mRNA_F-serratus_M_contig6206.17040.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6206.17040.1
Unique NamemRNA_F-serratus_M_contig6206.17040.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6206.17040.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6206contigF-serratus_M_contig6206:7640..9034 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size359
Cds size357
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6206.17040.1prot_F-serratus_M_contig6206.17040.1Fucus serratus malepolypeptideF-serratus_M_contig6206 7641..9034 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931924.5570529-CDS-F-serratus_M_contig6206:7640..77901622931924.5570529-CDS-F-serratus_M_contig6206:7640..7790Fucus serratus maleCDSF-serratus_M_contig6206 7641..7790 -
1690964059.9008753-CDS-F-serratus_M_contig6206:7640..77901690964059.9008753-CDS-F-serratus_M_contig6206:7640..7790Fucus serratus maleCDSF-serratus_M_contig6206 7641..7790 -
1622931924.5741243-CDS-F-serratus_M_contig6206:8235..84031622931924.5741243-CDS-F-serratus_M_contig6206:8235..8403Fucus serratus maleCDSF-serratus_M_contig6206 8236..8403 -
1690964059.9135225-CDS-F-serratus_M_contig6206:8235..84031690964059.9135225-CDS-F-serratus_M_contig6206:8235..8403Fucus serratus maleCDSF-serratus_M_contig6206 8236..8403 -
1622931924.5915709-CDS-F-serratus_M_contig6206:8995..90341622931924.5915709-CDS-F-serratus_M_contig6206:8995..9034Fucus serratus maleCDSF-serratus_M_contig6206 8996..9034 -
1690964059.9234111-CDS-F-serratus_M_contig6206:8995..90341690964059.9234111-CDS-F-serratus_M_contig6206:8995..9034Fucus serratus maleCDSF-serratus_M_contig6206 8996..9034 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6206.17040.1

>prot_F-serratus_M_contig6206.17040.1 ID=prot_F-serratus_M_contig6206.17040.1|Name=mRNA_F-serratus_M_contig6206.17040.1|organism=Fucus serratus male|type=polypeptide|length=119bp
AREDRARLRETRKERKKRKRRGCEDASGNGDGRELARKSSGQSFDGVRVT
AASSVAPGRVVVNEDDDSLGLNTAHADTSEFEVFKSRRTKFKERKKRRVS
EEKAAAQRARREAFAARKA
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mRNA from alignment at F-serratus_M_contig6206:7640..9034-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6206.17040.1 ID=mRNA_F-serratus_M_contig6206.17040.1|Name=mRNA_F-serratus_M_contig6206.17040.1|organism=Fucus serratus male|type=mRNA|length=1395bp|location=Sequence derived from alignment at F-serratus_M_contig6206:7640..9034- (Fucus serratus male)
GCGAGGGAGGATAGGGCGAGGCTGAGGGAGACCCGTAAGGTAATTTGACA
GCAGCTCACGCTCGCCCGGCGGCAGGGGGAGTCTCAGTACGAAAACGTAG
GAGTCATGCTTTTGAGCTACGTTCACTCCCAGCGAACGTTGTTGCGTTTT
GGGCGATCTTTCCTCGAAAACCACGGAGAAACCACTACCATGATTCCCTA
CAACCTATCTCCCGCGTGGTTTAACCTGTACAAATATGAACGTTGGGAGG
GCTCTTGGCTTGACTGGCCATGCAGGGTTACAAGTCAAACTCCTCTTCCT
ATTCAATCCCAAACGTGTGACAAAGGGATGACGTGGGGGTATTTGTCCAT
CCGTGGGCACACACGTGTGCGTACATGCGTACCAGTACGTTTCAAGCAAA
TCTGGTGTGCGGGAAGACGGACAAGAAATTAAAAAAATACATTTTGATTA
TTTATTTATTTATCTTGACCCAAATTTCTGACGTCCAAATAATGCAAACG
TGTTATCCCATTCTGACCCTCTTTATACCTCGCCGTTGCCATTGCCATTC
ATTACCGTACCTTTCACTTGGTGTCATTCCGTTCGTCCTTACGCCATGCC
ACTTGATGCGATACGATGCAACATGATACAGGAGCGAAAGAAGCGGAAGC
GGAGAGGGTGTGAGGATGCCTCCGGGAACGGAGATGGGAGAGAGCTGGCG
AGAAAATCAAGCGGGCAGAGTTTCGATGGAGTCCGGGTGACAGCGGCATC
AAGCGTGGCGCCCGGGCGTGTCGTGGTGAACGAGGACGACGATTCACTGG
TCAGTTTCGAAGTATAACAATAATATGAAGTAGAAGTACTCTTAGCGGAG
TTGGAGTTGTTGATGCTGTTCCGTGCGTCCTCCTTTCTATCTAAAAACCC
CTGCTGCTTGCCTCCTCTCTGAAACATAATGTACTGACGGTTCCGTACCT
CTTCTACCCTTTGAAGGCAGCAACCCACAGCTACCTGGAAGTACCACTGT
TGTAATTACTCGTAGGTATGAAACGGATTGAGTAGGCTGTTCGGCAGCAG
CATGTATCCGAGTGTTTATTCTGTAATGCCTGTTTCTTTACCAGCACATA
TACTTGACGGACAGGCGGAAGGGTTTGATTTCTCCGAATGGACAAATCGT
GGTTCAAAGGATTGGCCGTTACATGGGCAAAAATCAGCATCTGCAGTAAT
ATTAATAGTGTAAATCTGTTATCTCGTGGACGTCGTTTTACCAGGGACTC
AACACGGCGCACGCCGACACCTCCGAATTCGAGGTGTTCAAGTCTCGGCG
AACGAAATTTAAAGAGCGGAAGAAACGACGAGTTTCGGAGGAAAAGGCGG
CAGCGCAGAGGGCCCGGAGAGAAGCCTTTGCTGCTCGAAAGGCTG
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Coding sequence (CDS) from alignment at F-serratus_M_contig6206:7640..9034-

>mRNA_F-serratus_M_contig6206.17040.1 ID=mRNA_F-serratus_M_contig6206.17040.1|Name=mRNA_F-serratus_M_contig6206.17040.1|organism=Fucus serratus male|type=CDS|length=714bp|location=Sequence derived from alignment at F-serratus_M_contig6206:7640..9034- (Fucus serratus male)
GCGAGGGAGGATAGGGCGAGGCTGAGGGAGACCCGTAAGGCGAGGGAGGA
TAGGGCGAGGCTGAGGGAGACCCGTAAGGAGCGAAAGAAGCGGAAGCGGA
GAGGGTGTGAGGATGCCTCCGGGAACGGAGATGGGAGAGAGCTGGCGAGA
AAATCAAGCGGGCAGAGTTTCGATGGAGTCCGGGTGACAGCGGCATCAAG
CGTGGCGCCCGGGCGTGTCGTGGTGAACGAGGACGACGATTCACTGGAGC
GAAAGAAGCGGAAGCGGAGAGGGTGTGAGGATGCCTCCGGGAACGGAGAT
GGGAGAGAGCTGGCGAGAAAATCAAGCGGGCAGAGTTTCGATGGAGTCCG
GGTGACAGCGGCATCAAGCGTGGCGCCCGGGCGTGTCGTGGTGAACGAGG
ACGACGATTCACTGGGACTCAACACGGCGCACGCCGACACCTCCGAATTC
GAGGTGTTCAAGTCTCGGCGAACGAAATTTAAAGAGCGGAAGAAACGACG
AGTTTCGGAGGAAAAGGCGGCAGCGCAGAGGGCCCGGAGAGAAGCCTTTG
CTGCTCGAAAGGCTGGACTCAACACGGCGCACGCCGACACCTCCGAATTC
GAGGTGTTCAAGTCTCGGCGAACGAAATTTAAAGAGCGGAAGAAACGACG
AGTTTCGGAGGAAAAGGCGGCAGCGCAGAGGGCCCGGAGAGAAGCCTTTG
CTGCTCGAAAGGCT
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