mRNA_F-serratus_M_contig62.17020.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig62.17020.1
Unique NamemRNA_F-serratus_M_contig62.17020.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig62.17020.1 vs. uniprot
Match: D7FX37_ECTSI (Small Conductance Mechanosensitive Ion channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX37_ECTSI)

HSP 1 Score: 165 bits (418), Expect = 7.860e-44
Identity = 83/106 (78.30%), Postives = 98/106 (92.45%), Query Frame = 2 
Query:  257 ENDEKQEVLMRTTFCPALHPDLLNVAFKMFDFDDNGTVTKEEMVLGVVGTFKDHRSLALTLQDSQHIAQKLGLLVMTLVVFILVFVWLSIWGADVVQLSVTFASFL 574
            E  +++EVL+RTTFCPAL P+LL+VAFK+FD D++GTVTKEEMVLGVVGTFKDHRSLA TLQDS+HIAQKLGL++M +++FIL FVWLSIWGADVV LSVTFASFL
Sbjct:  830 EKPKQEEVLVRTTFCPALEPELLDVAFKIFDLDNSGTVTKEEMVLGVVGTFKDHRSLAHTLQDSEHIAQKLGLIIMCVILFILFFVWLSIWGADVVSLSVTFASFL 935
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BLAST of mRNA_F-serratus_M_contig62.17020.1 vs. uniprot
Match: A0A6H5JDS1_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDS1_9PHAE)

HSP 1 Score: 162 bits (411), Expect = 6.870e-43
Identity = 81/106 (76.42%), Postives = 97/106 (91.51%), Query Frame = 2 
Query:  257 ENDEKQEVLMRTTFCPALHPDLLNVAFKMFDFDDNGTVTKEEMVLGVVGTFKDHRSLALTLQDSQHIAQKLGLLVMTLVVFILVFVWLSIWGADVVQLSVTFASFL 574
            E  +++EVL+R TFCPAL P+LL+VAFK+FD D++GT+TKEEMVLGVVGTFKDHRSLA TLQDS+HIAQKLGL++M +++FIL FVWLSIWGADVV LSVTFASFL
Sbjct:  878 EKPKQEEVLVRKTFCPALEPELLDVAFKIFDLDNSGTITKEEMVLGVVGTFKDHRSLAHTLQDSEHIAQKLGLIIMCVILFILFFVWLSIWGADVVSLSVTFASFL 983
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BLAST of mRNA_F-serratus_M_contig62.17020.1 vs. uniprot
Match: A0A6H5JBC1_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBC1_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 9.590e-32
Identity = 70/111 (63.06%), Postives = 88/111 (79.28%), Query Frame = 2 
Query:  245 SSDE-ENDEKQEVLMRTTFCPALHPDLLNVAFKMFDFDDNGTVTKEEMVLGVVGTFKDHRSLALTLQDSQHIAQKLGLLVMTLVVFILVFVWLSIWGADVVQLSVTFASFL 574
            SSDE +  +++E+L R T CP L   +L +AF +FD D+NG++TK EMVLGVV TFKDHRSLA TL DS+HIA+KLGL++  L++FIL FVWLSI G DV+ LSVTFASFL
Sbjct:  858 SSDEVDKPQEEELLTRETLCPMLEEQVLEMAFTIFDMDNNGSITKAEMVLGVVDTFKDHRSLAHTLHDSEHIARKLGLIIFWLILFILAFVWLSILGFDVLSLSVTFASFL 968
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BLAST of mRNA_F-serratus_M_contig62.17020.1 vs. uniprot
Match: A0A835Z0M4_9STRA (Mechanosensitive ion channel-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0M4_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 4.990e-19
Identity = 44/93 (47.31%), Postives = 67/93 (72.04%), Query Frame = 2 
Query:  296 FCPALHPDLLNVAFKMFDFDDNGTVTKEEMVLGVVGTFKDHRSLALTLQDSQHIAQKLGLLVMTLVVFILVFVWLSIWGADVVQLSVTFASFL 574
            FCPA+   L   AF +FD + +G VTK++++ GVV  +KDH++LA TL DSQ +  KLG ++  L+ F+++F+WLSIWG   + +S+TF+SFL
Sbjct:  686 FCPAMSTTLRPHAFALFDKEQHGVVTKDDLLQGVVSIYKDHKNLARTLADSQQMVNKLGQIIGALMSFVMIFIWLSIWGYQFLSISITFSSFL 778
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BLAST of mRNA_F-serratus_M_contig62.17020.1 vs. uniprot
Match: A0A835YNP7_9STRA (Mechanosensitive ion channel-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNP7_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 2.910e-15
Identity = 42/80 (52.50%), Postives = 59/80 (73.75%), Query Frame = 2 
Query:  335 FKMFDFDDNGTVTKEEMVLGVVGTFKDHRSLALTLQDSQHIAQKLGLLVMTLVVFILVFVWLSIWGADVVQLSVTFASFL 574
            F +FD DD+  +T EE+V GVV  +KDH+SLALTLQDSQ +A KLG ++   ++  L+F+WL I+G D+  L++TFAS L
Sbjct:    5 FALFDRDDSNDITHEEVVNGVVNIYKDHQSLALTLQDSQRMAHKLGEVLGAGILIALIFIWLRIFGRDIFALTLTFASVL 84
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BLAST of mRNA_F-serratus_M_contig62.17020.1 vs. uniprot
Match: A0A0D2U9P5_CAPO3 (EF-hand domain-containing protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2U9P5_CAPO3)

HSP 1 Score: 63.5 bits (153), Expect = 2.220e-8
Identity = 36/89 (40.45%), Postives = 55/89 (61.80%), Query Frame = 2 
Query:  308 LHPDLLNVAFKMFDFDDNGTVTKEEMVLGVVGTFKDHRSLALTLQDSQHIAQKLGLLVMTLVVFILVFVWLSIWGADVVQLSVTFASFL 574
            L PD+   AFK+FD D +G +TK E    V+  +K+ ++LA  L D++   +KL  +   L+ FIL+FVWL+I G DV    +T ++FL
Sbjct:  723 LKPDMAVRAFKLFDHDMDGKITKAEAKETVLNIYKERKALAAGLSDAKTAVRKLDNVFTVLLCFILLFVWLAILGVDVTNFFLTLSTFL 811
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BLAST of mRNA_F-serratus_M_contig62.17020.1 vs. uniprot
Match: A0A138ZYI3_GONPJ (EF-hand domain-containing protein n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A138ZYI3_GONPJ)

HSP 1 Score: 55.8 bits (133), Expect = 8.990e-6
Identity = 31/99 (31.31%), Postives = 55/99 (55.56%), Query Frame = 2 
Query:  263 DEKQEVLMRTTFCPALHPDLLNVAFKMFDFDDNGTVTKEEMVLGVVGTFKDHRSLALTLQDSQHIAQKLGLLVMTLVVFILVFVWLSIWGADVVQLSVT 559
            ++K E+ +   +     P +   AF +FD +  G ++  EM   VV  F++ R+L+ ++ D      KL L++  + VFIL+FVWL ++G D+  + VT
Sbjct:  412 EDKPEISVEQFYRVFNKPGVAKKAFAIFDTNGQGGISAREMRSSVVNIFEERRNLSKSISDMHKALAKLNLVLTVVTVFILLFVWLLVFGVDLSSVFVT 510
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BLAST of mRNA_F-serratus_M_contig62.17020.1 vs. uniprot
Match: A0A316V4K3_9BASI (EF-hand domain-containing protein n=1 Tax=Meira miltonrushii TaxID=1280837 RepID=A0A316V4K3_9BASI)

HSP 1 Score: 53.1 bits (126), Expect = 7.650e-5
Identity = 27/69 (39.13%), Postives = 45/69 (65.22%), Query Frame = 2 
Query:  332 AFKMFDFDDNGTVTKEEMVLGVVGTFKDHRSLALTLQDSQHIAQKLGLLVMTLVVFILVFVWLSIWGAD 538
            AFK FD D NG V+K+E   GV   F++ R+LA +L+D+    QKL  +++ + + I++F+WL I+  +
Sbjct:  523 AFKHFDADGNGDVSKQEFRDGVQRIFRERRALATSLKDASSAVQKLDGVLLGIALIIMIFIWLLIFNGN 591
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig62.17020.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FX37_ECTSI7.860e-4478.30Small Conductance Mechanosensitive Ion channel n=1... [more]
A0A6H5JDS1_9PHAE6.870e-4376.42EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5JBC1_9PHAE9.590e-3263.06EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A835Z0M4_9STRA4.990e-1947.31Mechanosensitive ion channel-domain-containing pro... [more]
A0A835YNP7_9STRA2.910e-1552.50Mechanosensitive ion channel-domain-containing pro... [more]
A0A0D2U9P5_CAPO32.220e-840.45EF-hand domain-containing protein n=1 Tax=Capsaspo... [more]
A0A138ZYI3_GONPJ8.990e-631.31EF-hand domain-containing protein n=1 Tax=Gonapody... [more]
A0A316V4K3_9BASI7.650e-539.13EF-hand domain-containing protein n=1 Tax=Meira mi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig62contigF-serratus_M_contig62:662548..664978 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score167.5
Seed ortholog evalue5.7e-39
Seed eggNOG ortholog2880.D7FX37
KEGG koko:K02575,ko:K22048
KEGG TC1.A.23.4,2.A.1.8
KEGG Pathwayko00910,map00910
KEGG ModuleM00615
Hectar predicted targeting categoryother localisation
EggNOG free text desc.mechanosensitive ion channel activity
EggNOG OGsCOG0668@1,KOG4629@2759
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02000
Exons4
Model size574
Cds size552
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig62.17020.1prot_F-serratus_M_contig62.17020.1Fucus serratus malepolypeptideF-serratus_M_contig62 662570..664978 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931921.034537-UTR-F-serratus_M_contig62:662547..6625691622931921.034537-UTR-F-serratus_M_contig62:662547..662569Fucus serratus maleUTRF-serratus_M_contig62 662548..662569 +
1690964058.3737416-UTR-F-serratus_M_contig62:662547..6625691690964058.3737416-UTR-F-serratus_M_contig62:662547..662569Fucus serratus maleUTRF-serratus_M_contig62 662548..662569 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931921.0590267-CDS-F-serratus_M_contig62:662569..6626361622931921.0590267-CDS-F-serratus_M_contig62:662569..662636Fucus serratus maleCDSF-serratus_M_contig62 662570..662636 +
1690964058.3941228-CDS-F-serratus_M_contig62:662569..6626361690964058.3941228-CDS-F-serratus_M_contig62:662569..662636Fucus serratus maleCDSF-serratus_M_contig62 662570..662636 +
1622931921.0837307-CDS-F-serratus_M_contig62:663444..6637341622931921.0837307-CDS-F-serratus_M_contig62:663444..663734Fucus serratus maleCDSF-serratus_M_contig62 663445..663734 +
1690964058.4052498-CDS-F-serratus_M_contig62:663444..6637341690964058.4052498-CDS-F-serratus_M_contig62:663444..663734Fucus serratus maleCDSF-serratus_M_contig62 663445..663734 +
1622931921.1101396-CDS-F-serratus_M_contig62:664226..6643551622931921.1101396-CDS-F-serratus_M_contig62:664226..664355Fucus serratus maleCDSF-serratus_M_contig62 664227..664355 +
1690964058.4130344-CDS-F-serratus_M_contig62:664226..6643551690964058.4130344-CDS-F-serratus_M_contig62:664226..664355Fucus serratus maleCDSF-serratus_M_contig62 664227..664355 +
1622931921.125974-CDS-F-serratus_M_contig62:664912..6649781622931921.125974-CDS-F-serratus_M_contig62:664912..664978Fucus serratus maleCDSF-serratus_M_contig62 664913..664978 +
1690964058.4207647-CDS-F-serratus_M_contig62:664912..6649781690964058.4207647-CDS-F-serratus_M_contig62:664912..664978Fucus serratus maleCDSF-serratus_M_contig62 664913..664978 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig62.17020.1

>prot_F-serratus_M_contig62.17020.1 ID=prot_F-serratus_M_contig62.17020.1|Name=mRNA_F-serratus_M_contig62.17020.1|organism=Fucus serratus male|type=polypeptide|length=184bp
MSVVMEESLSWADLERMDSTGDETAADTAKDEKKELGEGMAADSHRSMGD
KHHAPKRPGDDGGRNSSRGRSISTSSDEENDEKQEVLMRTTFCPALHPDL
LNVAFKMFDFDDNGTVTKEEMVLGVVGTFKDHRSLALTLQDSQHIAQKLG
LLVMTLVVFILVFVWLSIWGADVVQLSVTFASFL
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mRNA from alignment at F-serratus_M_contig62:662548..664978+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig62.17020.1 ID=mRNA_F-serratus_M_contig62.17020.1|Name=mRNA_F-serratus_M_contig62.17020.1|organism=Fucus serratus male|type=mRNA|length=2431bp|location=Sequence derived from alignment at F-serratus_M_contig62:662548..664978+ (Fucus serratus male)
TGGCGACGGAAAAGGTGGCCGCATGTCGGTTGTGATGGAGGAGTCATTGA
GCTGGGCCGACCTAGAGAGAATGGATTCGACCGGCGACGGTAAGGCTCCT
GACACGAAAAGCGTCAGCCTCATATTTCAACATGCCCGCTTCATACCAAT
AGTGGGTATGGGAAAAAAGAGGCGCACATTAGTTGGTACATGGTGACCTG
CAAAATGGTATCACCTGTTACTGGAAATATATTGCCGACTACTGGCCCTA
TACCGCCGGACTCTCGGCAGTGAACACCATCGGTACCCAAATGCGTGACT
CGATTAACTCGGGACTAACCCGATGGCGTATGACGGTTTAAACAAATAAA
TGGGCGCCACACGGAAATCGGGAGGAATCCCGTAAGTAAGCACCAGATTC
AGCCTGGGTATGAAGAATGAACAGGCTGACGCGGGGTGGGACGGCTGAAA
CCGTCTCGCTAGACCAACTTTTCAGGCGCGTAAGGGGACAAGAGGATATT
CATTTTTCCTGCTCAGCTTACCACGAGCAAGATTGGCAACCATACCCGTT
TGTACCATACTCTGCTGTATATGATGACGATACATACAATAGATACATAC
ATGAGGATCAATACGAGTGGCATAGAATGACTAGGATGACAGGGCCGGAT
TGCGCGGTTATGTGCAATTTAATAAATATACATACATACATACATACATA
CATACATACATACATACATACATACATACATACATACATACATACATACA
TACATACATACATACATACATACATACATACATACATACATACATACATA
CATACATACATACATACATACATACATACATACATACATACATACATACA
TACATACATACATACATATATACACACTGCTGACGCTGCCGATGCAGAAA
CCGCCGCTGACACTGCGAAAGACGAGAAGAAGGAGCTCGGGGAGGGAATG
GCGGCCGATAGTCACCGTTCCATGGGCGACAAGCACCACGCCCCGAAGAG
ACCAGGCGATGACGGTGGCAGGAACTCGTCTAGGGGCAGGTCGATATCAA
CGTCGTCAGATGAAGAAAACGACGAGAAACAGGAGGTGTTGATGAGGACG
ACTTTCTGCCCGGCGCTGCACCCCGACCTCCTGAACGTCGCGTTCAAGAT
GTTCGACTTCGACGACAACGGTACCGTCACCAAAGAGGTTCGGGCTGCCT
GTGTATTAATGCCGTAACAAAAGGGTGTATGTGGGTCTGTTTAGATTTTG
CGAAACTCCATAGCCGGAATTGGAAGCTGAAGATCTGTCTTGATCCGCTA
ATGAACGATACCAGCCACAAGTTTTGTGTTGTATATATATGTACCTATCA
CGGGCTTGATGGATCGTGGAAGTAATAGTGGTGAAATCCCGGCTTTTGAG
TGAGCGGTGCTGGACGATTCCTTCCTGGATATCCACGGAGCAGTCTGTCC
TCTAAAGATGAACGAGGTTGACTTCAAACACCGACGGTTGTGGCTTAGCC
TTTGCTATTGGCGGGAAAGTACTGGGATCGGTCGACGGTGGAAAAGCGTG
CTAAACGCAGTATCTCGCGCACTGTCGTCGCGCGTGTTCCCCCGTATGAC
GTTCGTTTATTTTTGTTTTTTCCATGCTGCGTTTTCCCTCAACTCTTGCC
CTTTGGGGGGGGTGCGTTTCGACATGCAGGAGATGGTGCTTGGCGTGGTC
GGGACGTTCAAAGACCACCGGAGCTTGGCGCTGACTTTGCAGGATAGCCA
GCATATCGCGCAGAAGCTCGGGCTTCTGGTCATGACGCTTGTCGTTTTCA
TACTCGTCGTAAGTGAAGCCCCCCCCCCTCCTCCTCCCCCCTTGAACCCG
TCAACCCACCATTACGTTACTCGTCACCGCAGGGACGATCTCAATCCCTC
GTAGTCGCTGCCACGACGAGGTAGGCAAGCTACAGTCCTCAAAGCACCGC
AAGGGGGGGGGGATAAGTCCTCGTTGGATAGGACTCGATCGGTGTTGTGT
GTCCGCGTACATCGTGGAGTGTTTGCCTTGTGTTGTCATCTCCTTGCCGC
CGCCATGCCACGTGAGATCTCACTCGCCCGGTCGGCTTGATTTTCCTCGT
GAATATTTCCCGTCGTGGATAAGCATCGATGACTCGGGGCGTTCCCTTCC
CCCTGACCCGTCTCGTCCCGTCACTCCTTTTATTTTTGCACGATAACAAC
ACCTAGGCTCCACACAAAAAGTACATCGTGCTTAAACAGGAGGGAAACAC
GGCTAGAGTAGGCTCGCTGGCTTGACGTGTATCTCTCACTCTCCACCCCG
CATGTTCCACTCTTTGAACTGTGCCCTCTCCCCTTTTCCCCCTCGCCACC
ATCTTTACTCTGCAGTTCGTGTGGTTGTCGATCTGGGGTGCCGACGTGGT
GCAGCTGAGCGTGACCTTTGCGTCCTTCCTT
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Coding sequence (CDS) from alignment at F-serratus_M_contig62:662548..664978+

>mRNA_F-serratus_M_contig62.17020.1 ID=mRNA_F-serratus_M_contig62.17020.1|Name=mRNA_F-serratus_M_contig62.17020.1|organism=Fucus serratus male|type=CDS|length=1104bp|location=Sequence derived from alignment at F-serratus_M_contig62:662548..664978+ (Fucus serratus male)
ATGTCGGTTGTGATGGAGGAGTCATTGAGCTGGGCCGACCTAGAGAGAAT
GGATTCGACCGGCGACGATGTCGGTTGTGATGGAGGAGTCATTGAGCTGG
GCCGACCTAGAGAGAATGGATTCGACCGGCGACGAAACCGCCGCTGACAC
TGCGAAAGACGAGAAGAAGGAGCTCGGGGAGGGAATGGCGGCCGATAGTC
ACCGTTCCATGGGCGACAAGCACCACGCCCCGAAGAGACCAGGCGATGAC
GGTGGCAGGAACTCGTCTAGGGGCAGGTCGATATCAACGTCGTCAGATGA
AGAAAACGACGAGAAACAGGAGGTGTTGATGAGGACGACTTTCTGCCCGG
CGCTGCACCCCGACCTCCTGAACGTCGCGTTCAAGATGTTCGACTTCGAC
GACAACGGTACCGTCACCAAAGAGAAACCGCCGCTGACACTGCGAAAGAC
GAGAAGAAGGAGCTCGGGGAGGGAATGGCGGCCGATAGTCACCGTTCCAT
GGGCGACAAGCACCACGCCCCGAAGAGACCAGGCGATGACGGTGGCAGGA
ACTCGTCTAGGGGCAGGTCGATATCAACGTCGTCAGATGAAGAAAACGAC
GAGAAACAGGAGGTGTTGATGAGGACGACTTTCTGCCCGGCGCTGCACCC
CGACCTCCTGAACGTCGCGTTCAAGATGTTCGACTTCGACGACAACGGTA
CCGTCACCAAAGAGGAGATGGTGCTTGGCGTGGTCGGGACGTTCAAAGAC
CACCGGAGCTTGGCGCTGACTTTGCAGGATAGCCAGCATATCGCGCAGAA
GCTCGGGCTTCTGGTCATGACGCTTGTCGTTTTCATACTCGTCGAGATGG
TGCTTGGCGTGGTCGGGACGTTCAAAGACCACCGGAGCTTGGCGCTGACT
TTGCAGGATAGCCAGCATATCGCGCAGAAGCTCGGGCTTCTGGTCATGAC
GCTTGTCGTTTTCATACTCGTCTTCGTGTGGTTGTCGATCTGGGGTGCCG
ACGTGGTGCAGCTGAGCGTGACCTTTGCGTCCTTCCTTTTCGTGTGGTTG
TCGATCTGGGGTGCCGACGTGGTGCAGCTGAGCGTGACCTTTGCGTCCTT
CCTT
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