mRNA_F-serratus_M_contig62.17012.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig62.17012.1
Unique NamemRNA_F-serratus_M_contig62.17012.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig62.17012.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig62contigF-serratus_M_contig62:251770..251976 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size183
Cds size183
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931919.1928256-CDS-F-serratus_M_contig62:251769..2518441622931919.1928256-CDS-F-serratus_M_contig62:251769..251844Fucus serratus maleCDSF-serratus_M_contig62 251770..251844 +
1690964057.702753-CDS-F-serratus_M_contig62:251769..2518441690964057.702753-CDS-F-serratus_M_contig62:251769..251844Fucus serratus maleCDSF-serratus_M_contig62 251770..251844 +
1622931919.210785-CDS-F-serratus_M_contig62:251868..2519761622931919.210785-CDS-F-serratus_M_contig62:251868..251976Fucus serratus maleCDSF-serratus_M_contig62 251869..251976 +
1690964057.7153342-CDS-F-serratus_M_contig62:251868..2519761690964057.7153342-CDS-F-serratus_M_contig62:251868..251976Fucus serratus maleCDSF-serratus_M_contig62 251869..251976 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig62.17012.1prot_F-serratus_M_contig62.17012.1Fucus serratus malepolypeptideF-serratus_M_contig62 251770..251976 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig62.17012.1

>prot_F-serratus_M_contig62.17012.1 ID=prot_F-serratus_M_contig62.17012.1|Name=mRNA_F-serratus_M_contig62.17012.1|organism=Fucus serratus male|type=polypeptide|length=61bp
LNQLILFCVLCIFIFKEASPTPIITVYRTRLALGTYRPSARDINDKDFNR
SRWQSLGANP*
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mRNA from alignment at F-serratus_M_contig62:251770..251976+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig62.17012.1 ID=mRNA_F-serratus_M_contig62.17012.1|Name=mRNA_F-serratus_M_contig62.17012.1|organism=Fucus serratus male|type=mRNA|length=207bp|location=Sequence derived from alignment at F-serratus_M_contig62:251770..251976+ (Fucus serratus male)
CTCAACCAGTTAATATTATTCTGTGTGTTGTGTATCTTCATATTCAAGGA
AGCATCCCCTACTCCCATCATCACCGTCACCTGATTCCTAGAGTTAAAGG
TTTATCGAACACGCTTAGCGTTAGGTACCTATAGACCATCAGCTAGGGAC
ATCAACGACAAGGACTTCAATAGAAGCAGATGGCAGAGTTTAGGAGCGAA
TCCCTAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig62:251770..251976+

>mRNA_F-serratus_M_contig62.17012.1 ID=mRNA_F-serratus_M_contig62.17012.1|Name=mRNA_F-serratus_M_contig62.17012.1|organism=Fucus serratus male|type=CDS|length=366bp|location=Sequence derived from alignment at F-serratus_M_contig62:251770..251976+ (Fucus serratus male)
CTCAACCAGTTAATATTATTCTGTGTGTTGTGTATCTTCATATTCAAGGA
AGCATCCCCTACTCCCATCATCACCCTCAACCAGTTAATATTATTCTGTG
TGTTGTGTATCTTCATATTCAAGGAAGCATCCCCTACTCCCATCATCACC
GTTTATCGAACACGCTTAGCGTTAGGTACCTATAGACCATCAGCTAGGGA
CATCAACGACAAGGACTTCAATAGAAGCAGATGGCAGAGTTTAGGAGCGA
ATCCCTAGGTTTATCGAACACGCTTAGCGTTAGGTACCTATAGACCATCA
GCTAGGGACATCAACGACAAGGACTTCAATAGAAGCAGATGGCAGAGTTT
AGGAGCGAATCCCTAG
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