mRNA_F-serratus_M_contig626.17100.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig626.17100.1
Unique NamemRNA_F-serratus_M_contig626.17100.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig626.17100.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig626contigF-serratus_M_contig626:222683..226913 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size2134
Cds size1320
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig626.17100.1prot_F-serratus_M_contig626.17100.1Fucus serratus malepolypeptideF-serratus_M_contig626 224018..226700 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931936.1269565-UTR-F-serratus_M_contig626:222682..2232791622931936.1269565-UTR-F-serratus_M_contig626:222682..223279Fucus serratus maleUTRF-serratus_M_contig626 222683..223279 +
1690964065.2774549-UTR-F-serratus_M_contig626:222682..2232791690964065.2774549-UTR-F-serratus_M_contig626:222682..223279Fucus serratus maleUTRF-serratus_M_contig626 222683..223279 +
1622931936.1466963-UTR-F-serratus_M_contig626:224013..2240171622931936.1466963-UTR-F-serratus_M_contig626:224013..224017Fucus serratus maleUTRF-serratus_M_contig626 224014..224017 +
1690964065.291372-UTR-F-serratus_M_contig626:224013..2240171690964065.291372-UTR-F-serratus_M_contig626:224013..224017Fucus serratus maleUTRF-serratus_M_contig626 224014..224017 +
1622931936.2031739-UTR-F-serratus_M_contig626:226700..2269131622931936.2031739-UTR-F-serratus_M_contig626:226700..226913Fucus serratus maleUTRF-serratus_M_contig626 226701..226913 +
1690964065.3337805-UTR-F-serratus_M_contig626:226700..2269131690964065.3337805-UTR-F-serratus_M_contig626:226700..226913Fucus serratus maleUTRF-serratus_M_contig626 226701..226913 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931936.165477-CDS-F-serratus_M_contig626:224017..2252771622931936.165477-CDS-F-serratus_M_contig626:224017..225277Fucus serratus maleCDSF-serratus_M_contig626 224018..225277 +
1690964065.3056653-CDS-F-serratus_M_contig626:224017..2252771690964065.3056653-CDS-F-serratus_M_contig626:224017..225277Fucus serratus maleCDSF-serratus_M_contig626 224018..225277 +
1622931936.1887758-CDS-F-serratus_M_contig626:226640..2267001622931936.1887758-CDS-F-serratus_M_contig626:226640..226700Fucus serratus maleCDSF-serratus_M_contig626 226641..226700 +
1690964065.317867-CDS-F-serratus_M_contig626:226640..2267001690964065.317867-CDS-F-serratus_M_contig626:226640..226700Fucus serratus maleCDSF-serratus_M_contig626 226641..226700 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig626.17100.1

>prot_F-serratus_M_contig626.17100.1 ID=prot_F-serratus_M_contig626.17100.1|Name=mRNA_F-serratus_M_contig626.17100.1|organism=Fucus serratus male|type=polypeptide|length=440bp
MSSASSASSKLESKTATDGPPLSMGTAPSHRSGRAPTTSSPVTSTTLRAV
AGSDNDRSRGLRPVAPVSPRVPLGGSPPAHLACFRGSWEELAPSLQARFR
AVSIADLRASLDAAEAAQDPAPSEADLHAMALAQEEFQTVIRPLQGVTTD
LEDRQRANAAAMLSAERQHHAYIRHIRGDPRPSQTSHVTERPVAPSALAG
SHAPAGLEWRQVAAVGPCRRDRALSPPARTARAPSPLPQVAPNPMVPPDA
RVHFATAGPWSLVAPRRQKPSPDPYENLRISRLRHVNSHFPANIRRETKD
VAIRVQAAFEEYGSNHYCVARAVKLATAPGIKLSPPLRTDILRLRDLLDR
AYDSPSGAEWIQGAPCQTASSGSDTSSSAGPRRREEPSSGRGNSKKASIT
SDSEDNQQESRGRSFRDRRQAELQIQRCRRVQDSAYGLR*
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mRNA from alignment at F-serratus_M_contig626:222683..226913+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig626.17100.1 ID=mRNA_F-serratus_M_contig626.17100.1|Name=mRNA_F-serratus_M_contig626.17100.1|organism=Fucus serratus male|type=mRNA|length=4231bp|location=Sequence derived from alignment at F-serratus_M_contig626:222683..226913+ (Fucus serratus male)
ATCACGGTCTATGCGATGTCTCCAGATGTTGAGACAAACCGATAATACAC
GATCTAAACATTATCTGCTCATCGACTGTGTGCCAGTCGGGGTTAAACGA
TCAGGGGCTTGAACATTCTAGAATAGGTAACTAGCAAGCACCACGAGTGG
GAATGAAGAAGATCTTCGTCGAGAACTCGCAGAGCTGAGGCAGAGCTGAG
GCAGAGACTCGACGATGAGAGGACTGCACGCGAGGAAGCAGAGGCGGCTA
GGAAAGCAGCCGTCGAGAGTCAAGCCACGCAGATGTCCGAAATGATAAGG
ATGACACAGGAACTCGTGAGCAAGAACAGTGTTAAGATGAAGAGATAGTT
TTGAACCAAAAATTAGGTTAGCCCGACGATTTCATAAAAACCGGCGGCGG
AATTAGCGTTATGCTTCAAAAGAATGCACAACTCCCTAGCTCTAGTGAAG
TTTCAGTTGCTTCAGGGTTTACACCAGCCCTCTAGCCAGTTCTCTTTTGT
CTCCTGAAGCAACGACTAACGAAGGAAAGGTTTACGAGCGTTTGTGAGAT
CCCTGCACTACAGCCTATACTCCAAGGAACATCAACCCATCATACGCGTG
AGTTCTGCGAAAGTCCTAGACCATTCATCATAAAATCTGGCGTCGAGACT
GTTTCTTGTCCCAATTAGGCTCCCTGCAGCTTTTCGCTCCTGTCTATCCC
CTTGCACGTACGATCGTTAACACCCACGATATTTTTTCAGGACAGCAGCT
TCGATCCCCCTGCCATTCCCTCAACCGACTCGAGCATGCTCCCCCCGCCT
TCGCCTGTTGCGTTAACCGAGACAAATGAAACCCCGATGTCACCGTCCAG
CGACATCGTGTTTAGTTTCCCTACGACGAACTCTTCCCAGAGATCGTTCC
CTCCCCACACACAGACACTGCAGCCCGTTTCCCATTATGGATCAAATCCA
GCTGATATCAAATCTTCTTTCGCGCTTGATATCGATGCGTTTTCTCCATC
GCGCACGCCTTACGGATATCAGCTCCGTTGCCCCTCCCCCGTTGCCTAGC
CTCCTGACCGATCACTTTGACGGTTTTGGCGCGATTACCTATAATCAGTA
CCGTTTACCGTCGGATACCTGCCCGAGAGAATATCTCAGTCCTAGTATAC
CGGATTTTGACCAGTACCGCTCGCCTGTCAGGTCGCCCGCCCCTCCAAAA
ATACCGGCCTCGTTTCCCCGCCTGTCCACACCTACTATTGTGTCTGAACA
TCGCTCCTTTTCCGCCGGCGCCTGTCGTCCCCCTACTGCCCTCCCCCTTT
CCCCTTTCGGCCCTTCCCGAGCTCCGGACAGCACCATGTCCTCAGCATCT
TCCGCTTCGTCCAAGCTGGAGTCCAAGACTGCCACCGACGGCCCTCCGCT
CTCCATGGGGACTGCACCTTCCCACCGCTCCGGTCGGGCGCCCACCACCT
CTTCCCCGGTGACATCCACCACCCTGCGCGCGGTGGCTGGTTCCGACAAC
GACCGGTCTCGCGGGCTACGCCCTGTGGCTCCCGTTTCACCACGGGTCCC
TCTCGGTGGATCACCCCCCGCCCACCTCGCTTGCTTCCGCGGATCTTGGG
AGGAGCTCGCACCATCCCTTCAGGCCCGGTTTCGAGCCGTCTCCATTGCG
GACCTGAGAGCCAGCCTGGATGCCGCCGAGGCTGCGCAGGACCCGGCCCC
CTCAGAGGCGGACCTCCACGCCATGGCTCTTGCCCAAGAGGAGTTCCAGA
CAGTGATACGCCCCCTGCAGGGGGTGACGACCGACCTCGAGGACCGCCAG
CGGGCTAACGCCGCGGCCATGCTCTCGGCCGAGCGCCAGCATCACGCGTA
CATCCGGCATATCCGGGGCGACCCACGCCCCTCCCAAACATCACACGTCA
CCGAGCGTCCAGTGGCTCCGTCCGCACTCGCTGGCTCCCATGCCCCTGCT
GGACTCGAATGGCGCCAGGTCGCGGCTGTTGGCCCCTGCAGGAGGGACCG
GGCTCTGTCACCACCGGCGAGGACCGCCCGAGCCCCGTCCCCACTTCCCC
AGGTGGCGCCTAACCCCATGGTCCCACCAGACGCCCGTGTCCACTTCGCC
ACAGCCGGCCCATGGTCCCTTGTCGCTCCTCGTCGACAAAAACCGTCCCC
CGACCCCTACGAGAACCTCCGTATTTCGCGACTGAGGCACGTCAACAGCC
ACTTTCCTGCGAACATCCGCCGGGAAACCAAAGACGTTGCCATCCGTGTT
CAAGCAGCCTTCGAAGAATACGGGAGCAATCACTACTGTGTCGCTCGCGC
CGTCAAGTTGGCCACCGCACCGGGCATCAAGCTGAGCCCACCGCTTCGCA
CCGATATCTTGCGCCTTCGCGACCTTCTCGATAGGGCGTACGACTCTCCG
TCTGGAGCCGAGTGGATTCAGGGTGCCCCCTGCCAGACCGCTTCCTCGGG
GAGCGACACCTCTTCTTCCGCGGGACCCCGACGCCGCGAGGAGCCATCTA
GCGGACGGGGTAACTCCAAAAAGGCGTCCATCACCTCGGATAGCGAGGAC
AACCAGCAGGAGTCTCGAGGACGCTCTTTTCGGGACCGGAGGCAAGTGCC
AACATTTTACCATTCCGACGACGATAGTGATGTTCCTTGTTTTCCCCCGC
GTATTTTTCGGTACCGAACGCACTCACGGCGACGGCGCACATGCGCACCC
CCTCGCGCTGCCGCCCCCGCTGCCAGTTCCCCCCCATCGTTACAGAGCAT
TATCCAAGCAGCCACCACGGCAGCGATAGCCGCCGTGGACCACCACCTAG
CCAACTTAAGGTTGTTTCCGCGACCGGACACCGACTATACGCCCGACATA
GTACCCCACCATCGCTCTCGCGCACAGCCACCGGTATCGCCGCCCCCACT
GACGGTACCAccccCCCCCCGATCCCCCCGCGCCCTTAGCACCTTTAACG
CAAATTCTTGCCCTCCCTTAGGTCCCGACAATATAGAATTACAGTGCCCC
GTAGCAAACACTACCCATGCACCGTACTCCCATAATTTTTGTCCCCCCTT
AGGTCCCCACAATGCAGAAATACCCCAGCAGGCTGTCGATCCCCCTGAAG
TACAGTACTCCGTAGGTAGCACCGCCCATATACCGTACTCCCTTAATTTT
TGTcCCCCCTTAGGTCCCCACAATGCAGAAATACCCCAGCAGGCTGTTGA
TCCCCCTGAAGTACAGTACCCCGTAGGTAGCACCGCCCATATACCGTACT
CCCTTAATTTTCGCCCCCTTAGGTCCCCACAATGCAGAAGTACCCCAGCA
GTCTGTCGATCCCCCTGGCGTACAGTACCCCCTAGGGAACACCGCCCATG
TACCGCACTCCAGAAAAATTCCCCCACAGATTGCCGTTCCCCCGGGTCAG
ACGAGTGCTGTGAACCCTCTCGCCCACCTTCCCCCCCGCGTACAGTACCC
CATAGTGAACACTGCTGGTGTACAGTACCCCGTGGCAAACACAACGCATG
TACTGTACCCCCCCACGGCCCCCGCTGGTGTACCGTACCCTCCTCCCAAC
GTCCTCCCGAGGATGGCCCCGACAGACGAGCGCCCCTTGTATGACGACAG
TTCATGCAACAGCTCACAACCACCCAACCCTTCGGGCCCCCACCCGGACT
TCGTCGCCCACGTACAGGCTGCCTTTCGCACCCTGGACACGCGCAGAATT
TCCCGCATCCAACCATTACAGTTCCCCCCTTCCGCGGACAGAACTGCTGC
TACTCAACTCTTCTATCCGCGACGCGCTGTCAGGGATCTTTGACGTCGCT
GATTCCACCGGGACCGTGACCATGGGCGCCCCTGTTTGGATTCCCGGGTG
GCATGCACCACTTCTCAAGTTGGTCAAAGCGGCTATCATTGCTAACCGCG
ACGACACCCATGACCTACACCGCCTCGTCGATGATTTGTTCTCACAATTA
CGGGAAAGGCTGAGCTCCAGATCCAGCGGTGCAGACGCGTTCAAGACTCT
GCTTACGGACTTCGCTAACTACTTTGACAGAGCACCACGTGGAGCCGCGC
TCGAGACACTCCAGCGATTTGGAGTTCGTACGGGAACTCCATTCTCTAGC
TACGTACGGGCCCTTCGCGTTGTCGTAGCCAGTACAGTAGAGAAAGGCGG
CCCGCTGGCGCCTTCCGCGACGATGGCCATTGAGCTTATTAGAATACGTA
CGGCTCAACAGTATCCCACGTTGATGCCCAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig626:222683..226913+

>mRNA_F-serratus_M_contig626.17100.1 ID=mRNA_F-serratus_M_contig626.17100.1|Name=mRNA_F-serratus_M_contig626.17100.1|organism=Fucus serratus male|type=CDS|length=2640bp|location=Sequence derived from alignment at F-serratus_M_contig626:222683..226913+ (Fucus serratus male)
ATGTCCTCAGCATCTTCCGCTTCGTCCAAGCTGGAGTCCAAGACTGCCAC
CGACGGCCCTCCGCTCTCCATGGGGACTGCACCTTCCCACCGCTCCGGTC
GGGCGCCCACCACCTCTTCCCCGGTGACATCCACCACCCTGCGCGCGGTG
GCTGGTTCCGACAACGACCGGTCTCGCGGGCTACGCCCTGTGGCTCCCGT
TTCACCACGGGTCCCTCTCGGTGGATCACCCCCCGCCCACCTCGCTTGCT
TCCGCGGATCTTGGGAGGAGCTCGCACCATCCCTTCAGGCCCGGTTTCGA
GCCGTCTCCATTGCGGACCTGAGAGCCAGCCTGGATGCCGCCGAGGCTGC
GCAGGACCCGGCCCCCTCAGAGGCGGACCTCCACGCCATGGCTCTTGCCC
AAGAGGAGTTCCAGACAGTGATACGCCCCCTGCAGGGGGTGACGACCGAC
CTCGAGGACCGCCAGCGGGCTAACGCCGCGGCCATGCTCTCGGCCGAGCG
CCAGCATCACGCGTACATCCGGCATATCCGGGGCGACCCACGCCCCTCCC
AAACATCACACGTCACCGAGCGTCCAGTGGCTCCGTCCGCACTCGCTGGC
TCCCATGCCCCTGCTGGACTCGAATGGCGCCAGGTCGCGGCTGTTGGCCC
CTGCAGGAGGGACCGGGCTCTGTCACCACCGGCGAGGACCGCCCGAGCCC
CGTCCCCACTTCCCCAGGTGGCGCCTAACCCCATGGTCCCACCAGACGCC
CGTGTCCACTTCGCCACAGCCGGCCCATGGTCCCTTGTCGCTCCTCGTCG
ACAAAAACCGTCCCCCGACCCCTACGAGAACCTCCGTATTTCGCGACTGA
GGCACGTCAACAGCCACTTTCCTGCGAACATCCGCCGGGAAACCAAAGAC
GTTGCCATCCGTGTTCAAGCAGCCTTCGAAGAATACGGGAGCAATCACTA
CTGTGTCGCTCGCGCCGTCAAGTTGGCCACCGCACCGGGCATCAAGCTGA
GCCCACCGCTTCGCACCGATATCTTGCGCCTTCGCGACCTTCTCGATAGG
GCGTACGACTCTCCGTCTGGAGCCGAGTGGATTCAGGGTGCCCCCTGCCA
GACCGCTTCCTCGGGGAGCGACACCTCTTCTTCCGCGGGACCCCGACGCC
GCGAGGAGCCATCTAGCGGACGGGGTAACTCCAAAAAGGCGTCCATCACC
TCGGATAGCGAGGACAACCAGCAGGAGTCTCGAGGACGCTCTTTTCGGGA
CCGGAGGCAAATGTCCTCAGCATCTTCCGCTTCGTCCAAGCTGGAGTCCA
AGACTGCCACCGACGGCCCTCCGCTCTCCATGGGGACTGCACCTTCCCAC
CGCTCCGGTCGGGCGCCCACCACCTCTTCCCCGGTGACATCCACCACCCT
GCGCGCGGTGGCTGGTTCCGACAACGACCGGTCTCGCGGGCTACGCCCTG
TGGCTCCCGTTTCACCACGGGTCCCTCTCGGTGGATCACCCCCCGCCCAC
CTCGCTTGCTTCCGCGGATCTTGGGAGGAGCTCGCACCATCCCTTCAGGC
CCGGTTTCGAGCCGTCTCCATTGCGGACCTGAGAGCCAGCCTGGATGCCG
CCGAGGCTGCGCAGGACCCGGCCCCCTCAGAGGCGGACCTCCACGCCATG
GCTCTTGCCCAAGAGGAGTTCCAGACAGTGATACGCCCCCTGCAGGGGGT
GACGACCGACCTCGAGGACCGCCAGCGGGCTAACGCCGCGGCCATGCTCT
CGGCCGAGCGCCAGCATCACGCGTACATCCGGCATATCCGGGGCGACCCA
CGCCCCTCCCAAACATCACACGTCACCGAGCGTCCAGTGGCTCCGTCCGC
ACTCGCTGGCTCCCATGCCCCTGCTGGACTCGAATGGCGCCAGGTCGCGG
CTGTTGGCCCCTGCAGGAGGGACCGGGCTCTGTCACCACCGGCGAGGACC
GCCCGAGCCCCGTCCCCACTTCCCCAGGTGGCGCCTAACCCCATGGTCCC
ACCAGACGCCCGTGTCCACTTCGCCACAGCCGGCCCATGGTCCCTTGTCG
CTCCTCGTCGACAAAAACCGTCCCCCGACCCCTACGAGAACCTCCGTATT
TCGCGACTGAGGCACGTCAACAGCCACTTTCCTGCGAACATCCGCCGGGA
AACCAAAGACGTTGCCATCCGTGTTCAAGCAGCCTTCGAAGAATACGGGA
GCAATCACTACTGTGTCGCTCGCGCCGTCAAGTTGGCCACCGCACCGGGC
ATCAAGCTGAGCCCACCGCTTCGCACCGATATCTTGCGCCTTCGCGACCT
TCTCGATAGGGCGTACGACTCTCCGTCTGGAGCCGAGTGGATTCAGGGTG
CCCCCTGCCAGACCGCTTCCTCGGGGAGCGACACCTCTTCTTCCGCGGGA
CCCCGACGCCGCGAGGAGCCATCTAGCGGACGGGGTAACTCCAAAAAGGC
GTCCATCACCTCGGATAGCGAGGACAACCAGCAGGAGTCTCGAGGACGCT
CTTTTCGGGACCGGAGGCAAGCTGAGCTCCAGATCCAGCGGTGCAGACGC
GTTCAAGACTCTGCTTACGGACTTCGCTAAGCTGAGCTCCAGATCCAGCG
GTGCAGACGCGTTCAAGACTCTGCTTACGGACTTCGCTAA
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