCCTGTGTCGGTGTCCAACCCCAGGCTCGGAAGAGCTAC
AATATCAAGATGTCCGGCTGCGACATCAATGACCAGCTAAACGGGGCGCG
CATGATCGACCACATGTCGAAAACCTTCTTTTGGCGCCGGGTATTCGAAG
GCAAATTTTTCACAGCGCTAACCAACGCATGTCTTCTCAAAAAGATGTGG
GCCGTCGAACTGACGGAGGGCATTGACAAGGAGTTTGAGCTTGTTGGGCC
TCTAGCCGAAGACGAAGTCAAGGATGGACCGATGACTGGCACCTCGAGGT
GCACACTGCTTAAGCTCAAGAAACGGGTTAGGCAGGTCGAGCGCATGGAA
AAGGCGAAGTGGGACATGGACCTGTGTGACTACCTCATGGCCAAGTGCAA
GCGGGGGCATGCCGACAAGGGTCTTCATCAACACCTTCGAACGCCGGAGC
AGGTTCTGCCGCCCCCGCGACCTGCGTCCGCAAAGTGGGAAAAACCAATA
CCCTCGGCTGGTCGAACGTGCGACAATCCTGAATGTGGCTCGCGGACGAA
GGGAGCATGTCGCTGCACAGACTGCGGTTCCGGGGTGGTCATGTGCATGA
AGTGCTTCCTCAGCGACACCGCGCACACGGCAGCTCGGACAGCAAGATTT
GCGCTGGAACGGCCGATGCAAACACGCCGCAAGCGACCTATAGATTGGTC
AAAGTTTGATCGCCAACAGAGGCAGCGTAACGCGCCAAATGTTTGAGAAG
CGCCAGGCTGGCGGCAAGGGGCCCTGTGTCGGTGTCCAACCCCAGGCTCG
GAAGAGCTACAATATCAAGATGTCCGGCTGCGACATCAATGACCAGCTAA
ACGGGGCGCGCATGATCGACCACATGTCGAAAACCTTCTTTTGGCGCCGG
GTATTCGAAGGCAAATTTTTCACAGCGCTAACCAACGCATGTCTTCTCAA
AAAGATGTGGGCCGTCGAACTGACGGAGGGCATTGACAAGGAGTTTGAGC
TTGTTGGGCCTCTAGCCGAAGACGAAGTCAAGGATGGACCGATGACTGGC
ACCTCGAGGTGCACACTGCTTAAGCTCAAGAAACGGGTTAGGCAGGTCGA
GCGCATGGAAAAGGCGAAGTGGGACATGGACCTGTGTGACTACCTCATGG
CCAAGTGCAAGCGGGGGCATGCCGACAAGGGTCTTCATCAACACCTTCGA
ACGCCGGAGCAGGTTCTGCCGCCCCCGCGACCTGCGTCCGCAAAGTGGGA
AAAACCAATACCCTCGGCTGGTCGAACGTGCGACAATCCTGAATGTGGCT
CGCGGACGAAGGGAGCATGTCGCTGCACAGACTGCGGTTCCGGGGTGGTC
ATGTGCATGAAGTGCTTCCTCAGCGACACCGCGCACACGGCAGCTCGGAC
AGCAAGATTTGCGCTGGAACGGCCGATGCAAACACGCCGCAAGCGACCTA
TAGATTGGTCAAAGTTTGATCGCCAACAGAGGCAGCGTAACGCGCCAAAT
GTTTGA
back to top