mRNA_F-serratus_M_contig639.17289.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig639.17289.1
Unique NamemRNA_F-serratus_M_contig639.17289.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig639.17289.1 vs. uniprot
Match: D7G0A8_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0A8_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 3.320e-19
Identity = 54/124 (43.55%), Postives = 76/124 (61.29%), Query Frame = 1 
Query:    7 TVIRNAYLGDKNFEAVIEEASEASEIPMNAALINVALACS-----ESGSPCNS-SVCVEGEFGVYCQCYERYNS--SGKTGELTCLDGNSTGINLSEKAAPPTTFYPSLLEGDLLVSLADDGAI 354
            TV+RNA LGD N+  V + AS A+EIP   +LINV + C       S SPC+  S C++G+ GVYCQCY R +S   G   E TC+ G+   +NL+  + P    YP++L+G+LL +L DD  +
Sbjct:  341 TVVRNAVLGDNNYFDVAKAASTANEIPTAHSLINVNVTCDGWMPFSSTSPCSEGSPCIDGDLGVYCQCYTRESSIAEGSPSE-TCVTGDPGLLNLTVLSEPADAVYPTMLDGELLATLNDDETV 463
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BLAST of mRNA_F-serratus_M_contig639.17289.1 vs. uniprot
Match: D7G0B0_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0B0_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 1.170e-18
Identity = 53/124 (42.74%), Postives = 76/124 (61.29%), Query Frame = 1 
Query:    7 TVIRNAYLGDKNFEAVIEEASEASEIPMNAALINVALACS-----ESGSPCNS-SVCVEGEFGVYCQCYERYNS--SGKTGELTCLDGNSTGINLSEKAAPPTTFYPSLLEGDLLVSLADDGAI 354
            TV+RNA LGD N+  V E ASEA +IP   +LI+V + C       S  PC+  S C++G+ GVYCQCY R +S   G   E TC+ G+   ++L+  + P    YP++L+GDLL++L DD  +
Sbjct:  691 TVVRNAVLGDNNYFDVAEAASEAGDIPTAHSLISVNVTCDGWMPFSSTPPCSEGSPCIDGDLGVYCQCYTRESSIAEGSPSE-TCVTGDPGLLSLTVLSEPADAVYPTMLDGDLLLTLNDDETV 813
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BLAST of mRNA_F-serratus_M_contig639.17289.1 vs. uniprot
Match: D7G5M2_ECTSI (Probable extracellular nuclease (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5M2_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 2.430e-17
Identity = 50/125 (40.00%), Postives = 76/125 (60.80%), Query Frame = 1 
Query:    1 ADTVIRNAYLGDKNFEAVIEEASEASEIPMNAALINVALACS-----ESGSPCNS-SVCVEGEFGVYCQCYERYNSSGK-TGELTCLDGNSTGINLSEKAAPPTTFYPSLLEGDLLVSLADDGAI 354
            + TV+RNA LGD N+  V E AS A+ IP   +LINV + C       S  PC+  S C++G+ GVYCQCY R +S  K +   TC+ G+   ++L+  + P    +P++L+G+LL++L DD  +
Sbjct:   73 SSTVVRNAVLGDYNYFDVAEAASTANVIPTAHSLINVNVTCDGWMPFSSTPPCSEGSPCIDGDLGVYCQCYTRESSIAKGSPSETCVTGDPGLLSLTVLSEPADAVFPTMLDGELLLTLNDDETV 197
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BLAST of mRNA_F-serratus_M_contig639.17289.1 vs. uniprot
Match: A0A6H5JRA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRA9_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 1.450e-15
Identity = 49/120 (40.83%), Postives = 71/120 (59.17%), Query Frame = 1 
Query:    7 TVIRNAYLGDKNFEAVIEEASEASEIPMNAALINVALACS-----ESGSPCNS-SVCVEGEFGVYCQCYERYNS--SGKTGELTCLDGNSTGINLSEKAAPPTTFYPSLLEGDLLVSLAD 342
            T +RNA LGD N+  V + AS A+EIP    L+NV + C       S  PC+  S C++G+ GVYCQCY R +S   G   E TC+ G+   +NL+  + P    +P+ L+G+LL++L D
Sbjct:  778 TTVRNAVLGDNNYFDVAKAASTANEIPTAEPLMNVDVTCDGWMRFSSTPPCSEGSPCIDGDLGVYCQCYTRESSIAEGSPAE-TCVTGDPGLLNLTVLSEPADAVFPTKLDGELLLTLND 896
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BLAST of mRNA_F-serratus_M_contig639.17289.1 vs. uniprot
Match: D7FXY9_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXY9_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 1.690e-14
Identity = 49/116 (42.24%), Postives = 69/116 (59.48%), Query Frame = 1 
Query:    7 TVIRNAYLGDKNFEAVIEEASEASEIPMNAALINVALACSESG--SPCNS-SVCVEGEFGVYCQCYERYNSSGKTGELTCLDGNSTGINLS--EKAAPPTTFYPSLLEGDLLVSLA 339
            TVIRNA LG+ N++ + EEASE  ++P   + IN+ L C+ S   SPC   S C+EG+ GVYC+ Y+  +    T E  C  G+   + L+  +      TFYPSLLE +L +SLA
Sbjct:  601 TVIRNAMLGEMNYKTIAEEASEMLQLPSADSFINLNLTCNSSSAVSPCGEGSWCLEGDLGVYCEHYQLRS----TMEEVCASGDVDALTLTLIQDTESQPTFYPSLLERELQLSLA 712
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BLAST of mRNA_F-serratus_M_contig639.17289.1 vs. uniprot
Match: A0A6H5K4A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4A5_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 6.970e-13
Identity = 48/119 (40.34%), Postives = 67/119 (56.30%), Query Frame = 1 
Query:    7 TVIRNAYLGDKNFEAVIEEASEASEIPMNAALINVALACSESG-SPCNS-SVCVEGEFGVYCQCYERYNSSGKTGELTCLDGNSTGINLS--EKAAPPTTFYPSLLEGDLLVSLADDGA 351
            TVIRNA LG K +E + ++AS+  ++P     IN+ L C  S  SPC   S C+EG+ GVYC+ Y+  +    T E  C  G+   + L+  E      TFYPSL+E +L +SLA   A
Sbjct:  786 TVIRNAVLGVKTYENIADDASDMLQLPSADRFINLNLTCDSSAVSPCGEGSWCLEGDLGVYCERYQLRS----TLEEVCASGDVDALTLTLIEDTESQRTFYPSLIERELQLSLAASNA 900
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BLAST of mRNA_F-serratus_M_contig639.17289.1 vs. uniprot
Match: A0A6H5JH31_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH31_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 6.630e-10
Identity = 41/119 (34.45%), Postives = 69/119 (57.98%), Query Frame = 1 
Query:   13 IRNAYLGDKNFEAVIEEASEASEIPMNAALINVALACS-----ESGSPCNS-SVCVEGEFGVYCQCYERYNS--SGKTGELTCLDGNSTGINLSEKAAPPTTFYPSLLEGDLLVSLADD 345
            +++ +    +F+ V + AS A+EIP   +L+NV + C       S  PC+  S C++G+ GVYCQCY R +S   G   E TC+ G+   ++L+  + P    +P++L G+LL++L  D
Sbjct:  107 LKSLFTESSDFD-VAKAASTANEIPTAHSLMNVNVTCDGWMRFSSTPPCSEGSPCIDGDLGVYCQCYTRESSIAEGSPSE-TCVTGDPGLLDLTVLSTPADAVFPTMLAGELLLTLNGD 223
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig639.17289.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7G0A8_ECTSI3.320e-1943.55Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
D7G0B0_ECTSI1.170e-1842.74Adhesin-like protein n=1 Tax=Ectocarpus siliculosu... [more]
D7G5M2_ECTSI2.430e-1740.00Probable extracellular nuclease (ISS) n=1 Tax=Ecto... [more]
A0A6H5JRA9_9PHAE1.450e-1540.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXY9_ECTSI1.690e-1442.24Adhesin-like protein n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5K4A5_9PHAE6.970e-1340.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JH31_9PHAE6.630e-1034.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig639contigF-serratus_M_contig639:4020..5656 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size449
Cds size447
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig639.17289.1prot_F-serratus_M_contig639.17289.1Fucus serratus malepolypeptideF-serratus_M_contig639 4022..5656 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931971.7872174-CDS-F-serratus_M_contig639:4021..40811622931971.7872174-CDS-F-serratus_M_contig639:4021..4081Fucus serratus maleCDSF-serratus_M_contig639 4022..4081 -
1690964082.7528255-CDS-F-serratus_M_contig639:4021..40811690964082.7528255-CDS-F-serratus_M_contig639:4021..4081Fucus serratus maleCDSF-serratus_M_contig639 4022..4081 -
1622931971.8132384-CDS-F-serratus_M_contig639:4095..42511622931971.8132384-CDS-F-serratus_M_contig639:4095..4251Fucus serratus maleCDSF-serratus_M_contig639 4096..4251 -
1690964082.7657561-CDS-F-serratus_M_contig639:4095..42511690964082.7657561-CDS-F-serratus_M_contig639:4095..4251Fucus serratus maleCDSF-serratus_M_contig639 4096..4251 -
1622931971.8347857-CDS-F-serratus_M_contig639:4863..50511622931971.8347857-CDS-F-serratus_M_contig639:4863..5051Fucus serratus maleCDSF-serratus_M_contig639 4864..5051 -
1690964082.7782907-CDS-F-serratus_M_contig639:4863..50511690964082.7782907-CDS-F-serratus_M_contig639:4863..5051Fucus serratus maleCDSF-serratus_M_contig639 4864..5051 -
1622931971.8764806-CDS-F-serratus_M_contig639:5613..56561622931971.8764806-CDS-F-serratus_M_contig639:5613..5656Fucus serratus maleCDSF-serratus_M_contig639 5614..5656 -
1690964082.797315-CDS-F-serratus_M_contig639:5613..56561690964082.797315-CDS-F-serratus_M_contig639:5613..5656Fucus serratus maleCDSF-serratus_M_contig639 5614..5656 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig639.17289.1

>prot_F-serratus_M_contig639.17289.1 ID=prot_F-serratus_M_contig639.17289.1|Name=mRNA_F-serratus_M_contig639.17289.1|organism=Fucus serratus male|type=polypeptide|length=149bp
ADTVIRNAYLGDKNFEAVIEEASEASEIPMNAALINVALACSESGSPCNS
SVCVEGEFGVYCQCYERYNSSGKTGELTCLDGNSTGINLSEKAAPPTTFY
PSLLEGDLLVSLADDGAILSSTTASSMTTASGGVVWMMSEESSSWTMFP
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mRNA from alignment at F-serratus_M_contig639:4020..5656-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig639.17289.1 ID=mRNA_F-serratus_M_contig639.17289.1|Name=mRNA_F-serratus_M_contig639.17289.1|organism=Fucus serratus male|type=mRNA|length=1637bp|location=Sequence derived from alignment at F-serratus_M_contig639:4020..5656- (Fucus serratus male)
GCCGACACCGTGATCAGGAACGCCTACCTTGGAGACAAAAACTGTGAGAG
AAAAAGAGCTCACCGGTTGGAAACACATGTGCGAGTCAGCCGTGCAGTAA
TTTTGGTTCACTCAATCACGCCCGTTAGGGCTCCAGGGACAGGTTTTGCA
TCTCAACCAAAAGAGACACGGGAGTTCATTCATACCTGGTGATTTGAAAG
ATGCGCGTGCATGCAGCGCGCTTAGGTTGGTCGCGGTTCATGCGTCCTTG
ATGGCTGTGTCACTATAATTTGCCCGCTTTCCTTTCTATGAACATACCCC
CCTTTCTGTTGAAGTGGATCGCTCGCCTTCGTCTCAGGTGCTGTGAGCGA
GATACTACCTCACCCGCCTACCAACCACATTACCTCGCACGCCGCACATG
CTGTAGGCAACGTCGCCACCTCCCGTTACCCCTGTCACTTGGCACAAACC
GTGTTACCTGTGCCTGTCATCCCCTCCGCTAAACCCGCATAGTTTCACGT
TTGGAAAACAGCCCTAAGAGGTGTGCTTACTCATGAACGAGAGAAAATGG
TAAGCTTGCATTCCTTTTCCCCACAACTCCCCTTACCCGCTATCATCGTT
GATAGTTGAAGCAGTCATCGAGGAAGCGTCGGAAGCATCGGAAATTCCCA
TGAACGCCGCTCTTATTAATGTCGCCCTAGCCTGCTCGGAGAGCGGGAGT
CCTTGCAATAGTTCGGTTTGCGTCGAGGGAGAGTTCGGGGTCTACTGCCA
ATGCTACGAACGATACAACAGTTCAGGAAAAACGGGAGAGCTGGTGAGTC
GGCGCTCGAGGTCTCACCTTAGCGCGACAGCTTATGCTGTACCTAAGAAA
CGCAGAGAAGTAAGTCAGACTAAAGCACCTTCAAGCTATGGCGGTGCAAC
AGGCGTCAGGCTTATAACCCAAAAGCGAATTCGATTCAAGTTTCACAAGT
TTGTTCACTTACTCGTGGCGACGGAATTAGAGATATTTTCGTCGTCACAG
TCACCAAGGTAAGAATCTAAACGGCTTAAATATATAGTGATACATTGGTG
ATCCACTCGCTGTACTCCTCGTCTGCTCGTATCTCGGCCCTCTCGTTGTG
ACCACTCCTGCTCTGCTGAGGCTGTCTTTCAGACCTTATTTGCACTTCTT
TATCGACGTAAACTGTAGGCTTCCTCTTCCTACGCACAGCAATATGCTGT
AATATTCCTTCCTATCGGCGCAGTCCCCATTCCTACCCTAACATCTTAGC
ACCTTATTGTCAAACCCTTTGGCTCCGTATGCACGTACTCCAACGATAAT
TCCGCAGCTTTTCTCCCTACTCACCGTCATAGTGTTGTCGGTGCCGCTCC
ATTTAGTAACCTGACAACTTGGCGCCTCGTCCTCTAACCCTTGTGTACCG
CACAGACGTGTTTGGACGGGAATTCCACAGGAATTAACTTGTCAGAAAAG
GCGGCTCCGCCCACCACCTTCTATCCCAGCCTTTTGGAAGGCGATCTGTT
GGTGAGCCTTGCCGACGATGGTGCGATCTTGTCTTCAACTACGGCTTCAT
CGATGACAACGATGTCGAGTCACGTGCGTCGGGCGGAGTGGTGTGGATGA
TGTCCGAAGAGTCTAGCTCTTGGACAATGTTCCCTTC
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Coding sequence (CDS) from alignment at F-serratus_M_contig639:4020..5656-

>mRNA_F-serratus_M_contig639.17289.1 ID=mRNA_F-serratus_M_contig639.17289.1|Name=mRNA_F-serratus_M_contig639.17289.1|organism=Fucus serratus male|type=CDS|length=894bp|location=Sequence derived from alignment at F-serratus_M_contig639:4020..5656- (Fucus serratus male)
GCCGACACCGTGATCAGGAACGCCTACCTTGGAGACAAAAACTGCCGACA
CCGTGATCAGGAACGCCTACCTTGGAGACAAAAACTTTGAAGCAGTCATC
GAGGAAGCGTCGGAAGCATCGGAAATTCCCATGAACGCCGCTCTTATTAA
TGTCGCCCTAGCCTGCTCGGAGAGCGGGAGTCCTTGCAATAGTTCGGTTT
GCGTCGAGGGAGAGTTCGGGGTCTACTGCCAATGCTACGAACGATACAAC
AGTTCAGGAAAAACGGGAGAGCTGTTGAAGCAGTCATCGAGGAAGCGTCG
GAAGCATCGGAAATTCCCATGAACGCCGCTCTTATTAATGTCGCCCTAGC
CTGCTCGGAGAGCGGGAGTCCTTGCAATAGTTCGGTTTGCGTCGAGGGAG
AGTTCGGGGTCTACTGCCAATGCTACGAACGATACAACAGTTCAGGAAAA
ACGGGAGAGCTGACGTGTTTGGACGGGAATTCCACAGGAATTAACTTGTC
AGAAAAGGCGGCTCCGCCCACCACCTTCTATCCCAGCCTTTTGGAAGGCG
ATCTGTTGGTGAGCCTTGCCGACGATGGTGCGATCTTGTCTTCAACTACG
GCTTCATCGATGACAACGACGTGTTTGGACGGGAATTCCACAGGAATTAA
CTTGTCAGAAAAGGCGGCTCCGCCCACCACCTTCTATCCCAGCCTTTTGG
AAGGCGATCTGTTGGTGAGCCTTGCCGACGATGGTGCGATCTTGTCTTCA
ACTACGGCTTCATCGATGACAACGGCGTCGGGCGGAGTGGTGTGGATGAT
GTCCGAAGAGTCTAGCTCTTGGACAATGTTCCCTGCGTCGGGCGGAGTGG
TGTGGATGATGTCCGAAGAGTCTAGCTCTTGGACAATGTTCCCT
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