mRNA_F-serratus_M_contig64.17300.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig64.17300.1
Unique NamemRNA_F-serratus_M_contig64.17300.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig64.17300.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig64contigF-serratus_M_contig64:202444..202807 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size364
Cds size318
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931973.4837239-UTR-F-serratus_M_contig64:202443..2024891622931973.4837239-UTR-F-serratus_M_contig64:202443..202489Fucus serratus maleUTRF-serratus_M_contig64 202444..202489 +
1690964083.5723956-UTR-F-serratus_M_contig64:202443..2024891690964083.5723956-UTR-F-serratus_M_contig64:202443..202489Fucus serratus maleUTRF-serratus_M_contig64 202444..202489 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931973.505958-CDS-F-serratus_M_contig64:202489..2028071622931973.505958-CDS-F-serratus_M_contig64:202489..202807Fucus serratus maleCDSF-serratus_M_contig64 202490..202807 +
1690964083.5864656-CDS-F-serratus_M_contig64:202489..2028071690964083.5864656-CDS-F-serratus_M_contig64:202489..202807Fucus serratus maleCDSF-serratus_M_contig64 202490..202807 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig64.17300.1prot_F-serratus_M_contig64.17300.1Fucus serratus malepolypeptideF-serratus_M_contig64 202490..202807 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig64.17300.1

>prot_F-serratus_M_contig64.17300.1 ID=prot_F-serratus_M_contig64.17300.1|Name=mRNA_F-serratus_M_contig64.17300.1|organism=Fucus serratus male|type=polypeptide|length=106bp
MENIKRSGTEDSDGENGTKHPIDKAQKSPATKKSDELSSVNPAGTVESSF
RSQSQENGGTDADADADDAKRSEKPTVRGNGDGTGGAASGEGSQPKRQKV
EVNAN*
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mRNA from alignment at F-serratus_M_contig64:202444..202807+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig64.17300.1 ID=mRNA_F-serratus_M_contig64.17300.1|Name=mRNA_F-serratus_M_contig64.17300.1|organism=Fucus serratus male|type=mRNA|length=364bp|location=Sequence derived from alignment at F-serratus_M_contig64:202444..202807+ (Fucus serratus male)
TGTCCATTGAGTGTGCCTTTCGTGCCAAAGTGCATCGTGTGCAGCAATGG
AAAACATCAAGCGATCAGGAACAGAAGACTCCGACGGTGAAAATGGCACG
AAACATCCGATAGATAAAGCACAAAAGTCGCCAGCAACAAAAAAGAGCGA
CGAACTGAGCTCTGTAAATCCAGCAGGAACCGTCGAGAGCTCATTTCGAT
CTCAAAGCCAAGAGAACGGGGGCACTGATGCTGACGCCGACGCTGACGAT
GCGAAGCGTAGCGAAAAGCCGACCGTTCGGGGAAATGGTGACGGTACGGG
TGGCGCCGCCTCTGGCGAAGGATCACAACCGAAGCGGCAAAAAGTTGAGG
TGAATGCAAACTAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig64:202444..202807+

>mRNA_F-serratus_M_contig64.17300.1 ID=mRNA_F-serratus_M_contig64.17300.1|Name=mRNA_F-serratus_M_contig64.17300.1|organism=Fucus serratus male|type=CDS|length=636bp|location=Sequence derived from alignment at F-serratus_M_contig64:202444..202807+ (Fucus serratus male)
ATGGAAAACATCAAGCGATCAGGAACAGAAGACTCCGACGGTGAAAATGG
CACGAAACATCCGATAGATAAAGCACAAAAGTCGCCAGCAACAAAAAAGA
GCGACGAACTGAGCTCTGTAAATCCAGCAGGAACCGTCGAGAGCTCATTT
CGATCTCAAAGCCAAGAGAACGGGGGCACTGATGCTGACGCCGACGCTGA
CGATGCGAAGCGTAGCGAAAAGCCGACCGTTCGGGGAAATGGTGACGGTA
CGGGTGGCGCCGCCTCTGGCGAAGGATCACAACCGAAGCGGCAAAAAGTT
GAGGTGAATGCAAACTAAATGGAAAACATCAAGCGATCAGGAACAGAAGA
CTCCGACGGTGAAAATGGCACGAAACATCCGATAGATAAAGCACAAAAGT
CGCCAGCAACAAAAAAGAGCGACGAACTGAGCTCTGTAAATCCAGCAGGA
ACCGTCGAGAGCTCATTTCGATCTCAAAGCCAAGAGAACGGGGGCACTGA
TGCTGACGCCGACGCTGACGATGCGAAGCGTAGCGAAAAGCCGACCGTTC
GGGGAAATGGTGACGGTACGGGTGGCGCCGCCTCTGGCGAAGGATCACAA
CCGAAGCGGCAAAAAGTTGAGGTGAATGCAAACTAA
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