mRNA_F-serratus_M_contig62.17011.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig62.17011.1
Unique NamemRNA_F-serratus_M_contig62.17011.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig62.17011.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig62contigF-serratus_M_contig62:27003..27531 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size184
Cds size183
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931919.1252124-CDS-F-serratus_M_contig62:27002..271061622931919.1252124-CDS-F-serratus_M_contig62:27002..27106Fucus serratus maleCDSF-serratus_M_contig62 27003..27106 -
1690964057.672067-CDS-F-serratus_M_contig62:27002..271061690964057.672067-CDS-F-serratus_M_contig62:27002..27106Fucus serratus maleCDSF-serratus_M_contig62 27003..27106 -
1622931919.1415687-CDS-F-serratus_M_contig62:27452..275311622931919.1415687-CDS-F-serratus_M_contig62:27452..27531Fucus serratus maleCDSF-serratus_M_contig62 27453..27531 -
1690964057.6830962-CDS-F-serratus_M_contig62:27452..275311690964057.6830962-CDS-F-serratus_M_contig62:27452..27531Fucus serratus maleCDSF-serratus_M_contig62 27453..27531 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig62.17011.1prot_F-serratus_M_contig62.17011.1Fucus serratus malepolypeptideF-serratus_M_contig62 27003..27531 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig62.17011.1

>prot_F-serratus_M_contig62.17011.1 ID=prot_F-serratus_M_contig62.17011.1|Name=mRNA_F-serratus_M_contig62.17011.1|organism=Fucus serratus male|type=polypeptide|length=61bp
YGRVGEGRRNCVRPAAEEERSGRGGQDHVPDWQPRKLLGMVEARSVNVKK
TTTILHDVRR*
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mRNA from alignment at F-serratus_M_contig62:27003..27531-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig62.17011.1 ID=mRNA_F-serratus_M_contig62.17011.1|Name=mRNA_F-serratus_M_contig62.17011.1|organism=Fucus serratus male|type=mRNA|length=529bp|location=Sequence derived from alignment at F-serratus_M_contig62:27003..27531- (Fucus serratus male)
TATGGCCGCGTGGGTGAGGGAAGAAGAAATTGCGTCCGACCAGCGGCAGA
AGAAGAGAGAAGCGGAAGAGGCGGACAAGGTTGAGGTTGCACCTGGGGTG
ACTGTAGCAAGCTTGAGACGTTTTCGAACCGCGTTGATTGGACCAACCCA
AGGACTCCTAAGCGACGTCGATTGTGCCGTTAGTGAAAACTGAAACCCCA
AGAGTACGGAATGCGGTAGATGCTACGCGTTTGGGTGCATGGCTGCGATC
CGGGAGGGTATAGGATGACTCGCGGCTGACTCTTTGCCAAACTCTCTCTC
TCGAATGTCCCTCTTCTATCTTTTTTTTTTCTGGCACGTGCATTTTGTTA
TCCTTGTTCCTTTCTCTTTGTCGTTTTTTTGTGTGTGTTTGATAGATGTT
CCTCTGACCTCTTTCTGTCCAGCAGACCACGTACCGGATTGGCAACCACG
TAAATTACTGGGTATGGTTGAGGCCCGATCGGTTAATGTGAAGAAAACAA
CAACTATATTGCATGATGTGCGTCGTTAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig62:27003..27531-

>mRNA_F-serratus_M_contig62.17011.1 ID=mRNA_F-serratus_M_contig62.17011.1|Name=mRNA_F-serratus_M_contig62.17011.1|organism=Fucus serratus male|type=CDS|length=366bp|location=Sequence derived from alignment at F-serratus_M_contig62:27003..27531- (Fucus serratus male)
TATGGCCGCGTGGGTGAGGGAAGAAGAAATTGCGTCCGACCAGCGGCAGA
AGAAGAGAGAAGCGGAAGAGGCGGACAAGTATGGCCGCGTGGGTGAGGGA
AGAAGAAATTGCGTCCGACCAGCGGCAGAAGAAGAGAGAAGCGGAAGAGG
CGGACAAGACCACGTACCGGATTGGCAACCACGTAAATTACTGGGTATGG
TTGAGGCCCGATCGGTTAATGTGAAGAAAACAACAACTATATTGCATGAT
GTGCGTCGTTAAACCACGTACCGGATTGGCAACCACGTAAATTACTGGGT
ATGGTTGAGGCCCGATCGGTTAATGTGAAGAAAACAACAACTATATTGCA
TGATGTGCGTCGTTAA
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