mRNA_F-serratus_M_contig643.17356.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig643.17356.1
Unique NamemRNA_F-serratus_M_contig643.17356.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig643.17356.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig643contigF-serratus_M_contig643:271160..272153 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMitochodrial transcription termination factor
Ec32 orthologEc-22_001100.1
Exons2
Model size426
Cds size423
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931984.6737235-CDS-F-serratus_M_contig643:271160..2713971622931984.6737235-CDS-F-serratus_M_contig643:271160..271397Fucus serratus maleCDSF-serratus_M_contig643 271161..271397 -
1690964089.2224786-CDS-F-serratus_M_contig643:271160..2713971690964089.2224786-CDS-F-serratus_M_contig643:271160..271397Fucus serratus maleCDSF-serratus_M_contig643 271161..271397 -
1622931984.6890745-CDS-F-serratus_M_contig643:271967..2721531622931984.6890745-CDS-F-serratus_M_contig643:271967..272153Fucus serratus maleCDSF-serratus_M_contig643 271968..272153 -
1690964089.2324023-CDS-F-serratus_M_contig643:271967..2721531690964089.2324023-CDS-F-serratus_M_contig643:271967..272153Fucus serratus maleCDSF-serratus_M_contig643 271968..272153 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig643.17356.1prot_F-serratus_M_contig643.17356.1Fucus serratus malepolypeptideF-serratus_M_contig643 271161..272153 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig643.17356.1

>prot_F-serratus_M_contig643.17356.1 ID=prot_F-serratus_M_contig643.17356.1|Name=mRNA_F-serratus_M_contig643.17356.1|organism=Fucus serratus male|type=polypeptide|length=141bp
ANTLQAHHTIAQVLNLSVERTLAAKIRWFEETLGMDRAEVTRMVTTLPCL
FGYRIEENMELKIAWLQDALGASRATALGMMVKWPGIFTCSIERNLQPTL
DFFRGDLDGGLEEVRKAVASSPRLLGASIEKRMRPRAARML
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mRNA from alignment at F-serratus_M_contig643:271160..272153-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig643.17356.1 ID=mRNA_F-serratus_M_contig643.17356.1|Name=mRNA_F-serratus_M_contig643.17356.1|organism=Fucus serratus male|type=mRNA|length=994bp|location=Sequence derived from alignment at F-serratus_M_contig643:271160..272153- (Fucus serratus male)
GCTAACACTCTCCAGGCACACCACACCATCGCTCAGGTGCTGAACCTCAG
CGTGGAGCGAACGCTTGCCGCCAAGATTAGGTGGTTCGAGGAGACGTTGG
GAATGGATCGGGCTGAGGTCACGAGGATGGTCACTACCCTCCCCTGCCTC
TTCGGGTACAGGATCGAGGAGAATATGGAGCTCAAGGTACAGTGGCCATG
GATAGCGCGTGATGGCGCTCCCAGGAGGGGTATGATCGTGTCTCGATTGG
AGCTATAGACCTAAAGTCTTAAGCTATAGAAAACCCCACCGGATTTTTTT
TCGTTTTTTTTTTAAAGTCGCTATGTTACTGCGCTAGAGCTACTACGTAC
GCGGGGGCGCATCCTCCGCAGCAATTGAGCTATCGGTACTCTTTCCAAGC
GCGTGTTTGGTGCTCGGAGGAGCGTGATTGTCTGGGCCCGCGCGAGGGGT
GGGATTGTTTGTTAATAGCTACTCTCTCGTATTTACTTCACCGTGAGAAC
GAGTTTTGCTCACGATCGATTTTTATTGCTCGTTGCCCCCCCCCCCCCCC
CACTTCCAAAAAGCACAACAGTAAACAGAACAAGATGAAGCAGTTAATTA
AAGATACAACAAATCCTCCGCAACAAATGCAACATCTTTTGCAAAAGCCG
GGGATACCAAATCCCAGTGAGCCAAGTAACCTTGAGCGCGACAACCCCCC
CCCCCCCCCCCCATCGCCCGCAACTGCTACATCCTTACATCCTGAAAAAA
AAAAAGATTGCTTGGCTGCAAGACGCCCTGGGCGCCTCGAGAGCGACAGC
TTTGGGTATGATGGTCAAGTGGCCGGGAATTTTCACGTGCAGCATCGAGC
GCAACCTGCAACCGACGCTGGACTTCTTCCGCGGAGACCTCGACGGCGGT
CTCGAGGAGGTGAGGAAGGCCGTGGCCAGCAGCCCCCGACTCCTTGGGGC
GAGCATCGAGAAGAGGATGCGCCCGCGCGCCGCCAGGATGCTCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig643:271160..272153-

>mRNA_F-serratus_M_contig643.17356.1 ID=mRNA_F-serratus_M_contig643.17356.1|Name=mRNA_F-serratus_M_contig643.17356.1|organism=Fucus serratus male|type=CDS|length=846bp|location=Sequence derived from alignment at F-serratus_M_contig643:271160..272153- (Fucus serratus male)
GCTAACACTCTCCAGGCACACCACACCATCGCTCAGGTGCTGAACCTCAG
CGTGGAGCGAACGCTTGCCGCCAAGATTAGGTGGTTCGAGGAGACGTTGG
GAATGGATCGGGCTGAGGTCACGAGGATGGTCACTACCCTCCCCTGCCTC
TTCGGGTACAGGATCGAGGAGAATATGGAGCTCAAGGCTAACACTCTCCA
GGCACACCACACCATCGCTCAGGTGCTGAACCTCAGCGTGGAGCGAACGC
TTGCCGCCAAGATTAGGTGGTTCGAGGAGACGTTGGGAATGGATCGGGCT
GAGGTCACGAGGATGGTCACTACCCTCCCCTGCCTCTTCGGGTACAGGAT
CGAGGAGAATATGGAGCTCAAGATTGCTTGGCTGCAAGACGCCCTGGGCG
CCTCGAGAGCGACAGCTTTGGGTATGATGGTCAAGTGGCCGGGAATTTTC
ACGTGCAGCATCGAGCGCAACCTGCAACCGACGCTGGACTTCTTCCGCGG
AGACCTCGACGGCGGTCTCGAGGAGGTGAGGAAGGCCGTGGCCAGCAGCC
CCCGACTCCTTGGGGCGAGCATCGAGAAGAGGATGCGCCCGCGCGCCGCC
AGGATGCTCATTGCTTGGCTGCAAGACGCCCTGGGCGCCTCGAGAGCGAC
AGCTTTGGGTATGATGGTCAAGTGGCCGGGAATTTTCACGTGCAGCATCG
AGCGCAACCTGCAACCGACGCTGGACTTCTTCCGCGGAGACCTCGACGGC
GGTCTCGAGGAGGTGAGGAAGGCCGTGGCCAGCAGCCCCCGACTCCTTGG
GGCGAGCATCGAGAAGAGGATGCGCCCGCGCGCCGCCAGGATGCTC
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