mRNA_F-serratus_M_contig652.17507.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig652.17507.1
Unique NamemRNA_F-serratus_M_contig652.17507.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig652.17507.1 vs. uniprot
Match: A0A6H5L2E9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2E9_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 8.730e-28
Identity = 65/154 (42.21%), Postives = 92/154 (59.74%), Query Frame = 2 
Query:   83 KQYEAGDKQAVHRLLIVVASHHPGRIREFLWDASRAVGSLYCIHGDDAPAPLPNIKSLGERREAARVHAGLCGVYNSGSIAGVQLEEVLA----RGGGPTGTKFRNQACFNASRDLNVKGAGVQVSRKECMTEACRALFPGDEAMPEAVQLAMS 532
            + ++ GD  AV R +  V   HP R+REF++DA+ AVG+  C+H DD P  LP   +  +   AA+ H GLCG Y    +AGV  ++V+A    RG   T   FRNQ CF+A++ L   G GVQ++RKEC T+A RA+FPG+    + V+   S
Sbjct:   13 EDFKGGDTLAVLRQMKEVHYSHPERVREFVFDAALAVGAGSCVH-DDPPKALPRGLTRDQGVAAAKEHPGLCGFY----LAGVSYDDVVATAERRGVSVTFNVFRNQCCFDAAKKLRADGMGVQLARKECFTQAFRAVFPGNGTPDQWVETTFS 161
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BLAST of mRNA_F-serratus_M_contig652.17507.1 vs. uniprot
Match: A0A6H5KV53_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV53_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 8.780e-25
Identity = 59/125 (47.20%), Postives = 78/125 (62.40%), Query Frame = 2 
Query:  134 VASHHPGRIREFLWDASRAVGSLYCIHGDDAPAPLPNIKSLGERREAARVHAGLCGVYNSGSIAGVQLEEVLA----RGGGPTGTKFRNQACFNASRDLNVKGAGVQVSRKECMTEACRALFPGD 496
            V   HPGR+REF++DA  A G+  C+H D   A LP   +  +  EAA+ H GLCGVY    +AGV  ++VLA    RG   T     NQ CF+A++ L V G GVQ++RKEC T+A RA+FPG+
Sbjct:    4 VRESHPGRVREFVFDAVVAAGAGSCLHDDPLKA-LPGGLTRDQGVEAAKEHPGLCGVY----LAGVSFDDVLAAAERRGVSVTFNVLLNQCCFDAAKKLRVGGMGVQLARKECFTQAFRAVFPGN 123
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BLAST of mRNA_F-serratus_M_contig652.17507.1 vs. uniprot
Match: A0A6H5K1G2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1G2_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 4.600e-8
Identity = 29/71 (40.85%), Postives = 45/71 (63.38%), Query Frame = 2 
Query:  320 IAGVQLEEVLARGGGPT-GTKFRNQACFNASRDLNVKGAGVQVSRKECMTEACRALFPGDEAMPEAVQLAM 529
            IA VQ      RG   + G +F  +A F+ S  +N +G G+Q++R +C T+ACRA++PGDE +P A+  A+
Sbjct:    5 IAPVQSTAQRKRGRSRSVGVRFPTKASFDTSIQMNARGRGMQITRSDCFTQACRAVWPGDEPVPAAISDAV 75
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BLAST of mRNA_F-serratus_M_contig652.17507.1 vs. uniprot
Match: A0A6H5JN25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN25_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 5.300e-6
Identity = 20/44 (45.45%), Postives = 33/44 (75.00%), Query Frame = 2 
Query:  386 NQACFNASRDLNVKGAGVQVSRKECMTEACRALFPGDEAMPEAV 517
            + A F+ S  +N +G GVQ++R +C T+ACRA++ GDE++P A+
Sbjct:    2 SDASFDTSIQMNARGRGVQITRNDCFTQACRAVWAGDESVPAAI 45
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig652.17507.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5L2E9_9PHAE8.730e-2842.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KV53_9PHAE8.780e-2547.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1G2_9PHAE4.600e-840.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN25_9PHAE5.300e-645.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig652contigF-serratus_M_contig652:165244..166918 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size968
Cds size540
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig652.17507.1prot_F-serratus_M_contig652.17507.1Fucus serratus malepolypeptideF-serratus_M_contig652 165272..166518 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932012.5787802-UTR-F-serratus_M_contig652:165243..1652711622932012.5787802-UTR-F-serratus_M_contig652:165243..165271Fucus serratus maleUTRF-serratus_M_contig652 165244..165271 +
1690964102.0895245-UTR-F-serratus_M_contig652:165243..1652711690964102.0895245-UTR-F-serratus_M_contig652:165243..165271Fucus serratus maleUTRF-serratus_M_contig652 165244..165271 +
1622932012.625524-UTR-F-serratus_M_contig652:166518..1669181622932012.625524-UTR-F-serratus_M_contig652:166518..166918Fucus serratus maleUTRF-serratus_M_contig652 166519..166918 +
1690964102.1356435-UTR-F-serratus_M_contig652:166518..1669181690964102.1356435-UTR-F-serratus_M_contig652:166518..166918Fucus serratus maleUTRF-serratus_M_contig652 166519..166918 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932012.5936446-CDS-F-serratus_M_contig652:165271..1656341622932012.5936446-CDS-F-serratus_M_contig652:165271..165634Fucus serratus maleCDSF-serratus_M_contig652 165272..165634 +
1690964102.1017158-CDS-F-serratus_M_contig652:165271..1656341690964102.1017158-CDS-F-serratus_M_contig652:165271..165634Fucus serratus maleCDSF-serratus_M_contig652 165272..165634 +
1622932012.6120007-CDS-F-serratus_M_contig652:166341..1665181622932012.6120007-CDS-F-serratus_M_contig652:166341..166518Fucus serratus maleCDSF-serratus_M_contig652 166342..166518 +
1690964102.113391-CDS-F-serratus_M_contig652:166341..1665181690964102.113391-CDS-F-serratus_M_contig652:166341..166518Fucus serratus maleCDSF-serratus_M_contig652 166342..166518 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig652.17507.1

>prot_F-serratus_M_contig652.17507.1 ID=prot_F-serratus_M_contig652.17507.1|Name=mRNA_F-serratus_M_contig652.17507.1|organism=Fucus serratus male|type=polypeptide|length=180bp
MASSQTVFPLPADIGNAAKQYEAGDKQAVHRLLIVVASHHPGRIREFLWD
ASRAVGSLYCIHGDDAPAPLPNIKSLGERREAARVHAGLCGVYNSGSIAG
VQLEEVLARGGGPTGTKFRNQACFNASRDLNVKGAGVQVSRKECMTEACR
ALFPGDEAMPEAVQLAMSEGVVDDVEEDG*
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mRNA from alignment at F-serratus_M_contig652:165244..166918+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig652.17507.1 ID=mRNA_F-serratus_M_contig652.17507.1|Name=mRNA_F-serratus_M_contig652.17507.1|organism=Fucus serratus male|type=mRNA|length=1675bp|location=Sequence derived from alignment at F-serratus_M_contig652:165244..166918+ (Fucus serratus male)
CAATCACCGGCGGCCAGCAAATCGACAAATGGCTTCCTCTCAAACGGTGT
TTCCCCTACCTGCCGACATCGGCAATGCTGCAAAACAATACGAAGCTGGC
GACAAGCAGGCTGTTCACCGCCTGCTGATAGTGGTGGCTTCCCACCACCC
TGGACGTATTAGAGAGTTCCTCTGGGATGCCTCTCGTGCTGTCGGATCGC
TATACTGCATACATGGTGACGATGCGCCGGCTCCTCTGCCAAACATCAAG
AGTCTGGGCGAGCGCAGAGAAGCCGCCAGGGTGCATGCTGGACTCTGCGG
CGTCTACAACAGCGGGAGTATCGCCGGCGTTCAGCTGGAAGAAGTGCTGG
CACGGGGAGGAGGGCCAACGGGCACGAAGTTCCGGAATCAGGTAAGTTGC
CACTCCGAGCGTGTGGAATAATTGTTTGCCTTCGTAAACATAGGCTTGTT
TCGGGTCCATTGCACGACTTACACCCGATCGAGTGGGACAACGGCACTAT
TCAGAGAGTAGAGCGCCGTTGAGTGATGTTATTATTGCATTGTTTCCGAT
GTATGTGTACGAGTCGAGTGCAAGGTTATCAAGAGGAAGTTCCCTCGAGC
ATTGCTTTATGAACAGATGTACCCGCTACGTGGCGTGTCCGCCAGAGTTC
ATTCTGCTGTGTGCAATAAGACAACATAAAAAGTTACACCAAGCATCATT
TTGTGAGCACGTCTGCCGCTCGTGTCCGCTTTTGTTAGTGGTATTCTACC
ATGTACTACTGTTGTATCGTGCGCATGCTAATACAGACTTCGAAGTACAT
CCTGTATGTAGCATACAGGAAGTCTTTTGTAGTTATTGGGGGTGAACAAC
CTGGCCGAGACACACTGAAACAATATATACCGGTACCTGATGTTTTTTTT
CATTATTTCTGAAGAGGGTACGTGTAAATTTGACCACAAAATGTTTTGTA
CAGAGAAGATATATGTTACACAAAACAAACATGAGTCTTGTGCCTTGATT
GTGTTATGCACGCAACTTTACAACCAGTTACTTATTTATGAATGAACTAG
AGGAAAACCCGCCTGTTCTAAGTACTTCAGCCCCGCTTTCAACGACAGGC
ATGTTTCAACGCATCACGCGACCTCAACGTGAAGGGCGCAGGAGTACAAG
TGTCTCGCAAGGAGTGCATGACCGAGGCTTGCCGTGCGCTTTTTCCCGGG
GACGAGGCAATGCCTGAGGCTGTCCAGCTAGCCATGTCAGAAGGCGTCGT
AGATGATGTCGAGGAGGACGGTTGATGTGTTATAGAGTTTTGGGGGGGTC
AATATCTTGACGTTCCCGGCACGGTCAGCATATAGACTAATGGGTTATTT
TTCTACTGCTGCGAATGGAACTGAATCATGGTGTTTCACCTGTTTATTAT
GTGTAGCTGTGTGTGAACGAGTACGTGCCTATTCGAGCAATTTTCCATCT
GTTGTGCGACCAATGCCTTAATTAGATTCCCCGGGGACGAGGCAATGCCT
GAGGCTGTCCAGTTAGCCATGTCCGAAGGTGTCGTAGATGATGTCGAGGA
GGACTGCTGATGTGTTATAGAGTGTGAGGGGGTCAATATATTGACGTTCC
TGGCACGGCCAGCATGTAATGCTTTATTTTTCTACTGCTGCGAATAAAAC
TGAATCATGGTGTTTCACCTGTGTA
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Coding sequence (CDS) from alignment at F-serratus_M_contig652:165244..166918+

>mRNA_F-serratus_M_contig652.17507.1 ID=mRNA_F-serratus_M_contig652.17507.1|Name=mRNA_F-serratus_M_contig652.17507.1|organism=Fucus serratus male|type=CDS|length=1080bp|location=Sequence derived from alignment at F-serratus_M_contig652:165244..166918+ (Fucus serratus male)
ATGGCTTCCTCTCAAACGGTGTTTCCCCTACCTGCCGACATCGGCAATGC
TGCAAAACAATACGAAGCTGGCGACAAGCAGGCTGTTCACCGCCTGCTGA
TAGTGGTGGCTTCCCACCACCCTGGACGTATTAGAGAGTTCCTCTGGGAT
GCCTCTCGTGCTGTCGGATCGCTATACTGCATACATGGTGACGATGCGCC
GGCTCCTCTGCCAAACATCAAGAGTCTGGGCGAGCGCAGAGAAGCCGCCA
GGGTGCATGCTGGACTCTGCGGCGTCTACAACAGCGGGAGTATCGCCGGC
GTTCAGCTGGAAGAAGTGCTGGCACGGGGAGGAGGGCCAACGGGCACGAA
GTTCCGGAATCAGATGGCTTCCTCTCAAACGGTGTTTCCCCTACCTGCCG
ACATCGGCAATGCTGCAAAACAATACGAAGCTGGCGACAAGCAGGCTGTT
CACCGCCTGCTGATAGTGGTGGCTTCCCACCACCCTGGACGTATTAGAGA
GTTCCTCTGGGATGCCTCTCGTGCTGTCGGATCGCTATACTGCATACATG
GTGACGATGCGCCGGCTCCTCTGCCAAACATCAAGAGTCTGGGCGAGCGC
AGAGAAGCCGCCAGGGTGCATGCTGGACTCTGCGGCGTCTACAACAGCGG
GAGTATCGCCGGCGTTCAGCTGGAAGAAGTGCTGGCACGGGGAGGAGGGC
CAACGGGCACGAAGTTCCGGAATCAGGCATGTTTCAACGCATCACGCGAC
CTCAACGTGAAGGGCGCAGGAGTACAAGTGTCTCGCAAGGAGTGCATGAC
CGAGGCTTGCCGTGCGCTTTTTCCCGGGGACGAGGCAATGCCTGAGGCTG
TCCAGCTAGCCATGTCAGAAGGCGTCGTAGATGATGTCGAGGAGGACGGT
TGAGCATGTTTCAACGCATCACGCGACCTCAACGTGAAGGGCGCAGGAGT
ACAAGTGTCTCGCAAGGAGTGCATGACCGAGGCTTGCCGTGCGCTTTTTC
CCGGGGACGAGGCAATGCCTGAGGCTGTCCAGCTAGCCATGTCAGAAGGC
GTCGTAGATGATGTCGAGGAGGACGGTTGA
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