mRNA_F-serratus_M_contig636.17258.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig636.17258.1
Unique NamemRNA_F-serratus_M_contig636.17258.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig636.17258.1 vs. uniprot
Match: A0A6H5KX60_9PHAE (MAGE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX60_9PHAE)

HSP 1 Score: 302 bits (773), Expect = 3.080e-94
Identity = 156/280 (55.71%), Postives = 206/280 (73.57%), Query Frame = 2
Query:  161 FTNSQGVARAKVANAAAKPSKGLLSEAKDERKGNELSSEERADLIKSMMRFLVMKGLNHDPATKKEMMDMVLGKTYRGKGVLRFILSKAAKKLKDTLGLRIKTLAEHSPYYVKDTYYVINALNHEDHAADILKGCGQAARGLLTVVLCIIYCSADKLVTEDDLFKKLHDQVDARIPAKASTSGRGAAKSKTRAHVEGLGDVHDVLATLVKQHYLMKKSVTKPTADCGTDIIPGYAMGARGALEVGNLQIVTLMAETMGETVDPSALVELEEEGSSQSLSQ 1000
            F+ SQ  AR+++  +A  PSK +  E KD++KGNELS   + DLIK MMRFL+MKGLNH+P T+KE+MD VLG+ YR  GVL+FIL+KA +KL+  +G ++KT     P++VKDT+YV+N LN+E H  ++L+G GQA RGLL +VL +I+CS+DK V E+ LFKKLHD VD R+P KA        K+K R HV+GLGDVH+ LA   KQHYL+KK V KPTAD GT+ IP Y+MG R  LE+G+ Q+V LMA+ MG+++DPS L+ LEE+  SQ LSQ
Sbjct:  133 FSESQTSARSQMVKSAKTPSKEVQIEEKDQKKGNELSDLAKKDLIKKMMRFLLMKGLNHEPLTRKEVMDNVLGEKYRKAGVLKFILTKADEKLQQGMGFKVKTPLPDKPWFVKDTFYVVNVLNNEQHFKEVLRGKGQAGRGLLVLVLSVIFCSSDKSVAENQLFKKLHDHVDERVPEKAWNGSNP--KNKVRVHVDGLGDVHEHLAMFTKQHYLLKKMVDKPTADGGTESIPHYSMGPRSVLEIGHRQLVELMAKVMGQSIDPSDLLGLEEQ-ESQGLSQ 409          
BLAST of mRNA_F-serratus_M_contig636.17258.1 vs. uniprot
Match: D8LSU2_ECTSI (MAGE domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSU2_ECTSI)

HSP 1 Score: 293 bits (749), Expect = 1.230e-92
Identity = 151/269 (56.13%), Postives = 198/269 (73.61%), Query Frame = 2
Query:  194 VANAAAKPSKGLLSEAKDERKGNELSSEERADLIKSMMRFLVMKGLNHDPATKKEMMDMVLGKTYRGKGVLRFILSKAAKKLKDTLGLRIKTLAEHSPYYVKDTYYVINALNHEDHAADILKGCGQAARGLLTVVLCIIYCSADKLVTEDDLFKKLHDQVDARIPAKASTSGRGAAKSKTRAHVEGLGDVHDVLATLVKQHYLMKKSVTKPTADCGTDIIPGYAMGARGALEVGNLQIVTLMAETMGETVDPSALVELEEEGSSQSLSQ 1000
            +  +A  PSK +  E KD++KGNELS   + DL+K MMRFL+MKGLNH+P T+KE+MD VLG+ YR  GVL+FIL+KA +KL+  +G +IKT     P++VKDT+YV+N LN+E H  ++L+G GQA RGLL +VL I++CS+DK V E+ LFKKLHD VD R+P KA        K+K R HV+GLGDVH+ LA   KQHYL+KK V KPTAD GT+ IP Y+MG R  LE+G+ Q+V LMA+ MG+++DPS L+ LEE+  SQ LSQ
Sbjct:    1 MVKSAKTPSKEVQIEEKDQKKGNELSDLAKKDLVKKMMRFLLMKGLNHEPLTRKEVMDNVLGEKYRKAGVLKFILNKADEKLQQGMGFKIKTPLPDKPWFVKDTFYVVNVLNNEQHFKEVLRGKGQAGRGLLVLVLSIVFCSSDKSVAENQLFKKLHDHVDKRVPEKAWNGNNP--KNKVRVHVDGLGDVHEHLAMFAKQHYLLKKMVDKPTADGGTESIPHYSMGPRSVLEIGHRQLVELMAKVMGQSMDPSDLLGLEEQ-ESQGLSQ 266          
BLAST of mRNA_F-serratus_M_contig636.17258.1 vs. uniprot
Match: A0A7S2WVH9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WVH9_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 1.100e-15
Identity = 78/253 (30.83%), Postives = 116/253 (45.85%), Query Frame = 2
Query:  266 LSSEERADLIKSMMRFLVMKGLNHDPATKKEMMDMVLGKTYRGK-GVLRFILSKAAKKLKDTLGLRIKTLAEH---SPYYVKDTYYVINALNHEDHAADILKGCGQAARGLLTVVLCIIYCS----ADKLVTEDDLFKKLHDQVDARIPAKASTSGRGAAKSKTRAHVEGLGDVHDVLATLVKQHYLMKKSVTKPTADCGTDIIPGYAMGARGALEVGNLQIVTLMAETMGETVDPSALVELEEEGSSQSLSQ 1000
            +  +E   L+  M R+++MKG + +P    ++ + VLG  YR K  + R IL++AA  +  T G R+  + E     P + KD Y+++N +        + +    A +GLL VV   IY S     +   TE  L   L D++D    A              R  + G  +  DVLATL +QHYL+K     P  +     +    +G R  LEVG  QIV  + E +GE VD   L ELEE  +     Q
Sbjct:   78 IGPDEEKMLVSKMSRYVLMKGSHLEPIQTSKLNEEVLGAKYRKKRNLARQILARAAAHVNKTFGYRLLRVPETRFPQPRF-KDCYFLVNGIQDGPLRTALGREQHPAMKGLLMVVFAAIYASNHNSQNNRTTETHLVAYL-DKIDTMSKA-------------VRQQLFGHQNWSDVLATLCRQHYLLKTMQKDPEGNT----LNVLELGPRAFLEVGRKQIVYFIHEAVGEDVDRVVLEELEESAAQDQECQ 311          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig636.17258.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KX60_9PHAE3.080e-9455.71MAGE domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LSU2_ECTSI1.230e-9256.13MAGE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A7S2WVH9_9STRA1.100e-1530.83Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig636contigF-serratus_M_contig636:98355..106004 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score269.2
Seed ortholog evalue1.8e-69
Seed eggNOG ortholog2880.D8LSU2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.MAGE family
EggNOG OGs2E9QF@1,2SG1D@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons8
Model size1585
Cds size708
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig636.17258.1prot_F-serratus_M_contig636.17258.1Fucus serratus malepolypeptideF-serratus_M_contig636 103245..105428 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931967.3549592-UTR-F-serratus_M_contig636:98354..984841622931967.3549592-UTR-F-serratus_M_contig636:98354..98484Fucus serratus maleUTRF-serratus_M_contig636 98355..98484 +
1690964080.6541595-UTR-F-serratus_M_contig636:98354..984841690964080.6541595-UTR-F-serratus_M_contig636:98354..98484Fucus serratus maleUTRF-serratus_M_contig636 98355..98484 +
1622931967.372176-UTR-F-serratus_M_contig636:98822..989301622931967.372176-UTR-F-serratus_M_contig636:98822..98930Fucus serratus maleUTRF-serratus_M_contig636 98823..98930 +
1690964080.6759183-UTR-F-serratus_M_contig636:98822..989301690964080.6759183-UTR-F-serratus_M_contig636:98822..98930Fucus serratus maleUTRF-serratus_M_contig636 98823..98930 +
1622931967.384877-UTR-F-serratus_M_contig636:103181..1032441622931967.384877-UTR-F-serratus_M_contig636:103181..103244Fucus serratus maleUTRF-serratus_M_contig636 103182..103244 +
1690964080.696905-UTR-F-serratus_M_contig636:103181..1032441690964080.696905-UTR-F-serratus_M_contig636:103181..103244Fucus serratus maleUTRF-serratus_M_contig636 103182..103244 +
1622931967.5119398-UTR-F-serratus_M_contig636:105428..1060041622931967.5119398-UTR-F-serratus_M_contig636:105428..106004Fucus serratus maleUTRF-serratus_M_contig636 105429..106004 +
1690964080.787225-UTR-F-serratus_M_contig636:105428..1060041690964080.787225-UTR-F-serratus_M_contig636:105428..106004Fucus serratus maleUTRF-serratus_M_contig636 105429..106004 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931967.398175-CDS-F-serratus_M_contig636:103244..1032691622931967.398175-CDS-F-serratus_M_contig636:103244..103269Fucus serratus maleCDSF-serratus_M_contig636 103245..103269 +
1690964080.7134764-CDS-F-serratus_M_contig636:103244..1032691690964080.7134764-CDS-F-serratus_M_contig636:103244..103269Fucus serratus maleCDSF-serratus_M_contig636 103245..103269 +
1622931967.411374-CDS-F-serratus_M_contig636:103586..1037861622931967.411374-CDS-F-serratus_M_contig636:103586..103786Fucus serratus maleCDSF-serratus_M_contig636 103587..103786 +
1690964080.7295883-CDS-F-serratus_M_contig636:103586..1037861690964080.7295883-CDS-F-serratus_M_contig636:103586..103786Fucus serratus maleCDSF-serratus_M_contig636 103587..103786 +
1622931967.427537-CDS-F-serratus_M_contig636:103982..1041381622931967.427537-CDS-F-serratus_M_contig636:103982..104138Fucus serratus maleCDSF-serratus_M_contig636 103983..104138 +
1690964080.7404788-CDS-F-serratus_M_contig636:103982..1041381690964080.7404788-CDS-F-serratus_M_contig636:103982..104138Fucus serratus maleCDSF-serratus_M_contig636 103983..104138 +
1622931967.443295-CDS-F-serratus_M_contig636:104512..1046081622931967.443295-CDS-F-serratus_M_contig636:104512..104608Fucus serratus maleCDSF-serratus_M_contig636 104513..104608 +
1690964080.7512877-CDS-F-serratus_M_contig636:104512..1046081690964080.7512877-CDS-F-serratus_M_contig636:104512..104608Fucus serratus maleCDSF-serratus_M_contig636 104513..104608 +
1622931967.4693618-CDS-F-serratus_M_contig636:104953..1050641622931967.4693618-CDS-F-serratus_M_contig636:104953..105064Fucus serratus maleCDSF-serratus_M_contig636 104954..105064 +
1690964080.7622116-CDS-F-serratus_M_contig636:104953..1050641690964080.7622116-CDS-F-serratus_M_contig636:104953..105064Fucus serratus maleCDSF-serratus_M_contig636 104954..105064 +
1622931967.4881642-CDS-F-serratus_M_contig636:105308..1054281622931967.4881642-CDS-F-serratus_M_contig636:105308..105428Fucus serratus maleCDSF-serratus_M_contig636 105309..105428 +
1690964080.7765996-CDS-F-serratus_M_contig636:105308..1054281690964080.7765996-CDS-F-serratus_M_contig636:105308..105428Fucus serratus maleCDSF-serratus_M_contig636 105309..105428 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig636.17258.1

>prot_F-serratus_M_contig636.17258.1 ID=prot_F-serratus_M_contig636.17258.1|Name=mRNA_F-serratus_M_contig636.17258.1|organism=Fucus serratus male|type=polypeptide|length=236bp
MMRFLVMKGLNHDPATKKEMMDMVLGKTYRGKGVLRFILSKAAKKLKDTL
GLRIKTLAEHSPYYVKDTYYVINALNHEDHAADILKGCGQAARGLLTVVL
CIIYCSADKLVTEDDLFKKLHDQVDARIPAKASTSGRGAAKSKTRAHVEG
LGDVHDVLATLVKQHYLMKKSVTKPTADCGTDIIPGYAMGARGALEVGNL
QIVTLMAETMGETVDPSALVELEEEGSSQSLSQAM*
back to top

mRNA from alignment at F-serratus_M_contig636:98355..106004+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig636.17258.1 ID=mRNA_F-serratus_M_contig636.17258.1|Name=mRNA_F-serratus_M_contig636.17258.1|organism=Fucus serratus male|type=mRNA|length=7650bp|location=Sequence derived from alignment at F-serratus_M_contig636:98355..106004+ (Fucus serratus male)
CCAGCTTCAACGAAAGCGACGCGCCAGCGACGGCTCGGGAAGCGGTGGGG CTGTAAGGGGAAACAACGAAAGTGGAGGCTCGAACTCGGGGAGAAGGCGC AGCGCGGGCTTCACGAACCTTGGCATTCAGGCACTAGTTGAATGGTTTTA TTTTTCGATCGGCTCTTCCCGATGAGCCGGTGCACACATAAAAGATGATG TTGGCCACGAGTACTCGTACGACGGTTTCGATCAAAGCAGTAAATTCCGA AGGTTTGGGAACCGCTATCGGCAGCCGTCTATTTTGCAGAGACATATCCT CTGCGTGTTGTCATTTCACGATCCATCAACATAAATATGTTGGATTTCAA GTCAAAGGGTAGACGATCGCGCGATCGCTCGACACATGGGTGCTATCTTT TTGTCCTTACTACGTCCGGTTTAACTTTATTTCTTACAACATACTCTTCT GCTAATATAATATTATAGGATGCCGACGAAGACGAGGAGAGGCAAGAATT CACCAACTCTCAGGGTGTTGCCCGGGCCAAGGTGGCCAACGCCGCTGCCA AGCCTTCGAAGGGACTACTGAGCGAGGTGAGGGTAGTACTCACTCGGACT CGTACAAGTACGTCGATAACAGCATAGGGCGTCTGCGTCCACACGTGACT CCTACAATAGCAATCCTTCGTTCCAGGGAAACCCCCTATGAATTCGATAC ATCCGACAAATGGTACGATTCAATGTCCTCGACTACGAACTATTCATTCT AATAATACTACGAATTGCTTCGTTCTCTGTTGCAGCAGTATCAGTACTAA GAGGGGCGCGGCCGTAAGTTGTTGTGACGGTTACGATTTGATTGTGATTC AGATGAATCCATGTGGACCTCAATAATGGTAGGGCTCCCGTTCCGTCGGG TTCCCTAGTGCAATGGAAAGTCTCTGGGAATGATGGGTCTTACCCGGGAG AGTTGGCGTGCTGGGGGTCGGTGGAACAGACTTGACGTGAGTACATATCA TAGACGAATATATAAAACCGATACGTTGTTAAAGTATCTTGGTAGCTCAC ATCTTGGACCTAGACGAAAAACGACACCTGTGGTTCACAGCTGAACTGAG CATAAAAGGGTCCTTAAATAATTACAACGATTCTCTAATCTAATCGCATT GTGGAGTTTTATCCTGTCAGCCTCCCAGATGAGTAAATCGGATAGATGCG TTGCAACCGCCACCTCTGATCATTTCTTTTCTCTCGACTGGAAATCGTAC AGCCCATTCTTAGACAAGAAATATTCTCATACCCTGCGAACTATCGGCGA ACATCCAACCAATCATATGATATTCAGAAGTTGACGCCTCATAAAAACTA CTCGGTTGATATTCCTAATCGCAACAGACATTTGTGCATTTCATCATCAA TGCTCATCTATCAGTTAATTCTGCTCCATTCCGTTTCAAAATATTTAATT CCAGAAAACTTCGTACCCTGACGACCATAAACGGTTCGTATTTCCAATTC GCGTGTAACGTAATCCACGACATCATCACACGTACGCGAAATGTTGGAAC AGCTGAGTATCTTGTTATACATAAAAAAGCACACGTTGGAAACAATACGG TATCTTATGGGTAAAATTACGACCTGCTAGTCATGAACACATTTATTTCT TTTTGGTCCGATCCAACTATTAATACTACAATAGTACGTATTTCAAACGA ATTGGGTATGTACTGGTCGTACACCAGCTTGTACGAAAGCTTCATTTCAT ATTCAAACGATGGGCATCGCGACGCAACAGTACTGTTGACCGAAGCAAGA ACCGAGATGATCCATGGCCAGCTTAATCGACAAGCGGCTTCTTATCCATC TGGCTCGCGTATCATAGTCGCTCCTATTCTCGACGGAACATTCTTTTCGC CTCTCGTACCTGCGTGATAGACACGGAAAGTTTACAGACGAAATGGCAAA GAACACGGCAAATATAGAGACACGAAATAGCCACTTCGAGGCGGAAAGTA ACGGATCATCCACTACCCGCCCGGGTCAAACTACTTGTTTTGCTCGGTCG ATGCGGTCCCTCGCTGTTGCCGGCCCCTCGGTAGTTTCGCAAACTCCTGG TGAGCGGCAACTTGTACTGTAGTTTTGTTTCGGGATTTACCCCGACGACT GCTTGACAATATGAAGTCCCCCCCCTGTTCCGGGATCCTCCTGCAATCAA CGTGCAAGAAGCCATCGACACCGGCTTGAAAATGGAAAGTTCCCTCCTGC TCGGTTTGTTGCACTTCAGGGTGCGGCACTCCAGGTTCGTACGACCCGTA CCGGCTGCAGGTGACTCTCGCGGCCATAAATCATATTGCGGCGGCTGTAG TGACTGCGAAAGTCGAACTGCCAGCCTCAAAAGTCTCTACCTCGACGTTC ATGTCCAAGATTAATTATTCGGGAGTAGGCGGTCGTCGAGGGTTGAACAA TCCAGTATTAAAACGTTCCGGATCGAAGCTCGCGTGTAGACGTCTCAAGG TCTGTTCAAGCATTTCAGCTATAACCTTGATCTTATCGAAACTACCACCT CTCTTCCAGGCTGCTTGTTTTTCGAGCATCCGCACACCTCGCATTTGCTC TAAGTTGTGCTATGCAGCAAGCTCCCTGACCCGAACGAGTTTGACGCACG TGTCCACGGGTTCTAGCTAATTACGATACCATCAAGCGGATATTGCACTC CTGGAAAGTTTTTATTTTTCCAAACTCTAGATGAAACGGAGTACACAGTG GGATCCCGGTTTAGCGGTTCCCTGTATATAGCGGTTACATAATCGCGGGG CACCGCTGCACCCCTGTTTAGCGGTTATAGGGCCGCTAAGCCGGTCGTGC CCCAATAGCGGTTATGGGAGCTGTTTTCTATCTCGGTTATCGATTCAAAT TTTGCGGAGACCCCAAGCGCTTGCACACACACACACATCATGCCGTGCGC GGATGGAGAGTTGTGCAAACTTCCAGATGTGGCACTGAGTCCAACCGAGG GGCATAGTTGTCGTGGTGACTGTGGTGGCCGCATGCACGGCATTTGTGGG GAGGTGGAGGATACGAATGGTGGCAATGAGATGTACGTCATTTGCCACTC GTGTGCCAAGAATCTACTTTGGGTACTGCTGAAACGTTTAGAAAACAGTC CGTAGGGGAGAACAAGCTTTTTGTTTTCCTGTATTAAAATGCAAAAAATC AAGGACTCCTTTGTCGTCTACCCTAGGGTGGTCACTTTTTCTTCTACCTT CGTATGTCTGCTTCAATGAGACACACGCATGACCCTATCAAGACGAGCTT TACGACACCTCCACATCTAGGCTAACCTCCCTCGGCTGTTGCTCTGGTTG CGTTCTACAGAACTCCTCCTGACCGAGCGGGCGTCCGCCCGGCTCTTCTA GCGGGTGACTCTTTGTCCTCGAAGCCCTGCTCCCCTCTTGTTTCAGGAAC CCCACATTACTAAAACACAAACACAGCAATCTCCTAATCGTCGCCCTCGA GCCCAGACACCTTCGATCAATCCTCCACTAGTGTAATGGTGGGGCTCCTT TTTCGTCGGGTTCCCTACTAGCGTAGTGGAAAGTCTCTGGGGAGGGTGGG TCTCACACGAGAAAGTTGTTGATGTATGTATGTATGTATGGTCATCACAC ATAGCAGAGTATGGATCAACCGTGTAAGGTTGCCAATCCTGCTCGTGGTC AGCTGAACAGGGAGAATGGATATTCCCCTGTCCCCGTGCGTGCCTGAAAA TTTGGTCTCGCGAGACGGGTTCAGCCGTCCGGTCCCGCGACAGCCTGCTC ATCTTCATACTCAGGCCGAATCTGGTGCTTACTTACGGGATTCCTCCCGA GTTCCGCGGCGGCGTCCTTTTATGAAACCGCCATACGCCATCGGGTCAGT CTCGAGTTTATCGGGTCACGCAGTTGCGTACCGATGGCGTTCACTGCCGA GAGTCCGCCGGCACAGGGCCAGTAACTCTCAAGGTAGTTCCGAACGAGTG CTGCCTTGGCAGGTCACCATGAACCAATTAATATTCGCCTCTCTTTCCCA CACCCACAATTGGTATGAATTGGGCATGTTCAAAGTACCGGCTGCTGATG TTCTTGGGGTCGGTGGAGCAGGCTTGACGCGAGTACATGTCACAGGCGAA TATATAAAACCTGTATATTATTATAGTATCTTGATAGCTCACATCTTGGG CCTACACGAAAGACGCGGACACATGTGGTTCACATTTGCACGGACATAAA GGGGTCTCCGCGAGAAGTAACACTGATATCCCGAATACGTATCATACAAA AAGGTTTTCTTTGAACAAATACGGAAACCTATCTCAGCATCCTATTGGTT ACTGCAATATACTAATATATCCGCATTTTCGAGTGTGATTCTTTCACTCA ACGTAATAAAAACGTTTTGACACTTTCTCCCCTAACCGGGGGATGCTCAA AAGGTCTAGGTGCTGTTCTGATTTTCTTTAAACTCCAAGTGGCAAGAAAC GCAGAGATAACATTCAAAACCAACATAGTAACAATTTACGAGTATCAGAT ATGTTGCACATTTTGCGACGGCACGACAAGCGTCGCGCCGTGAGTTGCCC CTCACTCGATAATCGCCATGCGAGGGAAGTCTAGCTCTAGTTCTCCTGAA CAGTATATGATGTAACTCTCTGGGCGGCAATGTGCCTCGGCGCGCCGCGC GGGGTGTGCCGTTGCAGGGACTGAACAGCGCATAAATCCTGGCCCAGCTG TCTGGGGTTTAGTCCCTCTTGGTCGAGTGACGTCCAATATACTGCTGGGC TGTTTCATTGTTGTACTGTCATAACAGGCCAAGGACGAGAGGAAAGGGAA CGAACTCAGCTCGGAGGAGAGGGCGGACTTGATAAAATCGATGATGCGCT TCCTCGTCATGAAAGGCAAGAACACACTGATCACAACACGTTTACAGTAC CCCGGCGTGAGAGGGTACCCATTCCAAGGCTCTAGGTGGCAGTAGACTGC ACGAGGGTGGTTACAGTTTCCCATTCTCTCAAACCACGTTGTGGTACTCG ATGCGATAAAGAGCGATTTGTTTGGACTTGGATGTTCACGAGGAGCGACC GTCTGGGTCTTCACCTGACCGGCCGACCGCAGGCGGGCCCCGAAACCTTG CCAACCTGTGCATTCCACTGATTGACTCTTTCAAAAGAAAAAAGGTGGGC TGTTGTGCGTTCGTCCTGGTTGATCGAAATAGGTCTAAACCATGACCCCG CCACGAAGAAGGAAATGATGGATATGGTTCTCGGCAAAACGTACCGTGGA AAGGGCGTGCTCAGGTTTATTCTCTCCAAGGCGGCCAAAAAGCTCAAAGA CACCCTTGGACTCCGTATAAAGACATTGGCCGAACACAGCCCGTACTACG TCAAGGACACATATTACGTCATCAACGCTCTGGTGAGACCTCACGTCGAG GTGACGTCGCTGTGAAGTACGCGCGTTGGCGTCGAGGTGGTTGTCTGGGA CCGACCTTTGTGACTGTCGTAGAGCGTTGCTTTGCTAATATAGTCGTATC GGCTTTGTGTTCGCTGTGAACCGAAAGCCAACGCATCTGCTCAACCCAGC CCTTGCTCCTCATCGGGAGTTAACGTAGAACCACGAGGACCACGCGGCGG ATATCCTGAAGGGCTGCGGACAAGCGGCGCGCGGGCTGCTGACGGTGGTG CTTTGCATCATCTACTGCAGCGCGGACAAGCTTGTTACCGAGGATGACTT GTTCAAGAAGTTGCACGATCAGGTTGACGCCAGAGTAAGTCACGCCCCAG CGTTTGTGGCGCAAAAGGAAAGCATCAATGGCTCAACCTGTTTTATCTCA ACCGTCGCCGAGCTGTCGAGGAGCTCTAGGCGTTATCGTAGTCGTGATCA CTTTTCCGTGATGACGGGCGCGCGGCGTCGTCCCTGCATTTGTTTTCTGT GCCTTCTTCAGTCCCTTCCCCAGTTTGGCTTTTTATGTAGGCGGTGGTGT CTCTCTTCACGGTATTGTCTTGTAATTATTGTACATTACAGCCCTTCCGC TCAATCAAAATTTACTTCAAAACTTGTACAGCATACCTCATCTATCTACA TTATGTGCTGCCAATCAGAGCCGTCAGCACGCTCTGCCTCGTCTGCGTCT TGGTTCAGATCCCTGCCAAGGCGTCGACGAGCGGACGCGGCGCAGCTAAG TCTAAGACGAGGGCTCACGTGGAGGGTCTAGGAGACGTGCATGATGTCCT CGCGGTTAGTACCGAATACGTGCATGGCGTACAGGGTGTAATTATGCTGA GGTTTTCTCTGTACACGAGCTCGTGTCAGCCCTGCGTGGAATCTTGCCCG TGACTTTTGTGTTCGCTATCCAATCACGACGATCACCTTTGGCTGTTTGC ATCTTTTCGCGGCGATGATCTTGAGCATTGTCAGGCGTCAAGCTTGGGGC GTTTTGCGACAAGATATGTTCTTATCCAATCTTCATTCTAACAGGGAACC TTTTATACCCCATTACTATTAAAAGTAAAAGCGCAGCACTGATCGTTGCG CTTTCCCACCCGTGGCCATCCGTCTGTTTGTTGCTTTCGTCGGAACCAGA CGCTCGTAAAGCAGCACTATCTCATGAAGAAGAGCGTGACGAAGCCGACA GCGGACTGTGGCACCGACATTATCCCGGGCTATGCCATGGGCGCGCGAGG AGCTCTGGAGGTGGGAGGAAGTTCACTCTACTACCTAAGCCCAAAGCAAC CGAAATATTTTGTGACGGGGGTGCTGCTCTTCAATGTAGACTGCAGAATC TCCGACCTGCTTGAAATGGCGCCGATCTATCCACCATTTCTAGCCTTGAC CGCTTGTGGTCGAAACTGTCGCTGTCAGAGCCTTTTACTAATAATAGCTG TTGTGAAAGTTATTTCGATCACGACGTTGTCGCTTTTCCCTCTTTTGCGA TCAGGTTGGAAATTTGCAGATCGTGACCCTCATGGCGGAGACCATGGGAG AAACGGTTGACCCTTCGGCCCTAGTGGAACTGGAGGAAGAAGGCAGCTCG CAGAGCCTCAGCCAGGCTATGTAAGGCTTTCAGATGTTGGTAGGAAGCCC GTGTATTTTTTAAATCAATAGAGAGGGTTAGGCGATGGGCGGCTCTGGGC GTGAGATTTGTCTTGTTCGTATAATAAAGCACGTACTGTATTTTAAGAAG CAGTGTGAATGGACGAGAAAGCGTTGGAGGGTGGGTTGGGACACTACGCC GAGGTTCTCCATTGCGGTTTCGTGCCTCAGGTGTCGGGAGTCACAGCTCT CGGCTAGATAATACATCAATAGTGAGAATAAAGTATATTCAGGGTTGGCG AAGACGGCCTAGTTCGTACCAAGTTGACCTAAACCGCGGTGTACAAGTAG CTAGGTATGCCTTCTGTGGAAAGCGCGCGAACATTGTACTGTCGCGATGT TCGTACTCGAATACCTATCGTTTTCTTAACGATATGCGTCCAGAAATATA GAGTGGGAATGCTCGTTTCGCCATCTCTGATTCAGCTACGTGTAGGGTGT ATTGCACTGCACTAGGTACGTTTTACTTCGCAGTTAAGGCAGTGCAAACG CCTGGCATGATGCCATTTTAGCCGTGCAACTGTAAGTGTATTGTTTCCTG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig636:98355..106004+

>mRNA_F-serratus_M_contig636.17258.1 ID=mRNA_F-serratus_M_contig636.17258.1|Name=mRNA_F-serratus_M_contig636.17258.1|organism=Fucus serratus male|type=CDS|length=1416bp|location=Sequence derived from alignment at F-serratus_M_contig636:98355..106004+ (Fucus serratus male)
ATGATGCGCTTCCTCGTCATGAAAGATGATGCGCTTCCTCGTCATGAAAG
GTCTAAACCATGACCCCGCCACGAAGAAGGAAATGATGGATATGGTTCTC
GGCAAAACGTACCGTGGAAAGGGCGTGCTCAGGTTTATTCTCTCCAAGGC
GGCCAAAAAGCTCAAAGACACCCTTGGACTCCGTATAAAGACATTGGCCG
AACACAGCCCGTACTACGTCAAGGACACATATTACGTCATCAACGCTCTG
GTCTAAACCATGACCCCGCCACGAAGAAGGAAATGATGGATATGGTTCTC
GGCAAAACGTACCGTGGAAAGGGCGTGCTCAGGTTTATTCTCTCCAAGGC
GGCCAAAAAGCTCAAAGACACCCTTGGACTCCGTATAAAGACATTGGCCG
AACACAGCCCGTACTACGTCAAGGACACATATTACGTCATCAACGCTCTG
AACCACGAGGACCACGCGGCGGATATCCTGAAGGGCTGCGGACAAGCGGC
GCGCGGGCTGCTGACGGTGGTGCTTTGCATCATCTACTGCAGCGCGGACA
AGCTTGTTACCGAGGATGACTTGTTCAAGAAGTTGCACGATCAGGTTGAC
GCCAGAAACCACGAGGACCACGCGGCGGATATCCTGAAGGGCTGCGGACA
AGCGGCGCGCGGGCTGCTGACGGTGGTGCTTTGCATCATCTACTGCAGCG
CGGACAAGCTTGTTACCGAGGATGACTTGTTCAAGAAGTTGCACGATCAG
GTTGACGCCAGAATCCCTGCCAAGGCGTCGACGAGCGGACGCGGCGCAGC
TAAGTCTAAGACGAGGGCTCACGTGGAGGGTCTAGGAGACGTGCATGATG
TCCTCGCGATCCCTGCCAAGGCGTCGACGAGCGGACGCGGCGCAGCTAAG
TCTAAGACGAGGGCTCACGTGGAGGGTCTAGGAGACGTGCATGATGTCCT
CGCGACGCTCGTAAAGCAGCACTATCTCATGAAGAAGAGCGTGACGAAGC
CGACAGCGGACTGTGGCACCGACATTATCCCGGGCTATGCCATGGGCGCG
CGAGGAGCTCTGGAGACGCTCGTAAAGCAGCACTATCTCATGAAGAAGAG
CGTGACGAAGCCGACAGCGGACTGTGGCACCGACATTATCCCGGGCTATG
CCATGGGCGCGCGAGGAGCTCTGGAGGTTGGAAATTTGCAGATCGTGACC
CTCATGGCGGAGACCATGGGAGAAACGGTTGACCCTTCGGCCCTAGTGGA
ACTGGAGGAAGAAGGCAGCTCGCAGAGCCTCAGCCAGGCTATGTAAGTTG
GAAATTTGCAGATCGTGACCCTCATGGCGGAGACCATGGGAGAAACGGTT
GACCCTTCGGCCCTAGTGGAACTGGAGGAAGAAGGCAGCTCGCAGAGCCT
CAGCCAGGCTATGTAA
back to top