mRNA_F-serratus_M_contig636.17265.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig636.17265.1
Unique NamemRNA_F-serratus_M_contig636.17265.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig636.17265.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig636contigF-serratus_M_contig636:284167..285198 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1032
Cds size549
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig636.17265.1prot_F-serratus_M_contig636.17265.1Fucus serratus malepolypeptideF-serratus_M_contig636 284185..284733 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931966.1073246-UTR-F-serratus_M_contig636:284166..2841841622931966.1073246-UTR-F-serratus_M_contig636:284166..284184Fucus serratus maleUTRF-serratus_M_contig636 284167..284184 +
1690964079.9913044-UTR-F-serratus_M_contig636:284166..2841841690964079.9913044-UTR-F-serratus_M_contig636:284166..284184Fucus serratus maleUTRF-serratus_M_contig636 284167..284184 +
1622931966.142545-UTR-F-serratus_M_contig636:284733..2851981622931966.142545-UTR-F-serratus_M_contig636:284733..285198Fucus serratus maleUTRF-serratus_M_contig636 284734..285198 +
1690964080.014489-UTR-F-serratus_M_contig636:284733..2851981690964080.014489-UTR-F-serratus_M_contig636:284733..285198Fucus serratus maleUTRF-serratus_M_contig636 284734..285198 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931966.127268-CDS-F-serratus_M_contig636:284184..2847331622931966.127268-CDS-F-serratus_M_contig636:284184..284733Fucus serratus maleCDSF-serratus_M_contig636 284185..284733 +
1690964080.0030258-CDS-F-serratus_M_contig636:284184..2847331690964080.0030258-CDS-F-serratus_M_contig636:284184..284733Fucus serratus maleCDSF-serratus_M_contig636 284185..284733 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig636.17265.1

>prot_F-serratus_M_contig636.17265.1 ID=prot_F-serratus_M_contig636.17265.1|Name=mRNA_F-serratus_M_contig636.17265.1|organism=Fucus serratus male|type=polypeptide|length=183bp
MHREIPIVYQAFLMVLEPGVHSYAVPLRPPSQRLAGGRSSVQRRAPRGRK
EFRPIPSSSSQKQKRLYPHRSYPRFRGPKGRRAWPTIPVREAPLSQTVPR
TNRETAVVPLGTMLRVVDLQAPRSSGDHLFLCRTEHQWPGRTAERILFPT
ARVREASLLVLEATESKDVGHLPPPPAAAAAS*
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mRNA from alignment at F-serratus_M_contig636:284167..285198+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig636.17265.1 ID=mRNA_F-serratus_M_contig636.17265.1|Name=mRNA_F-serratus_M_contig636.17265.1|organism=Fucus serratus male|type=mRNA|length=1032bp|location=Sequence derived from alignment at F-serratus_M_contig636:284167..285198+ (Fucus serratus male)
CGCCATCCAGCGGGTCCGATGCATCGGGAGATCCCCATCGTATATCAGGC
GTTTCTGATGGTTCTGGAACCCGGAGTGCACTCGTACGCTGTCCCCCTCC
GGCCTCCGAGTCAGCGCCTGGCGGGTGGAAGGAGCTCGGTGCAGCGCCGA
GCGCCCCGGGGAAGGAAAGAGTTTCGCCCAATTCCGAGCTCCTCTTCCCA
GAAACAGAAACGCCTCTATCCCCATCGCAGCTACCCGCGGTTTCGAGGGC
CGAAGGGTCGTCGCGCGTGGCCGACGATCCCGGTGCGCGAAGCTCCCCTG
TCCCAAACTGTTCCTCGAACCAATCGGGAAACGGCGGTGGTACCACTTGG
GACGATGTTAAGGGTGGTCGATCTTCAGGCCCCACGTTCATCTGGTGATC
ACCTGTTCCTCTGCCGGACGGAACATCAATGGCCGGGGCGCACAGCTGAG
CGTATTCTTTTCCCCACGGCTCGGGTTCGTGAGGCTTCTCTGCTTGTTCT
GGAAGCCACAGAGTCGAAGGATGTTGGGCATCTCCCTCCACCCCCCGCTG
CTGCTGCGGCCAGCTGAAGCCATCAAAATTATAACCTTCTCTATCATCAT
TCGAAGCAATACCTCCGCTAGCGCCGACGCCATCGCCATCTGTGTACAAA
CCCCTCTCCACCCCGCCATCGTAACCGCTGCCTCCTGCATCAATACTCCT
GACACCGTTCACCGCAGCTGTTGCTACCCCCCCGGCGAACTCGCCGTGGT
CGCCATCCACATACCCAGGCTTTCCACCGCCGCCTCCCTCTATTGAAACC
CCTTGAGCCAAGAAAGCGTCTTCCGTGCCCGCGTCAACATCAAGCGGATG
ACGACCTCCAATCTCATCAGTCGAAAAGGAGGAGGAGGCGTTTTCTTCGG
GGGAGGCGAGAGCTCCAGGGGCGTCTCGGGACATCCAGTCCCGACCGTCG
CCGCCCTCGGCGTCCACCTCGTCTGCGAGCTCCCAGAGAGGCGTGTCCAG
GGCGGGGTCCTCGTCGTCCGCGTGAACGAAGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig636:284167..285198+

>mRNA_F-serratus_M_contig636.17265.1 ID=mRNA_F-serratus_M_contig636.17265.1|Name=mRNA_F-serratus_M_contig636.17265.1|organism=Fucus serratus male|type=CDS|length=1098bp|location=Sequence derived from alignment at F-serratus_M_contig636:284167..285198+ (Fucus serratus male)
ATGCATCGGGAGATCCCCATCGTATATCAGGCGTTTCTGATGGTTCTGGA
ACCCGGAGTGCACTCGTACGCTGTCCCCCTCCGGCCTCCGAGTCAGCGCC
TGGCGGGTGGAAGGAGCTCGGTGCAGCGCCGAGCGCCCCGGGGAAGGAAA
GAGTTTCGCCCAATTCCGAGCTCCTCTTCCCAGAAACAGAAACGCCTCTA
TCCCCATCGCAGCTACCCGCGGTTTCGAGGGCCGAAGGGTCGTCGCGCGT
GGCCGACGATCCCGGTGCGCGAAGCTCCCCTGTCCCAAACTGTTCCTCGA
ACCAATCGGGAAACGGCGGTGGTACCACTTGGGACGATGTTAAGGGTGGT
CGATCTTCAGGCCCCACGTTCATCTGGTGATCACCTGTTCCTCTGCCGGA
CGGAACATCAATGGCCGGGGCGCACAGCTGAGCGTATTCTTTTCCCCACG
GCTCGGGTTCGTGAGGCTTCTCTGCTTGTTCTGGAAGCCACAGAGTCGAA
GGATGTTGGGCATCTCCCTCCACCCCCCGCTGCTGCTGCGGCCAGCTGAA
TGCATCGGGAGATCCCCATCGTATATCAGGCGTTTCTGATGGTTCTGGAA
CCCGGAGTGCACTCGTACGCTGTCCCCCTCCGGCCTCCGAGTCAGCGCCT
GGCGGGTGGAAGGAGCTCGGTGCAGCGCCGAGCGCCCCGGGGAAGGAAAG
AGTTTCGCCCAATTCCGAGCTCCTCTTCCCAGAAACAGAAACGCCTCTAT
CCCCATCGCAGCTACCCGCGGTTTCGAGGGCCGAAGGGTCGTCGCGCGTG
GCCGACGATCCCGGTGCGCGAAGCTCCCCTGTCCCAAACTGTTCCTCGAA
CCAATCGGGAAACGGCGGTGGTACCACTTGGGACGATGTTAAGGGTGGTC
GATCTTCAGGCCCCACGTTCATCTGGTGATCACCTGTTCCTCTGCCGGAC
GGAACATCAATGGCCGGGGCGCACAGCTGAGCGTATTCTTTTCCCCACGG
CTCGGGTTCGTGAGGCTTCTCTGCTTGTTCTGGAAGCCACAGAGTCGAAG
GATGTTGGGCATCTCCCTCCACCCCCCGCTGCTGCTGCGGCCAGCTGA
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