mRNA_F-serratus_M_contig6214.17048.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6214.17048.1
Unique NamemRNA_F-serratus_M_contig6214.17048.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig6214.17048.1 vs. uniprot
Match: A0A6H5L9I0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9I0_9PHAE)

HSP 1 Score: 192 bits (487), Expect = 6.380e-60
Identity = 98/133 (73.68%), Postives = 111/133 (83.46%), Query Frame = 1
Query:    1 MSAAGSASRVAERKNLNDFEKAEVIRHLLAGSKDGVLKRGAYKATAEEFGCEWQSIERLWRKYDEQHQAGVAHPQLANGREGKSGRKGIPIEELRARLRDIPLNDRTTQRSLATALGITQATLHNNLKALGLR 399
            MSAAGSAS+VA+RKN N+ EK EVIRHLL GSK+GVL  GA+KA AE+FGC W++ +RLWR+YD QH+AGV+ PQLAN R G SGRKG+PIEELR RLRDIPLNDRTTQR LA AL I   TLH NLKALGLR
Sbjct:    1 MSAAGSASQVAKRKNFNNSEKEEVIRHLLTGSKNGVLPYGAFKAAAEKFGCHWETNKRLWRRYDTQHKAGVSSPQLANRRNGNSGRKGVPIEELRERLRDIPLNDRTTQRRLAAALEIPLTTLHKNLKALGLR 133          
BLAST of mRNA_F-serratus_M_contig6214.17048.1 vs. uniprot
Match: A0A6H5KHK2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHK2_9PHAE)

HSP 1 Score: 170 bits (431), Expect = 5.180e-52
Identity = 87/133 (65.41%), Postives = 108/133 (81.20%), Query Frame = 1
Query:    1 MSAAGSASRVAERKNLNDFEKAEVIRHLLAGSKDGVLKRGAYKATAEEFGCEWQSIERLWRKYDEQHQAGVAHPQLANGREGKSGRKGIPIEELRARLRDIPLNDRTTQRSLATALGITQATLHNNLKALGLR 399
            M AAGSAS+VA+RKN N+ E  EVIR+LL GSK+GVL+ GA+K   E+FG  W++I+RLW +YD QH+AGVA PQ+ N R+G SGR+GIP+EEL+ R RDIPLN+RTTQR LA AL I ++TLH NLKALGLR
Sbjct:    1 MPAAGSASQVAKRKNFNEEETEEVIRYLLPGSKNGVLRYGAFKEAGEKFGWYWETIKRLWMRYDTQHKAGVASPQIDNRRKGNSGRQGIPLEELKERPRDIPLNERTTQRRLAAALVIPKSTLHRNLKALGLR 133          
BLAST of mRNA_F-serratus_M_contig6214.17048.1 vs. uniprot
Match: A0A6H5K5M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5M0_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 3.970e-46
Identity = 78/133 (58.65%), Postives = 101/133 (75.94%), Query Frame = 1
Query:    1 MSAAGSASRVAERKNLNDFEKAEVIRHLLAGSKDGVLKRGAYKATAEEFGCEWQSIERLWRKYDEQHQAGVAHPQLANGREGKSGRKGIPIEELRARLRDIPLNDRTTQRSLATALGITQATLHNNLKALGLR 399
            MSAAGSAS+  +RKN N  E+ EVIRHLLA S+DGVL+ GAY+  AE++GC W++I+ +W K++++  AG     + N R+G SGRKGI +E+LR RLRDIPLN+RTTQR LA ALGI Q TL  NL+ LGL+
Sbjct:    1 MSAAGSASQGTKRKNFNALEREEVIRHLLANSEDGVLRHGAYQEAAEKYGCSWKTIKGVWAKHEQREAAGDPSAYIGNNRKGNSGRKGIDLEDLRTRLRDIPLNERTTQRRLAAALGIPQPTLFRNLEKLGLK 133          
BLAST of mRNA_F-serratus_M_contig6214.17048.1 vs. uniprot
Match: A0A6H5KRW0_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRW0_9PHAE)

HSP 1 Score: 152 bits (385), Expect = 3.680e-44
Identity = 77/133 (57.89%), Postives = 104/133 (78.20%), Query Frame = 1
Query:    1 MSAAGSASRVAERKNLNDFEKAEVIRHLLAGSKDGVLKRGAYKATAEEFGCEWQSIERLWRKYDEQHQAGVAHPQLANGREGKSGRKGIPIEELRARLRDIPLNDRTTQRSLATALGITQATLHNNLKALGLR 399
            MSAAGSAS+  +RKN N  E+ EV+R+LLA S+DGV + G+Y   AE++GC W++I+R+W+K++++ ++G     + N R+G SG KGI IE LRARL +IPLN+RTTQR LA ALGI ++TLHNNLKALGLR
Sbjct:    1 MSAAGSASQGLKRKNFNVSEREEVVRYLLADSEDGVRQHGSYHRAAEKYGCHWETIKRIWQKHEKREESGDPSLYIGNDRKGHSGCKGIDIENLRARLLEIPLNERTTQRRLAAALGIPKSTLHNNLKALGLR 133          
BLAST of mRNA_F-serratus_M_contig6214.17048.1 vs. uniprot
Match: A0A6H5KLV4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLV4_9PHAE)

HSP 1 Score: 152 bits (385), Expect = 9.660e-43
Identity = 77/133 (57.89%), Postives = 104/133 (78.20%), Query Frame = 1
Query:    1 MSAAGSASRVAERKNLNDFEKAEVIRHLLAGSKDGVLKRGAYKATAEEFGCEWQSIERLWRKYDEQHQAGVAHPQLANGREGKSGRKGIPIEELRARLRDIPLNDRTTQRSLATALGITQATLHNNLKALGLR 399
            MSAAGSAS+  +RKN N  E+ EV+R+LLA S+DGV + G+Y   AE++GC W++I+R+W+K++++ ++G     + N R+G SG KGI IE LRARL +IPLN+RTTQR LA ALGI ++TLHNNLKALGLR
Sbjct:    1 MSAAGSASQGLKRKNFNVSEREEVVRYLLADSEDGVRQHGSYHRAAEKYGCHWETIKRIWQKHEKREESGDPSLYIGNDRKGHSGCKGIDIENLRARLLEIPLNERTTQRRLAAALGIPKSTLHNNLKALGLR 133          
BLAST of mRNA_F-serratus_M_contig6214.17048.1 vs. uniprot
Match: A0A6H5KBK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBK8_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 1.850e-26
Identity = 54/78 (69.23%), Postives = 63/78 (80.77%), Query Frame = 1
Query:  166 IERLWRKYDEQHQAGVAHPQLANGREGKSGRKGIPIEELRARLRDIPLNDRTTQRSLATALGITQATLHNNLKALGLR 399
             +RLW +Y+ Q +AGVA P++ N R+G SGRKGIPI+ELR RLRDIPLNDRTTQR LA ALGI   TL +NLKALGLR
Sbjct:   17 FKRLWVRYEAQRKAGVARPKIGNLRKGNSGRKGIPIQELRERLRDIPLNDRTTQRRLAAALGIATTTLFDNLKALGLR 94          
BLAST of mRNA_F-serratus_M_contig6214.17048.1 vs. uniprot
Match: A0A6H5JEL2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEL2_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 5.380e-26
Identity = 53/72 (73.61%), Postives = 61/72 (84.72%), Query Frame = 1
Query:  184 KYDEQHQAGVAHPQLANGREGKSGRKGIPIEELRARLRDIPLNDRTTQRSLATALGITQATLHNNLKALGLR 399
            +YD QH+AGVA PQ+ N R+G SGRKGIP+EEL+ RLRDIPLNDRTTQR LA ALGI ++TLH NLK LGLR
Sbjct:    2 RYDTQHKAGVASPQIENRRKGNSGRKGIPLEELKERLRDIPLNDRTTQRRLAAALGIPKSTLHRNLKVLGLR 73          
BLAST of mRNA_F-serratus_M_contig6214.17048.1 vs. uniprot
Match: A0A6H5JAZ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAZ0_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 2.730e-22
Identity = 51/72 (70.83%), Postives = 58/72 (80.56%), Query Frame = 1
Query:  184 KYDEQHQAGVAHPQLANGREGKSGRKGIPIEELRARLRDIPLNDRTTQRSLATALGITQATLHNNLKALGLR 399
            +Y  QH+AGVA P++ N R G SGRKGIP+EELR RLRDIPLN RTTQR LA ALGI ++TLH N KALGLR
Sbjct:    2 RYYTQHKAGVASPKIENRRMGNSGRKGIPLEELRERLRDIPLN-RTTQRRLAAALGIPKSTLHRNPKALGLR 72          
BLAST of mRNA_F-serratus_M_contig6214.17048.1 vs. uniprot
Match: A0A225WYZ1_9STRA (Mariner Transposase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WYZ1_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 2.520e-12
Identity = 36/113 (31.86%), Postives = 63/113 (55.75%), Query Frame = 1
Query:   37 RKNLNDFEKAEVIRHLLAGSKDGVLKRGAYKATAEEFGCEWQSIERLWRKYDEQHQAGVAHPQLANGREGKSGRKGIPIEELRARLRDIPLNDRTTQRSLATALGITQATLHN 375
            + +L+D  +  ++ HLL  S  G L RGA  + A +F     +++R+W +Y++   AG     +++  +G SGRKG    EL A++R +P+  RT  R  A +LG++   + N
Sbjct:    3 KSSLDDSTRRAILLHLLIASTGGELPRGAKTSAATKFNVHRHTVDRIWSRYNDSVAAGDLSGDVSSRYKGNSGRKGYDRVELAAKIRSVPVEQRTNYRQTAKSLGLSVGLIFN 115          
BLAST of mRNA_F-serratus_M_contig6214.17048.1 vs. uniprot
Match: A0A6H5J767_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J767_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 6.200e-12
Identity = 35/59 (59.32%), Postives = 44/59 (74.58%), Query Frame = 1
Query:    1 MSAAGSASRVAERKNLNDFEKAEVIRHLLAGSKDGVLKRGAYKATAEEFGCEWQSIERL 177
            MSAAGSAS+V +R   N  E  EVIR+LLAGSK+ VL+ GA+K   E FGC W++I+RL
Sbjct:    1 MSAAGSASQVEKR---NKEESEEVIRYLLAGSKNRVLRYGAFKEAGETFGCHWETIKRL 56          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6214.17048.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L9I0_9PHAE6.380e-6073.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHK2_9PHAE5.180e-5265.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5M0_9PHAE3.970e-4658.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KRW0_9PHAE3.680e-4457.89Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLV4_9PHAE9.660e-4357.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBK8_9PHAE1.850e-2669.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JEL2_9PHAE5.380e-2673.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAZ0_9PHAE2.730e-2270.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A225WYZ1_9STRA2.520e-1231.86Mariner Transposase n=1 Tax=Phytophthora megakarya... [more]
A0A6H5J767_9PHAE6.200e-1259.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6214contigF-serratus_M_contig6214:28338..28739 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score71.2
Seed ortholog evalue4e-10
Seed eggNOG ortholog164328.Phyra75254
Hectar predicted targeting categoryother localisation
EggNOG OGs2CTHC@1,2RGBC@2759,3QHYT@4776
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size402
Cds size402
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931926.3368456-CDS-F-serratus_M_contig6214:28337..287391622931926.3368456-CDS-F-serratus_M_contig6214:28337..28739Fucus serratus maleCDSF-serratus_M_contig6214 28338..28739 +
1690964060.841535-CDS-F-serratus_M_contig6214:28337..287391690964060.841535-CDS-F-serratus_M_contig6214:28337..28739Fucus serratus maleCDSF-serratus_M_contig6214 28338..28739 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6214.17048.1prot_F-serratus_M_contig6214.17048.1Fucus serratus malepolypeptideF-serratus_M_contig6214 28338..28739 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6214.17048.1

>prot_F-serratus_M_contig6214.17048.1 ID=prot_F-serratus_M_contig6214.17048.1|Name=mRNA_F-serratus_M_contig6214.17048.1|organism=Fucus serratus male|type=polypeptide|length=134bp
MSAAGSASRVAERKNLNDFEKAEVIRHLLAGSKDGVLKRGAYKATAEEFG
CEWQSIERLWRKYDEQHQAGVAHPQLANGREGKSGRKGIPIEELRARLRD
IPLNDRTTQRSLATALGITQATLHNNLKALGLRT
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mRNA from alignment at F-serratus_M_contig6214:28338..28739+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6214.17048.1 ID=mRNA_F-serratus_M_contig6214.17048.1|Name=mRNA_F-serratus_M_contig6214.17048.1|organism=Fucus serratus male|type=mRNA|length=402bp|location=Sequence derived from alignment at F-serratus_M_contig6214:28338..28739+ (Fucus serratus male)
ATGTCCGCTGCTGGGAGTGCCTCCCGGGTGGCAGAACGCAAGAATCTCAA CGATTTCGAAAAAGCTGAGGTGATTCGGCACCTCCTCGCTGGCAGCAAGG ACGGGGTTTTGAAGCGAGGTGCGTACAAGGCAACCGCGGAGGAGTTCGGC TGCGAATGGCAGTCGATTGAGAGACTGTGGAGGAAGTACGATGAGCAGCA TCAAGCAGGGGTCGCCCACCCGCAACTGGCAAACGGTCGCGAGGGGAAAA GCGGCAGGAAGGGCATTCCCATCGAAGAATTGCGTGCGCGCCTCCGTGAT ATCCCGCTGAACGACCGCACCACACAGCGCAGCTTGGCTACGGCGCTCGG GATTACCCAGGCTACGCTACACAACAATCTCAAGGCGCTTGGATTGAGGA CC
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Coding sequence (CDS) from alignment at F-serratus_M_contig6214:28338..28739+

>mRNA_F-serratus_M_contig6214.17048.1 ID=mRNA_F-serratus_M_contig6214.17048.1|Name=mRNA_F-serratus_M_contig6214.17048.1|organism=Fucus serratus male|type=CDS|length=804bp|location=Sequence derived from alignment at F-serratus_M_contig6214:28338..28739+ (Fucus serratus male)
ATGTCCGCTGCTGGGAGTGCCTCCCGGGTGGCAGAACGCAAGAATCTCAA
CGATTTCGAAAAAGCTGAGGTGATTCGGCACCTCCTCGCTGGCAGCAAGG
ACGGGGTTTTGAAGCGAGGTGCGTACAAGGCAACCGCGGAGGAGTTCGGC
TGCGAATGGCAGTCGATTGAGAGACTGTGGAGGAAGTACGATGAGCAGCA
TCAAGCAGGGGTCGCCCACCCGCAACTGGCAAACGGTCGCGAGGGGAAAA
GCGGCAGGAAGGGCATTCCCATCGAAGAATTGCGTGCGCGCCTCCGTGAT
ATCCCGCTGAACGACCGCACCACACAGCGCAGCTTGGCTACGGCGCTCGG
GATTACCCAGGCTACGCTACACAACAATCTCAAGGCGCTTGGATTGAGGA
CCATGTCCGCTGCTGGGAGTGCCTCCCGGGTGGCAGAACGCAAGAATCTC
AACGATTTCGAAAAAGCTGAGGTGATTCGGCACCTCCTCGCTGGCAGCAA
GGACGGGGTTTTGAAGCGAGGTGCGTACAAGGCAACCGCGGAGGAGTTCG
GCTGCGAATGGCAGTCGATTGAGAGACTGTGGAGGAAGTACGATGAGCAG
CATCAAGCAGGGGTCGCCCACCCGCAACTGGCAAACGGTCGCGAGGGGAA
AAGCGGCAGGAAGGGCATTCCCATCGAAGAATTGCGTGCGCGCCTCCGTG
ATATCCCGCTGAACGACCGCACCACACAGCGCAGCTTGGCTACGGCGCTC
GGGATTACCCAGGCTACGCTACACAACAATCTCAAGGCGCTTGGATTGAG
GACC
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