mRNA_F-serratus_M_contig6198.17009.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6198.17009.1
Unique NamemRNA_F-serratus_M_contig6198.17009.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6198.17009.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6198contigF-serratus_M_contig6198:33094..33403 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size311
Cds size306
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931919.0611966-CDS-F-serratus_M_contig6198:33093..333991622931919.0611966-CDS-F-serratus_M_contig6198:33093..33399Fucus serratus maleCDSF-serratus_M_contig6198 33094..33399 +
1690964057.6525383-CDS-F-serratus_M_contig6198:33093..333991690964057.6525383-CDS-F-serratus_M_contig6198:33093..33399Fucus serratus maleCDSF-serratus_M_contig6198 33094..33399 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931919.077767-UTR-F-serratus_M_contig6198:33399..334031622931919.077767-UTR-F-serratus_M_contig6198:33399..33403Fucus serratus maleUTRF-serratus_M_contig6198 33400..33403 +
1690964057.662418-UTR-F-serratus_M_contig6198:33399..334031690964057.662418-UTR-F-serratus_M_contig6198:33399..33403Fucus serratus maleUTRF-serratus_M_contig6198 33400..33403 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6198.17009.1prot_F-serratus_M_contig6198.17009.1Fucus serratus malepolypeptideF-serratus_M_contig6198 33094..33399 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6198.17009.1

>prot_F-serratus_M_contig6198.17009.1 ID=prot_F-serratus_M_contig6198.17009.1|Name=mRNA_F-serratus_M_contig6198.17009.1|organism=Fucus serratus male|type=polypeptide|length=102bp
RFIACARNHVGFTALQSRGVRISAGLLLVHSNCLAARTTVRLRDDDVSSG
PIAKQLTETGAHGSCVARIIGAEMVQRVCHLYLLHFVDRLPPPSLLGDPR
L*
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mRNA from alignment at F-serratus_M_contig6198:33094..33403+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6198.17009.1 ID=mRNA_F-serratus_M_contig6198.17009.1|Name=mRNA_F-serratus_M_contig6198.17009.1|organism=Fucus serratus male|type=mRNA|length=310bp|location=Sequence derived from alignment at F-serratus_M_contig6198:33094..33403+ (Fucus serratus male)
AGATTCATTGCGTGTGCTCGCAATCATGTTGGTTTTACGGCACTTCAGAG
CAGGGGAGTCAGGATTAGCGCTGGCCTTCTCCTTGTTCACAGCAACTGTC
TTGCCGCCCGTACCACCGTCAGACTCCGTGATGACGATGTCTCTAGTGGC
CCAATCGCGAAGCAGCTGACGGAAACGGGAGCGCATGGCTCCTGCGTTGC
CCGAATCATCGGCGCCGAAATGGTGCAGCGCGTTTGTCACCTCTATCTTC
TTCATTTTGTAGACAGGCTGCCCCCTCCATCGCTGCTTGGTGACCCTCGT
CTCTAGAGCT
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Coding sequence (CDS) from alignment at F-serratus_M_contig6198:33094..33403+

>mRNA_F-serratus_M_contig6198.17009.1 ID=mRNA_F-serratus_M_contig6198.17009.1|Name=mRNA_F-serratus_M_contig6198.17009.1|organism=Fucus serratus male|type=CDS|length=612bp|location=Sequence derived from alignment at F-serratus_M_contig6198:33094..33403+ (Fucus serratus male)
AGATTCATTGCGTGTGCTCGCAATCATGTTGGTTTTACGGCACTTCAGAG
CAGGGGAGTCAGGATTAGCGCTGGCCTTCTCCTTGTTCACAGCAACTGTC
TTGCCGCCCGTACCACCGTCAGACTCCGTGATGACGATGTCTCTAGTGGC
CCAATCGCGAAGCAGCTGACGGAAACGGGAGCGCATGGCTCCTGCGTTGC
CCGAATCATCGGCGCCGAAATGGTGCAGCGCGTTTGTCACCTCTATCTTC
TTCATTTTGTAGACAGGCTGCCCCCTCCATCGCTGCTTGGTGACCCTCGT
CTCTAGAGATTCATTGCGTGTGCTCGCAATCATGTTGGTTTTACGGCACT
TCAGAGCAGGGGAGTCAGGATTAGCGCTGGCCTTCTCCTTGTTCACAGCA
ACTGTCTTGCCGCCCGTACCACCGTCAGACTCCGTGATGACGATGTCTCT
AGTGGCCCAATCGCGAAGCAGCTGACGGAAACGGGAGCGCATGGCTCCTG
CGTTGCCCGAATCATCGGCGCCGAAATGGTGCAGCGCGTTTGTCACCTCT
ATCTTCTTCATTTTGTAGACAGGCTGCCCCCTCCATCGCTGCTTGGTGAC
CCTCGTCTCTAG
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