mRNA_F-serratus_M_contig64.17304.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig64.17304.1
Unique NamemRNA_F-serratus_M_contig64.17304.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig64.17304.1 vs. uniprot
Match: D7G7E0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7E0_ECTSI)

HSP 1 Score: 170 bits (431), Expect = 7.740e-50
Identity = 87/145 (60.00%), Postives = 106/145 (73.10%), Query Frame = 2
Query:  176 MSRPEARAAAKTMYDHQIPEMNPDVLRQAMELGPAEKTATTHQKLVPDDSELVVSKAPRPLPMDRSRVPTTANEVEETKGLLTQTQLAEVLKRLVPPSEISSPELKQSVVGDFHISEDSAAILARYYRAPDVRMYDDVMTARWRW 610
            MSRP+A+AAAK MYD Q+P+MN D+LRQAM +GP  K   THQKLVPD SE+V SK PRPLP DR+R    + EV+  KGLLTQTQLA  L+R V     S P     ++ +FH+SE+ AA+L RY RAPD+RMY+DVMTARW W
Sbjct:    1 MSRPDAQAAAKKMYDQQVPDMNADILRQAMAMGPVGKAELTHQKLVPDASEMVTSKTPRPLPKDRTRAVAKSGEVDAKKGLLTQTQLAAFLERRVANGAGSPPPA--GLLEEFHVSEEDAAVLLRYCRAPDIRMYEDVMTARWHW 143          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig64.17304.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G7E0_ECTSI7.740e-5060.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig64contigF-serratus_M_contig64:252430..258784 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-04_003180.1
Exons4
Model size808
Cds size669
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig64.17304.1prot_F-serratus_M_contig64.17304.1Fucus serratus malepolypeptideF-serratus_M_contig64 252446..258661 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931975.2601163-UTR-F-serratus_M_contig64:252429..2524451622931975.2601163-UTR-F-serratus_M_contig64:252429..252445Fucus serratus maleUTRF-serratus_M_contig64 252430..252445 +
1690964084.4016805-UTR-F-serratus_M_contig64:252429..2524451690964084.4016805-UTR-F-serratus_M_contig64:252429..252445Fucus serratus maleUTRF-serratus_M_contig64 252430..252445 +
1622931975.335576-UTR-F-serratus_M_contig64:258661..2587841622931975.335576-UTR-F-serratus_M_contig64:258661..258784Fucus serratus maleUTRF-serratus_M_contig64 258662..258784 +
1690964084.4615023-UTR-F-serratus_M_contig64:258661..2587841690964084.4615023-UTR-F-serratus_M_contig64:258661..258784Fucus serratus maleUTRF-serratus_M_contig64 258662..258784 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931975.2748713-CDS-F-serratus_M_contig64:252445..2525961622931975.2748713-CDS-F-serratus_M_contig64:252445..252596Fucus serratus maleCDSF-serratus_M_contig64 252446..252596 +
1690964084.4125004-CDS-F-serratus_M_contig64:252445..2525961690964084.4125004-CDS-F-serratus_M_contig64:252445..252596Fucus serratus maleCDSF-serratus_M_contig64 252446..252596 +
1622931975.2885973-CDS-F-serratus_M_contig64:257470..2576071622931975.2885973-CDS-F-serratus_M_contig64:257470..257607Fucus serratus maleCDSF-serratus_M_contig64 257471..257607 +
1690964084.4232872-CDS-F-serratus_M_contig64:257470..2576071690964084.4232872-CDS-F-serratus_M_contig64:257470..257607Fucus serratus maleCDSF-serratus_M_contig64 257471..257607 +
1622931975.3038917-CDS-F-serratus_M_contig64:258065..2582141622931975.3038917-CDS-F-serratus_M_contig64:258065..258214Fucus serratus maleCDSF-serratus_M_contig64 258066..258214 +
1690964084.4320812-CDS-F-serratus_M_contig64:258065..2582141690964084.4320812-CDS-F-serratus_M_contig64:258065..258214Fucus serratus maleCDSF-serratus_M_contig64 258066..258214 +
1622931975.318002-CDS-F-serratus_M_contig64:258429..2586611622931975.318002-CDS-F-serratus_M_contig64:258429..258661Fucus serratus maleCDSF-serratus_M_contig64 258430..258661 +
1690964084.4408875-CDS-F-serratus_M_contig64:258429..2586611690964084.4408875-CDS-F-serratus_M_contig64:258429..258661Fucus serratus maleCDSF-serratus_M_contig64 258430..258661 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig64.17304.1

>prot_F-serratus_M_contig64.17304.1 ID=prot_F-serratus_M_contig64.17304.1|Name=mRNA_F-serratus_M_contig64.17304.1|organism=Fucus serratus male|type=polypeptide|length=223bp
MGNSASKTGANVSRVARAMTKADPKGKAPTAGTLRSSGEGDAVKNFKPTK
VVEMSRPEARAAAKTMYDHQIPEMNPDVLRQAMELGPAEKTATTHQKLVP
DDSELVVSKAPRPLPMDRSRVPTTANEVEETKGLLTQTQLAEVLKRLVPP
SEISSPELKQSVVGDFHISEDSAAILARYYRAPDVRMYDDVMTARWRWKS
TTDMTRKAVEILPQEARGVPKS*
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mRNA from alignment at F-serratus_M_contig64:252430..258784+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig64.17304.1 ID=mRNA_F-serratus_M_contig64.17304.1|Name=mRNA_F-serratus_M_contig64.17304.1|organism=Fucus serratus male|type=mRNA|length=6355bp|location=Sequence derived from alignment at F-serratus_M_contig64:252430..258784+ (Fucus serratus male)
GCAAAATCTCCTGGAGATGGGAAACTCTGCGAGTAAGACTGGAGCGAATG TCTCCCGGGTGGCACGAGCGATGACCAAAGCAGACCCAAAAGGAAAGGCT CCCACTGCAGGAACATTGCGTTCATCGGGAGAAGGAGATGCTGTCAAGAA TTTCAAGCCGACGAAAGGTATTCTAATATGTAGTCGGATCCAAGTAAGAG ATCGTCCACGTGGGAGCAGCTCGAGTTAGTCATCGAGTACAAACACGCAA TTCAAACGCCATGTGAACTCTGACTGGGACGTTCTCGCGGTGTTGTTTAC AGACGCTGGAGTCGTTCTAGAAACAAACCCGTACGTACAACTAAATATCA CGAACGGCAGCTCTATAGATCTACAGCATAATAGCACGAGCTCCATTTCA CGTACGGGTACTTATTTGTGTGTACATAACTCGTATCCGTGCTACAAAAC GTTAATGTACGGATAACAATAGCTCTATTTCTATACAGCCAGTGTGCAGT AGCTATAATCGTTCCACTACTGTGTTGGTCCTCGCAGAGCAGAGGTTTTG TCTTTGCAACCAATGATTCCACCTAACCGTTTTGACATTTTCCCCCCTGA CTGGGGGATGCTCAGAAGGTCTACATGCGGTTCAGATTTTTCTTTCAACA CCTTCTCAAGAGAACATTGGTGCATTTCTGCGGGACCTACGATAGTCAGC GCGAAAGCTAATAATTGCCTCAAACGGCACGCCCCTCCCCCCTCTCATTC GATGCGCAAGATATTAAAAAATACTCGCACACTCTGCAACAAATTTCAAC AGATTACTGTGCCTGGCATGTACCTGGTACGTACCAGGTACTCTGTGTCT GCAGCCCCACTTCTACTCCGAATGCCTACCTGTACAAATGTTCGTGCAGA CTCTTAACTGTGGTATAATCCGACCCACCACGTAATAATCCTGCTCGTCC AGCCAACGCCGACATTGCCCTCGATGGTTCTAGTTGAGTAATACTTCTCG CGCTCCTGGTGGGCTAGTCTCGGTCATGGAGATGAACGCCTCCGCTGCGG CACTCACGGCAAGTTTTGCTGCAACGGCCTCTGCTCTCCCGGTCGCGCAA ATGTTTGGGCGTACGTACGCTGGTTTTAGCTGATGAGAGCCTTGTTGTGG ACACTTGTACTCCACCAACACAACATTCATGCCTCCTAGAAAGCGCTCAC GAATGAACGATCCGTGTGGACCCTTGTACTCCATCAACGCAACACTCGCA CTTCCCAGAAAGCGCCGACTAATGAATGACCCGTGAGCTTCACATCGGCG CGGGATGAGCGAGTTCGATGAGAAGTTGTTGTCGAGGGCGCCGTGCCTTC CTTGCAGCGTCGAACTCTGGCTCTTAGAATCTTCCATGACCGCTGAATTG ACAATCCCACCCCAGGAACGAAGGAGACCAGGGAGAGGCTGGAGTGGAGT CGCCTAAACGGAAGCTGAGCTGCAGGCTGCGACTGATGCGATGCACGCAA CGTGGCAGCGCCTGAAAATTGACACAGGGATGCGCAGCTGCGGGGGGGCG TCAGGAAGGCATGTAACTGACTGAAGAGAGTGCCAAGTGCGGCAACCGTT CGTTTCTTCGAGCGCCACCTCGTTGAGGGAGAGAAGCAGCTGTGCATGGG AGACCAGCATTGGTTCTTCCAAAACATCAAATCGGTGCAGCTGGAGGAGG TGAAGAAAGGCGAATCGCAGTGCGTCCATGACGAGGAAAGGAGACTGCTG CGCGACAAAGGGCGTAACCGCGAGAGATCGATGCGATTTTTCCGCTCGCT GCTGAACGCTAAATCCAACATTCTCGATCCCGACATCCCGAAGAGGCTGC CGCAGCAACCAGTCGCAAGTGCCCTCGGGATCGGACCCACAAAGGAGATT GCCACAGCGATGGCGGCAATGGCAAAGGCGAAAGCGGTGGGGCCGGACGG CCTTTCCGCGGAATTGCTGAAACTCGGGCTTCAACAAGACCGGACCATCC TGCTGGAGTTCCACCGACTCACCACCCTCATCTGGCGCGAGGGGAAAGTC CACAGCAGTAGAAAGACGCGATCATTACCGTACTCCACAAGAAGGGCGAC AAGACGGAGTGCGAAAACTACCGCGGCATCTCGCTCGTGTCACCCGCGGA TAAGGATACTCCTTAACGTGGTTTGCCAGGAGACTTGGCGCTTAGTGTGA GGCGAAGGGAGGAGTAGTGCGGGTTTCAACCGGATCGCTCGACCTTGGAC ATGATGTTTTTGGTGCGCAGGCTGCAGAAAATGGGCGGAAGGCAGGAATG TCTCTCTTCATGTGTTTTATAGACCTCTAGAAGGCGTACGACATCGTTGA CCGCACCCTCCTGTGGCAGGTAAGTACTCACTCGCATCGGGGTACAACCG CAGATGATAGCAGTCATTCAACAATTCCACGATGGGATGAGAGCTTATGT GCGACCTGATGACGGTGTCTGTTCGGATTGGTTCGAGGCGGAACAAGGAC TACTGCAAGGATGCATGATATCCCCGCTGTTGTTCAACATCTTCTTCGCA GCCGTGCTGACCGTTGTCCTCCAAAGATTCAGTGACGATACGGTCATCCT CGCCGAGCCGACGTCGATGGGACCGGAGCCGGTTATGGACTTCGTTCGTC GTCCGGGAAGTAGAGCCCTCCCTCAAGACCCGAATGGTATAGGCCGGGGT AATCGAGGCCCTCCTGTATGACATGCACCCTTCGCCAGGAGCACAACGTC AAACTCCGCACCCTACACCACCGGGTCTTGCTTTGCATTATCGGGTCACA GCTCAAGAGACCAGACAATCGGATGACCTCGTACGACCGTGCCCTTGAGA TAACCCGGTGTGAGAGCATTGAGGCATTGTTGCGCACGATAAAAAAAAAT GTATGCGGGGGCGCTCATCCGAATGAGCGGCAGGCGGCTGCCAAAGCGAG TCGTGTTCGGAAACCTTGAGGGTGCAGCGCGGAGAGGACGGGGTGGGAAG GAGAAAGAGTGGACCGATTGCGTACAGAGCGACATCCGGGTGTTTAGCAT AGTGGCGGACTGGAAAGTAACGGCGTTGGAGGCTGAGGTGTGCGTTGAAA CGGTCACGGAGGTGGGGCGGAGGTTCATGGCCGCGTGGAGGAAGTAAGAG GTAGACGCGGCTAGATATCGCCAGGAGATGAGAAAGGCAACGAAACTGGA AAAGTTGTTATCGCACATGGAATCGTAGAATTTTGCGAAGCGACACCCAT AGGCCTAGCCGGCGAGTCGAAGGAATCGTTGTACGGACACGAGACAGACG GAGACTTGCGTAGCGCCTAGGCATGTAGATGTGTCACGTGATTTTTATAT TTATTTTCTCTCGTTAGTATTAACATATTAAATAGTAACAAGCAACGCGG GGAGGGGGGGGACGCTGCCATACTTTTTATTTTTTCCCTGTTCAGCAGAC CACGAGCGGGATTGGCCACCGTGTAAAGTTTTTTTTCGGGTTGGCAACCA ATGATTAATACGCTGAATGTGAAAAACAACTTATTAAAACAACAGACTAC TGCACAGCCGCATTTTTGTAAAACTGAGTGTGTTGAAAGGGAAGTGCTTG CTGTCCTCGCGTTTTGTGGAATCTACATGAGGCGAACCTAAAGATTGGGC GGTCTGTACCCACGACCACCTCCACATCGAGCCTCAATCTGACATACATG CAGCCTCGGATGATGACAAGCAATGCCCCGATTAGACCCGTCACGTATCA ACGCGGGAGTTTTGTGTTGTTTGTTTCACTGCCCGACGAAATTTGAAGCA GTGGTGGGCATCGTAGAGCCGGAGAGCTTGTAGATTTCGCATATTTTACT GTTAGACAAAAATACTTATTTTGGTGTTGCTGCTAAACAACTCGCCCTGC TTACTCTGACGGAACAAAAACAAAGAAAGCCCAACAACCGTCACAATATC AAGCAGAAGCCTTCCAGCGACACGCTAATCTCGCGCAGTAAGCTCTTGTT AGAACTATATAATTAGAGAGTTTTGTCCCTTGAATAAAAATAAAAATAAA AATGACGGGGCAACTACTGTTTGCGTTGAGTTAAACACGATCCGGGGACA GAAATTCCCCCCCCCAACGTTTTTTCAACGGCTATCTCGGGTACGGTAGG TCGGTAGGCCTACCGAACACCGTGATGAAACTCCCAACATCATCCCCCGT CTTCAGTAGGTCTTTGTACCTTCGACAGCAACGTGTGGAGGGTATGGACA GAGACGGGGGGGGGAGGGGGGGGCACCGGTCCTTGATTTCAAAGGTGGCG TTTCACTCTGTTTGATGCCTTTAGGTAGGAATGCTCGAGCATGAGAGGCC AAGCTACGGTAGTCCTCGCAAGCTGTCGAATCGTTCTTTCAGGGATCGCA CCAGGCAGTGATCAGTTTTGCTTAGCTTGGAACGTATACGTATGCCGCAC CAGACTCTTGACATCGTCGAGCAAAGCGAAACGGCAGGACGAGGCAGAGC TTCCGTCGATTCCCAGCAGCTCGAAAAGACCTCGGGGAGAGGTACTCGCT GCCCATCCCGTGGGGCTGCTTCCCGTCTTCGCTGGTCATGAGCTCCAGAG GGTTGCCGAAAACGACAGTCTTGATTGCACGCTTCGTCTTTTTTGTACAA ATGTAGCGAGGATATCGAAAAAACGTTTGACGAATCGAGAACCTCGACTA GAACGGGAATATCTGTTTTGATTTTGGCTTTCATTTTGCTGAAAAAGCTG CGTGCAATCTCGAAGTTGAAGACGACCAGGTTCCTATAAATGAAGGCCCA TTTTTCGGAACGTCTACCTCTCTATAGTAGTCAACAGGTGCTTCGTGAAA TGTTGGTGCCTAAACTTGCAGACCCGGTTTGGCTGCAGAAGAGCATCGTT TGACCCACCGTTACATCAAAAACTGCTCCCGCGAATCTCTTGAACAACCC ATCTGCTGAGGCGTTTCCAACAAGGCTGTCGCTTGTACCTAAGTAATATC AATACATTTCTGTACGTGTGGCGTTCGTTATCCGTTTGCAGTCGTGGAAA TGTCGAGACCCGAAGCTCGAGCCGCAGCCAAGACCATGTACGACCATCAG ATTCCCGAGATGAACCCAGATGTTCTGCGGCAGGCGATGGAGCTGGGGCC GGCAGAGAAGACGGCGACTACACACCAGGTTTGTTAAGTTCGAGGCGTGT TACGTGAGTGAAAATGTTCTTGTCCTGCCCCCCCCTTCCAAGAACGGCAG CATGACCCTATTCCTCGGAAGGAACAGGCATGTCGTGCAGAGCTAGATAC TTTATATTACTGCAAATAACAGCAAAATAAGATGGATTCGAAAGGGTGGG TGAGTGGGTATTTAGGCGCAATACGTTACCGCAACCGGTCAGCATGCCGG GAGAACGCCATATTTTTCAAGGGTGAAGGCGCTGAAGCACGGGGCTATCC TCGATCCCCGCGACCTTACCGCGCTGTACCAGACAGCGACGAAACATGCT CAAACTTCATACCAGCGAGTACGAAAGATCACCCATCGTAGTGTACCCTA GCTTACCGTGTTTCTAATCTCGTGCGTCCGATGGTCTCCCTGTCCTCCGA TTCCTCCTCTCGCGGGGCCATTCATCTGATCGGCAGAAACTCGTGCCTGA CGATTCCGAGCTAGTGGTCAGCAAGGCTCCACGTCCCCTGCCCATGGATC GCTCTAGGGTTCCAACCACGGCCAACGAGGTGGAAGAGACAAAGGGCTTG CTCACGCAGACGCAGCTCGCCGAGGTCTTGAAAAGGTAAAAAAAAATTAT GAGGGCGTGGTCACGGGATGGATGCTTTCGTGACGATGGAGACAAATTAC GAGATACTGTCGCGCTTCGTTTAAAGCATCAAAGGGATCGTCTCGAAAAG AGCCTTGGATGACGATGCCCCTTTCTCCCGATCTCGCCCCGTGCTATTAC TGTTATAACTTTTTCCGTTTCCCTTTTTTGGGGGGGGGGGGGGGTGGCAG GCTGGTTCCGCCGAGTGAAATATCTTCTCCGGAGCTGAAGCAGAGCGTGG TGGGCGATTTCCACATCTCCGAGGACAGTGCGGCGATTTTGGCGCGTTAC TACCGTGCGCCAGACGTTCGGATGTACGATGACGTCATGACGGCACGGTG GCGATGGAAGTCGACGACGGACATGACACGAAAAGCTGTAGAGATTTTGC CCCAAGAAGCAAGGGGAGTTCCAAAGTCTTGAGGCTTTTGTAGTAGAGGG GTGTTATAACATATGTGGCTCCATCCCGGAAAGACGGGAACCGGTGTCTC GTGTCTTACTTTTGCCGCGTCAGCGAGGGTACCGATCTGTCAGGGCGCGG TGTTT
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Coding sequence (CDS) from alignment at F-serratus_M_contig64:252430..258784+

>mRNA_F-serratus_M_contig64.17304.1 ID=mRNA_F-serratus_M_contig64.17304.1|Name=mRNA_F-serratus_M_contig64.17304.1|organism=Fucus serratus male|type=CDS|length=1338bp|location=Sequence derived from alignment at F-serratus_M_contig64:252430..258784+ (Fucus serratus male)
ATGGGAAACTCTGCGAGTAAGACTGGAGCGAATGTCTCCCGGGTGGCACG
AGCGATGACCAAAGCAGACCCAAAAGGAAAGGCTCCCACTGCAGGAACAT
TGCGTTCATCGGGAGAAGGAGATGCTGTCAAGAATTTCAAGCCGACGAAA
GATGGGAAACTCTGCGAGTAAGACTGGAGCGAATGTCTCCCGGGTGGCAC
GAGCGATGACCAAAGCAGACCCAAAAGGAAAGGCTCCCACTGCAGGAACA
TTGCGTTCATCGGGAGAAGGAGATGCTGTCAAGAATTTCAAGCCGACGAA
AGTCGTGGAAATGTCGAGACCCGAAGCTCGAGCCGCAGCCAAGACCATGT
ACGACCATCAGATTCCCGAGATGAACCCAGATGTTCTGCGGCAGGCGATG
GAGCTGGGGCCGGCAGAGAAGACGGCGACTACACACCAGTCGTGGAAATG
TCGAGACCCGAAGCTCGAGCCGCAGCCAAGACCATGTACGACCATCAGAT
TCCCGAGATGAACCCAGATGTTCTGCGGCAGGCGATGGAGCTGGGGCCGG
CAGAGAAGACGGCGACTACACACCAGAAACTCGTGCCTGACGATTCCGAG
CTAGTGGTCAGCAAGGCTCCACGTCCCCTGCCCATGGATCGCTCTAGGGT
TCCAACCACGGCCAACGAGGTGGAAGAGACAAAGGGCTTGCTCACGCAGA
CGCAGCTCGCCGAGGTCTTGAAAAGAAACTCGTGCCTGACGATTCCGAGC
TAGTGGTCAGCAAGGCTCCACGTCCCCTGCCCATGGATCGCTCTAGGGTT
CCAACCACGGCCAACGAGGTGGAAGAGACAAAGGGCTTGCTCACGCAGAC
GCAGCTCGCCGAGGTCTTGAAAAGGCTGGTTCCGCCGAGTGAAATATCTT
CTCCGGAGCTGAAGCAGAGCGTGGTGGGCGATTTCCACATCTCCGAGGAC
AGTGCGGCGATTTTGGCGCGTTACTACCGTGCGCCAGACGTTCGGATGTA
CGATGACGTCATGACGGCACGGTGGCGATGGAAGTCGACGACGGACATGA
CACGAAAAGCTGTAGAGATTTTGCCCCAAGAAGCAAGGGGAGTTCCAAAG
TCTTGAGCTGGTTCCGCCGAGTGAAATATCTTCTCCGGAGCTGAAGCAGA
GCGTGGTGGGCGATTTCCACATCTCCGAGGACAGTGCGGCGATTTTGGCG
CGTTACTACCGTGCGCCAGACGTTCGGATGTACGATGACGTCATGACGGC
ACGGTGGCGATGGAAGTCGACGACGGACATGACACGAAAAGCTGTAGAGA
TTTTGCCCCAAGAAGCAAGGGGAGTTCCAAAGTCTTGA
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