mRNA_F-serratus_M_contig64.17311.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig64.17311.1
Unique NamemRNA_F-serratus_M_contig64.17311.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig64.17311.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig64contigF-serratus_M_contig64:342992..344896 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1905
Cds size1260
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig64.17311.1prot_F-serratus_M_contig64.17311.1Fucus serratus malepolypeptideF-serratus_M_contig64 343030..344289 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931973.5689716-UTR-F-serratus_M_contig64:342991..3430291622931973.5689716-UTR-F-serratus_M_contig64:342991..343029Fucus serratus maleUTRF-serratus_M_contig64 342992..343029 +
1690964083.6031451-UTR-F-serratus_M_contig64:342991..3430291690964083.6031451-UTR-F-serratus_M_contig64:342991..343029Fucus serratus maleUTRF-serratus_M_contig64 342992..343029 +
1622931973.6143763-UTR-F-serratus_M_contig64:344289..3448961622931973.6143763-UTR-F-serratus_M_contig64:344289..344896Fucus serratus maleUTRF-serratus_M_contig64 344290..344896 +
1690964083.6340394-UTR-F-serratus_M_contig64:344289..3448961690964083.6340394-UTR-F-serratus_M_contig64:344289..344896Fucus serratus maleUTRF-serratus_M_contig64 344290..344896 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931973.5933118-CDS-F-serratus_M_contig64:343029..3442891622931973.5933118-CDS-F-serratus_M_contig64:343029..344289Fucus serratus maleCDSF-serratus_M_contig64 343030..344289 +
1690964083.6235511-CDS-F-serratus_M_contig64:343029..3442891690964083.6235511-CDS-F-serratus_M_contig64:343029..344289Fucus serratus maleCDSF-serratus_M_contig64 343030..344289 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig64.17311.1

>prot_F-serratus_M_contig64.17311.1 ID=prot_F-serratus_M_contig64.17311.1|Name=mRNA_F-serratus_M_contig64.17311.1|organism=Fucus serratus male|type=polypeptide|length=420bp
MAEGNSQGRALLRILREATQTIDAPLDARQDTSTFQEFTTGTFPSALPTT
HVRGAAAGEQQEDAQPLPTVSYVSESPCPLPRPGASAAVPLRSSGADHLA
RLQGTPTSTVPTMTCQQRQQHHVQQQYQLDHPPPRGLAPAEAQRRYHQHQ
QQYHQHHHQYHHQYSHHQQQQEQQQQQYAPSPAPPTVTPRRIAAEQERFL
KKFLSIESPEGESRSSIFSPAPPLPPTPSLPTSAAMSTPAASESGGAGEG
NGRSSASRANDRGKGKGPRGGPTRGGGGSGGGTEDSATTSSTPKREPRKR
SASSGRRNTEASNREKDGRKGRGARSHNEVGSRESKKGWKGAGTRNGGGG
GGGGGGGGGLAGVDGRKCFHHRRPRLRHMRGRPSRILQILRISRFLRFRT
SPSAPTCLRETRASCWRRR*
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mRNA from alignment at F-serratus_M_contig64:342992..344896+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig64.17311.1 ID=mRNA_F-serratus_M_contig64.17311.1|Name=mRNA_F-serratus_M_contig64.17311.1|organism=Fucus serratus male|type=mRNA|length=1905bp|location=Sequence derived from alignment at F-serratus_M_contig64:342992..344896+ (Fucus serratus male)
GAAGATTTCCCGTTTGATCCTAGTTCAAAACACAAAGCATGGCGGAAGGG
AACAGCCAAGGCAGAGCGCTGCTAAGAATATTAAGAGAGGCGACGCAAAC
GATCGATGCTCCGTTGGACGCCCGGCAGGATACATCGACTTTCCAGGAGT
TCACGACGGGTACGTTTCCCTCAGCGTTGCCTACGACACACGTCAGAGGC
GCTGCTGCCGGCGAGCAGCAGGAAGATGCCCAGCCGCTCCCAACGGTGAG
TTATGTTAGTGAGTCGCCTTGTCCGCTTCCCCGACCTGGAGCTTCCGCCG
CAGTTCCGCTCCGTTCGTCGGGTGCAGATCACCTGGCGAGGCTTCAAGGA
ACTCCTACGTCAACTGTGCCGACGATGACTTGTCAACAACGGCAGCAGCA
TCATGTTCAACAACAGTATCAACTTGACCACCCGCCTCCGCGGGGTTTAG
CGCCAGCGGAGGCCCAGCGGCGGTACCACCAGCATCAGCAACAATACCAT
CAACATCACCATCAATATCACCATCAGTATAGTCACCATCAGCAGCAGCA
GGAGCAGCAGCAGCAGCAATACGCCCCTTCGCCTGCGCCACCCACAGTCA
CCCCGCGGCGTATAGCCGCCGAGCAGGAGCGGTTCCTGAAAAAATTTCTT
TCGATCGAGAGCCCCGAAGGCGAATCCAGGTCCTCGATATTTTCGCCAGC
CCCGCCTCTCCCCCCTACCCCGTCTCTGCCGACCTCGGCAGCGATGTCGA
CGCCGGCTGCCAGCGAAAGCGGAGGAGCCGGTGAGGGTAATGGCCGGAGC
AGTGCAAGTCGGGCAAACGATAGAGGAAAAGGTAAAGGTCCACGCGGCGG
GCCGACTCGTGGTGGAGGCGGGAGTGGTGGCGGTACCGAGGATAGCGCCA
CGACATCATCGACTCCTAAGCGAGAGCCGCGCAAGAGGTCGGCGAGCTCG
GGCCGCAGGAACACAGAGGCGAGCAACCGCGAGAAAGACGGACGCAAAGG
TCGAGGGGCCCGAAGCCACAACGAAGTCGGCAGCCGCGAGTCGAAGAAAG
GGTGGAAAGGCGCCGGGACAAGGAATGGTGGCGGCGGCGGCGGCGGCGGC
GGAGGAGGAGGGGGGCTCGCGGGGGTGGACGGTCGAAAGTGCTTTCACCA
TCGCCGCCCGCGACTCCGGCATATGCGTGGTCGTCCTTCCAGAATTCTCC
AGATCCTAAGAATATCCCGATTCCTTCGCTTTCGCACCTCTCCCTCAGCT
CCGACGTGTCTGCGGGAGACGAGGGCCTCGTGCTGGAGGAGACGGTGACC
AAATGTCGAGATGATATGGTGGAAGATGAGGTGTTACACACGCCACCTCC
GCCGCCGCAACTGGCGGAGAGATGCGCGAGGACAGAAGGGGAGGCCCGAA
GCGCCGCCAAGCGAGCAGAGGACGATATCAAAAGGATGCTGAGGCTGGGG
TGATGAATTGGCCGATGAAAAGCGTTTGAAACAAGGTACAAGGGTGTGTG
CGTGGTACAGGAGAAGTCAGTTGTCAATCCTGGTTGCCAATCCTGGTCTT
ATGCCTAACGACAGGTATTTTAGTCAACAGCTCTTGCTCTAGAGAGAAAA
AGCTTGCAGTAGGTAGAGATGGTGAACGCAGTCGTTTTATCATACAGGCG
GGGGGCTCCAACGTAGAAAGGAGATACAGACAGTTTGATTCCACTAGTGT
CGTTTTGGCGGTCGCCCTCCTGTTTTTGCCGTTGTGCAGCGCCGAAGGAT
TACATTTTCTCCGTCCGCGGCAGGACATGCAACACATTACCGGTTGTGCC
GTGTGTTGCCTTCTGCAGCACGAAAGAGCTACGAATAAAGCGTACGTTTC
TTTGCTGTTGTCTTTGATCTGTCTTTCTTGGGGGTCGTTTTTCGAGCTGG
CAGGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig64:342992..344896+

>mRNA_F-serratus_M_contig64.17311.1 ID=mRNA_F-serratus_M_contig64.17311.1|Name=mRNA_F-serratus_M_contig64.17311.1|organism=Fucus serratus male|type=CDS|length=2520bp|location=Sequence derived from alignment at F-serratus_M_contig64:342992..344896+ (Fucus serratus male)
ATGGCGGAAGGGAACAGCCAAGGCAGAGCGCTGCTAAGAATATTAAGAGA
GGCGACGCAAACGATCGATGCTCCGTTGGACGCCCGGCAGGATACATCGA
CTTTCCAGGAGTTCACGACGGGTACGTTTCCCTCAGCGTTGCCTACGACA
CACGTCAGAGGCGCTGCTGCCGGCGAGCAGCAGGAAGATGCCCAGCCGCT
CCCAACGGTGAGTTATGTTAGTGAGTCGCCTTGTCCGCTTCCCCGACCTG
GAGCTTCCGCCGCAGTTCCGCTCCGTTCGTCGGGTGCAGATCACCTGGCG
AGGCTTCAAGGAACTCCTACGTCAACTGTGCCGACGATGACTTGTCAACA
ACGGCAGCAGCATCATGTTCAACAACAGTATCAACTTGACCACCCGCCTC
CGCGGGGTTTAGCGCCAGCGGAGGCCCAGCGGCGGTACCACCAGCATCAG
CAACAATACCATCAACATCACCATCAATATCACCATCAGTATAGTCACCA
TCAGCAGCAGCAGGAGCAGCAGCAGCAGCAATACGCCCCTTCGCCTGCGC
CACCCACAGTCACCCCGCGGCGTATAGCCGCCGAGCAGGAGCGGTTCCTG
AAAAAATTTCTTTCGATCGAGAGCCCCGAAGGCGAATCCAGGTCCTCGAT
ATTTTCGCCAGCCCCGCCTCTCCCCCCTACCCCGTCTCTGCCGACCTCGG
CAGCGATGTCGACGCCGGCTGCCAGCGAAAGCGGAGGAGCCGGTGAGGGT
AATGGCCGGAGCAGTGCAAGTCGGGCAAACGATAGAGGAAAAGGTAAAGG
TCCACGCGGCGGGCCGACTCGTGGTGGAGGCGGGAGTGGTGGCGGTACCG
AGGATAGCGCCACGACATCATCGACTCCTAAGCGAGAGCCGCGCAAGAGG
TCGGCGAGCTCGGGCCGCAGGAACACAGAGGCGAGCAACCGCGAGAAAGA
CGGACGCAAAGGTCGAGGGGCCCGAAGCCACAACGAAGTCGGCAGCCGCG
AGTCGAAGAAAGGGTGGAAAGGCGCCGGGACAAGGAATGGTGGCGGCGGC
GGCGGCGGCGGCGGAGGAGGAGGGGGGCTCGCGGGGGTGGACGGTCGAAA
GTGCTTTCACCATCGCCGCCCGCGACTCCGGCATATGCGTGGTCGTCCTT
CCAGAATTCTCCAGATCCTAAGAATATCCCGATTCCTTCGCTTTCGCACC
TCTCCCTCAGCTCCGACGTGTCTGCGGGAGACGAGGGCCTCGTGCTGGAG
GAGACGGTGAATGGCGGAAGGGAACAGCCAAGGCAGAGCGCTGCTAAGAA
TATTAAGAGAGGCGACGCAAACGATCGATGCTCCGTTGGACGCCCGGCAG
GATACATCGACTTTCCAGGAGTTCACGACGGGTACGTTTCCCTCAGCGTT
GCCTACGACACACGTCAGAGGCGCTGCTGCCGGCGAGCAGCAGGAAGATG
CCCAGCCGCTCCCAACGGTGAGTTATGTTAGTGAGTCGCCTTGTCCGCTT
CCCCGACCTGGAGCTTCCGCCGCAGTTCCGCTCCGTTCGTCGGGTGCAGA
TCACCTGGCGAGGCTTCAAGGAACTCCTACGTCAACTGTGCCGACGATGA
CTTGTCAACAACGGCAGCAGCATCATGTTCAACAACAGTATCAACTTGAC
CACCCGCCTCCGCGGGGTTTAGCGCCAGCGGAGGCCCAGCGGCGGTACCA
CCAGCATCAGCAACAATACCATCAACATCACCATCAATATCACCATCAGT
ATAGTCACCATCAGCAGCAGCAGGAGCAGCAGCAGCAGCAATACGCCCCT
TCGCCTGCGCCACCCACAGTCACCCCGCGGCGTATAGCCGCCGAGCAGGA
GCGGTTCCTGAAAAAATTTCTTTCGATCGAGAGCCCCGAAGGCGAATCCA
GGTCCTCGATATTTTCGCCAGCCCCGCCTCTCCCCCCTACCCCGTCTCTG
CCGACCTCGGCAGCGATGTCGACGCCGGCTGCCAGCGAAAGCGGAGGAGC
CGGTGAGGGTAATGGCCGGAGCAGTGCAAGTCGGGCAAACGATAGAGGAA
AAGGTAAAGGTCCACGCGGCGGGCCGACTCGTGGTGGAGGCGGGAGTGGT
GGCGGTACCGAGGATAGCGCCACGACATCATCGACTCCTAAGCGAGAGCC
GCGCAAGAGGTCGGCGAGCTCGGGCCGCAGGAACACAGAGGCGAGCAACC
GCGAGAAAGACGGACGCAAAGGTCGAGGGGCCCGAAGCCACAACGAAGTC
GGCAGCCGCGAGTCGAAGAAAGGGTGGAAAGGCGCCGGGACAAGGAATGG
TGGCGGCGGCGGCGGCGGCGGCGGAGGAGGAGGGGGGCTCGCGGGGGTGG
ACGGTCGAAAGTGCTTTCACCATCGCCGCCCGCGACTCCGGCATATGCGT
GGTCGTCCTTCCAGAATTCTCCAGATCCTAAGAATATCCCGATTCCTTCG
CTTTCGCACCTCTCCCTCAGCTCCGACGTGTCTGCGGGAGACGAGGGCCT
CGTGCTGGAGGAGACGGTGA
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