mRNA_F-serratus_M_contig62.17013.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig62.17013.1
Unique NamemRNA_F-serratus_M_contig62.17013.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig62.17013.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig62contigF-serratus_M_contig62:252381..253148 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size768
Cds size684
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig62.17013.1prot_F-serratus_M_contig62.17013.1Fucus serratus malepolypeptideF-serratus_M_contig62 252383..253066 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931919.7175283-UTR-F-serratus_M_contig62:252380..2523821622931919.7175283-UTR-F-serratus_M_contig62:252380..252382Fucus serratus maleUTRF-serratus_M_contig62 252381..252382 +
1690964057.9146762-UTR-F-serratus_M_contig62:252380..2523821690964057.9146762-UTR-F-serratus_M_contig62:252380..252382Fucus serratus maleUTRF-serratus_M_contig62 252381..252382 +
1622931919.7855933-UTR-F-serratus_M_contig62:253066..2531481622931919.7855933-UTR-F-serratus_M_contig62:253066..253148Fucus serratus maleUTRF-serratus_M_contig62 253067..253148 +
1690964057.9351163-UTR-F-serratus_M_contig62:253066..2531481690964057.9351163-UTR-F-serratus_M_contig62:253066..253148Fucus serratus maleUTRF-serratus_M_contig62 253067..253148 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931919.7670937-CDS-F-serratus_M_contig62:252382..2530661622931919.7670937-CDS-F-serratus_M_contig62:252382..253066Fucus serratus maleCDSF-serratus_M_contig62 252383..253066 +
1690964057.9269798-CDS-F-serratus_M_contig62:252382..2530661690964057.9269798-CDS-F-serratus_M_contig62:252382..253066Fucus serratus maleCDSF-serratus_M_contig62 252383..253066 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig62.17013.1

>prot_F-serratus_M_contig62.17013.1 ID=prot_F-serratus_M_contig62.17013.1|Name=mRNA_F-serratus_M_contig62.17013.1|organism=Fucus serratus male|type=polypeptide|length=228bp
MVMEVGSPSLAWQALKKMVVESTDDAYDRVKREFEHLEMGDHETVSEYFA
RVNIVRMKLERYKVTIPPREIKRIVMKSLTPRFPNETSMLVMKGDFTLED
LELGLARVEKLRSESSGSASTHALAVAHAGNGQTGSGGGGRGRGRQGRRS
GRRQDDGRGHHRQGQQWQQRQQQHQPPAAISQHASQQWQHQQNFYGDRTT
SPTLGAAGEDHLTSSGDRATMVDLDSA*
back to top

mRNA from alignment at F-serratus_M_contig62:252381..253148+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig62.17013.1 ID=mRNA_F-serratus_M_contig62.17013.1|Name=mRNA_F-serratus_M_contig62.17013.1|organism=Fucus serratus male|type=mRNA|length=768bp|location=Sequence derived from alignment at F-serratus_M_contig62:252381..253148+ (Fucus serratus male)
ATATGGTAATGGAAGTCGGGTCGCCGTCGTTAGCTTGGCAGGCGCTAAAG
AAGATGGTCGTAGAATCGACAGACGACGCATACGATCGAGTAAAACGAGA
ATTTGAACATCTTGAGATGGGAGATCACGAGACCGTATCAGAATACTTCG
CACGAGTGAACATTGTTCGGATGAAGCTTGAGAGGTATAAAGTAACAATC
CCCCCACGAGAAATTAAGCGCATTGTCATGAAGAGCCTGACCCCCCGCTT
CCCGAATGAGACGTCCATGCTTGTGATGAAAGGTGATTTTACTCTAGAAG
ACCTGGAGCTCGGGCTGGCTCGTGTGGAGAAGCTGCGATCAGAATCAAGC
GGAAGCGCCTCGACCCACGCGTTAGCCGTTGCTCATGCGGGCAACGGTCA
AACCGGGTCTGGAGGTGGAGGTCGCGGACGAGGGCGGCAAGGCAGGCGAT
CAGGCAGGCGTCAAGACGATGGTCGGGGCCACCATCGACAAGGACAGCAA
TGGCAACAGCGGCAACAGCAGCACCAGCCACCTGCGGCGATATCGCAACA
CGCATCGCAGCAATGGCAACATCAGCAGAATTTTTACGGGGACCGCACCA
CCAGCCCAACTCTCGGAGCAGCTGGGGAAGACCACCTCACCAGCAGCGGC
GATCGCGCCACCATGGTAGACCTCGACAGCGCGTAAGGTGCCAACAGTGT
GGTGAGTTGGAGCATTTCCCCGATGACTGTGTAATAACCACAACCGTGAA
CATGCCCGCACCATCACC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig62:252381..253148+

>mRNA_F-serratus_M_contig62.17013.1 ID=mRNA_F-serratus_M_contig62.17013.1|Name=mRNA_F-serratus_M_contig62.17013.1|organism=Fucus serratus male|type=CDS|length=1368bp|location=Sequence derived from alignment at F-serratus_M_contig62:252381..253148+ (Fucus serratus male)
ATGGTAATGGAAGTCGGGTCGCCGTCGTTAGCTTGGCAGGCGCTAAAGAA
GATGGTCGTAGAATCGACAGACGACGCATACGATCGAGTAAAACGAGAAT
TTGAACATCTTGAGATGGGAGATCACGAGACCGTATCAGAATACTTCGCA
CGAGTGAACATTGTTCGGATGAAGCTTGAGAGGTATAAAGTAACAATCCC
CCCACGAGAAATTAAGCGCATTGTCATGAAGAGCCTGACCCCCCGCTTCC
CGAATGAGACGTCCATGCTTGTGATGAAAGGTGATTTTACTCTAGAAGAC
CTGGAGCTCGGGCTGGCTCGTGTGGAGAAGCTGCGATCAGAATCAAGCGG
AAGCGCCTCGACCCACGCGTTAGCCGTTGCTCATGCGGGCAACGGTCAAA
CCGGGTCTGGAGGTGGAGGTCGCGGACGAGGGCGGCAAGGCAGGCGATCA
GGCAGGCGTCAAGACGATGGTCGGGGCCACCATCGACAAGGACAGCAATG
GCAACAGCGGCAACAGCAGCACCAGCCACCTGCGGCGATATCGCAACACG
CATCGCAGCAATGGCAACATCAGCAGAATTTTTACGGGGACCGCACCACC
AGCCCAACTCTCGGAGCAGCTGGGGAAGACCACCTCACCAGCAGCGGCGA
TCGCGCCACCATGGTAGACCTCGACAGCGCGTAAATGGTAATGGAAGTCG
GGTCGCCGTCGTTAGCTTGGCAGGCGCTAAAGAAGATGGTCGTAGAATCG
ACAGACGACGCATACGATCGAGTAAAACGAGAATTTGAACATCTTGAGAT
GGGAGATCACGAGACCGTATCAGAATACTTCGCACGAGTGAACATTGTTC
GGATGAAGCTTGAGAGGTATAAAGTAACAATCCCCCCACGAGAAATTAAG
CGCATTGTCATGAAGAGCCTGACCCCCCGCTTCCCGAATGAGACGTCCAT
GCTTGTGATGAAAGGTGATTTTACTCTAGAAGACCTGGAGCTCGGGCTGG
CTCGTGTGGAGAAGCTGCGATCAGAATCAAGCGGAAGCGCCTCGACCCAC
GCGTTAGCCGTTGCTCATGCGGGCAACGGTCAAACCGGGTCTGGAGGTGG
AGGTCGCGGACGAGGGCGGCAAGGCAGGCGATCAGGCAGGCGTCAAGACG
ATGGTCGGGGCCACCATCGACAAGGACAGCAATGGCAACAGCGGCAACAG
CAGCACCAGCCACCTGCGGCGATATCGCAACACGCATCGCAGCAATGGCA
ACATCAGCAGAATTTTTACGGGGACCGCACCACCAGCCCAACTCTCGGAG
CAGCTGGGGAAGACCACCTCACCAGCAGCGGCGATCGCGCCACCATGGTA
GACCTCGACAGCGCGTAA
back to top