mRNA_F-serratus_M_contig6196.17007.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_F-serratus_M_contig6196.17007.1
Unique Name	mRNA_F-serratus_M_contig6196.17007.1
Type	mRNA
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))

Homology

[Close]

BLAST of mRNA_F-serratus_M_contig6196.17007.1 vs. uniprot
Match: UPI00106C8F71 (uncharacterized protein LOC114545138 n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106C8F71)

HSP 1 Score: 174 bits (440), Expect = 4.220e-51
Identity = 81/144 (56.25%), Postives = 110/144 (76.39%), Query Frame = 1

Query:    1 CDRCKRDKKQVKSFSSTNDMDPGSVSSQLKGLTQAEKMLIAKGCPVMRVYRLKGGQRGYGGHVVNLAQNNGSFVTNLPRPARDLPIIVVRRQGGEDTHKDRFVRRQRVFNALNWLRESNPFYSDIRIDAENLSLMPDNGSLEDL 432
            C RC+RDKK  K+FS+ NDMDPG+V  QL+GLTQ E+MLI++ CP+M+VYR  GGQRGY GHV+NL Q+  SF+  LP    DLP+++VRRQG ++THKD  VRR +VF A++WL+ +NPF+ DI ID + +  +P+NG  E+L
Sbjct:   36 CYRCQRDKKSPKNFSTGNDMDPGTVPEQLRGLTQVEEMLISRVCPIMQVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPAQVADLPVMIVRRQGADETHKDFTVRRHKVFEAISWLKTNNPFFKDIEIDRDIIQRLPENGVPEEL 179

[Close]

BLAST of mRNA_F-serratus_M_contig6196.17007.1 vs. uniprot
Match: A0A6S7G3B5_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7G3B5_PARCT)

HSP 1 Score: 165 bits (418), Expect = 5.330e-48
Identity = 78/136 (57.35%), Postives = 100/136 (73.53%), Query Frame = 1

Query:    1 CDRCKRDKKQVKSFSSTNDMDPGSVSSQLKGLTQAEKMLIAKGCPVMRVYRLKGGQRGYGGHVVNLAQNNGSFVTNLPRPARDLPIIVVRRQGGEDTHKDRFVRRQRVFNALNWLRESNPFYSDIRIDAENLSLMP 408
            C RCKRDKK  K FS+ NDMDPG+V  QL+GLTQ E+MLI++ CP+MRVYR  GGQRGY GHV+NL Q+  SF+  LP    DLP+++VRR G EDTH+D  VRR +V  A+ WL+ +NPF+ DI ID + +  +P
Sbjct:  163 CYRCKRDKKSPKKFSAENDMDPGTVPEQLRGLTQVEEMLISRVCPIMRVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPSRVADLPVLIVRRHGAEDTHRDFTVRRHKVLEAVLWLKTNNPFFKDIEIDRDVIQSLP 298

[Close]

BLAST of mRNA_F-serratus_M_contig6196.17007.1 vs. uniprot
Match: A0A6S7JXT5_PARCT (Uncharacterized protein n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JXT5_PARCT)

HSP 1 Score: 168 bits (425), Expect = 5.890e-48
Identity = 80/144 (55.56%), Postives = 105/144 (72.92%), Query Frame = 1

Query:    1 CDRCKRDKKQVKSFSSTNDMDPGSVSSQLKGLTQAEKMLIAKGCPVMRVYRLKGGQRGYGGHVVNLAQNNGSFVTNLPRPARDLPIIVVRRQGGEDTHKDRFVRRQRVFNALNWLRESNPFYSDIRIDAENLSLMPDNGSLEDL 432
            C RCKRDKK  K FS+ NDMDPG V  QL+GLTQ E+MLI++ CP+MRVYR  GGQRGY GHV+NL Q+  SF+  LP    DLP+++VRR G EDTH+D  VRR +V  A+ WL+ +NPF+ +I ID + +  +P+NG  ++L
Sbjct:  148 CYRCKRDKKSPKKFSAENDMDPGIVPEQLRGLTQVEEMLISRVCPIMRVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPSRVADLPVLIVRRHGAEDTHRDFTVRRHKVLEAVLWLKTNNPFFKNIEIDRDVIQSLPENGIPDEL 291

[Close]

BLAST of mRNA_F-serratus_M_contig6196.17007.1 vs. uniprot
Match: A0A7D9LMQ1_PARCT (Uncharacterized protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9LMQ1_PARCT)

HSP 1 Score: 168 bits (425), Expect = 6.570e-48
Identity = 80/144 (55.56%), Postives = 105/144 (72.92%), Query Frame = 1

Query:    1 CDRCKRDKKQVKSFSSTNDMDPGSVSSQLKGLTQAEKMLIAKGCPVMRVYRLKGGQRGYGGHVVNLAQNNGSFVTNLPRPARDLPIIVVRRQGGEDTHKDRFVRRQRVFNALNWLRESNPFYSDIRIDAENLSLMPDNGSLEDL 432
            C RCKRDKK  K FS+ NDMDPG V  QL+GLTQ E+MLI++ CP+MRVYR  GGQRGY GHV+NL Q+  SF+  LP    DLP+++VRR G EDTH+D  VRR +V  A+ WL+ +NPF+ +I ID + +  +P+NG  ++L
Sbjct:  137 CYRCKRDKKSPKKFSAENDMDPGIVPEQLRGLTQVEEMLISRVCPIMRVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPSRVADLPVLIVRRHGAEDTHRDFTVRRHKVLEAVLWLKTNNPFFKNIEIDRDVIQSLPENGIPDEL 280

[Close]

BLAST of mRNA_F-serratus_M_contig6196.17007.1 vs. uniprot
Match: UPI00106CBCF8 (uncharacterized protein LOC114518711 n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106CBCF8)

HSP 1 Score: 170 bits (430), Expect = 1.500e-46
Identity = 81/144 (56.25%), Postives = 107/144 (74.31%), Query Frame = 1

Query:    1 CDRCKRDKKQVKSFSSTNDMDPGSVSSQLKGLTQAEKMLIAKGCPVMRVYRLKGGQRGYGGHVVNLAQNNGSFVTNLPRPARDLPIIVVRRQGGEDTHKDRFVRRQRVFNALNWLRESNPFYSDIRIDAENLSLMPDNGSLEDL 432
            C RCKRDKK  K+FS+ NDMDPG V  QL+GLTQ E+MLI++ CP+M+VYR  GGQRGY GHV+NL Q+  SF+  LP    DLP+++VRRQG ++THKD  VRR RV  A+ WL+ +NPF+ DI ID + +  +P+NG  ++L
Sbjct:  322 CYRCKRDKKSPKNFSAGNDMDPGIVPEQLRGLTQVEEMLISRVCPIMQVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPAQVADLPVMIVRRQGADETHKDFTVRRHRVLEAILWLKTNNPFFKDIEIDRDVIQSLPENGIPKEL 465

[Close]

BLAST of mRNA_F-serratus_M_contig6196.17007.1 vs. uniprot
Match: A0A6S7GE38_PARCT (Helitron_like_N domain-containing protein n=3 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7GE38_PARCT)

HSP 1 Score: 168 bits (425), Expect = 3.190e-46
Identity = 80/144 (55.56%), Postives = 105/144 (72.92%), Query Frame = 1

Query:    1 CDRCKRDKKQVKSFSSTNDMDPGSVSSQLKGLTQAEKMLIAKGCPVMRVYRLKGGQRGYGGHVVNLAQNNGSFVTNLPRPARDLPIIVVRRQGGEDTHKDRFVRRQRVFNALNWLRESNPFYSDIRIDAENLSLMPDNGSLEDL 432
            C RCKRDKK  K FS+ NDMDPG V  QL+GLTQ E+MLI++ CP+MRVYR  GGQRGY GHV+NL Q+  SF+  LP    DLP+++VRR G EDTH+D  VRR +V  A+ WL+ +NPF+ +I ID + +  +P+NG  ++L
Sbjct:  148 CYRCKRDKKSPKKFSAENDMDPGIVPEQLRGLTQVEEMLISRVCPIMRVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPSRVADLPVLIVRRHGAEDTHRDFTVRRHKVLEAVLWLKTNNPFFKNIEIDRDVIQSLPENGIPDEL 291

[Close]

BLAST of mRNA_F-serratus_M_contig6196.17007.1 vs. uniprot
Match: A0A7D9I697_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9I697_PARCT)

HSP 1 Score: 164 bits (414), Expect = 4.520e-46
Identity = 77/139 (55.40%), Postives = 102/139 (73.38%), Query Frame = 1

Query:    1 CDRCKRDKKQVKSFSSTNDMDPGSVSSQLKGLTQAEKMLIAKGCPVMRVYRLKGGQRGYGGHVVNLAQNNGSFVTNLPRPARDLPIIVVRRQGGEDTHKDRFVRRQRVFNALNWLRESNPFYSDIRIDAENLSLMPDNG 417
            C RCKRDKK  K FS+ NDMDPG+V  QL+GLTQ E+MLI++ CP+MRVYR  GGQRGY GHV+NL Q+  SF+  LP    DLP+++VRR G ED H+D  VRR +V   + WL+ +NPF+ +I+ID + +  +P+NG
Sbjct:  251 CYRCKRDKKLPKKFSAKNDMDPGTVPEQLRGLTQVEEMLISRVCPIMRVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPSRVADLPVLIVRRHGAEDAHQDFTVRRHKVLEDVLWLKTNNPFFKNIKIDRDVIQSLPENG 389

[Close]

BLAST of mRNA_F-serratus_M_contig6196.17007.1 vs. uniprot
Match: A0A7D9LY68_PARCT (Helitron_like_N domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9LY68_PARCT)

HSP 1 Score: 167 bits (424), Expect = 5.080e-46
Identity = 80/144 (55.56%), Postives = 105/144 (72.92%), Query Frame = 1

Query:    1 CDRCKRDKKQVKSFSSTNDMDPGSVSSQLKGLTQAEKMLIAKGCPVMRVYRLKGGQRGYGGHVVNLAQNNGSFVTNLPRPARDLPIIVVRRQGGEDTHKDRFVRRQRVFNALNWLRESNPFYSDIRIDAENLSLMPDNGSLEDL 432
            C RCKRDK+  K FS+ NDMDPG V  QL+GLTQ E+MLI++ CP+MRVYR  GGQRGY GHV+NL Q+  SF+  LP    DLP+++VRR G EDTH D  VRR +VF A+ WL+ +NPF+ +I ID + +  +P+NG  ++L
Sbjct:  163 CYRCKRDKRSPKKFSAENDMDPGIVPEQLRGLTQVEEMLISRVCPIMRVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPSRVADLPVLIVRRHGAEDTHLDFTVRRHKVFEAVLWLKTNNPFFKNIEIDRDVIQSLPENGIPDEL 306

[Close]

BLAST of mRNA_F-serratus_M_contig6196.17007.1 vs. uniprot
Match: A0A7D9LNP2_PARCT (Uncharacterized protein n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9LNP2_PARCT)

HSP 1 Score: 167 bits (423), Expect = 5.250e-46
Identity = 79/139 (56.83%), Postives = 102/139 (73.38%), Query Frame = 1

Query:    1 CDRCKRDKKQVKSFSSTNDMDPGSVSSQLKGLTQAEKMLIAKGCPVMRVYRLKGGQRGYGGHVVNLAQNNGSFVTNLPRPARDLPIIVVRRQGGEDTHKDRFVRRQRVFNALNWLRESNPFYSDIRIDAENLSLMPDNG 417
            C RCKRDKK  K FS+ NDMDPG V  QL+GLTQ E+MLI++ CP+MRVYR  GGQRGY GHV+NL Q+  SF+  LP    DLP+++VRR G EDTH+D  VRR +V  A+ WL+ +NPF+ +I ID + +  +P+NG
Sbjct:  305 CYRCKRDKKSPKKFSAENDMDPGIVPEQLRGLTQVEEMLISRVCPIMRVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPSRVADLPVLIVRRHGAEDTHRDFTVRRHKVLEAVLWLKTNNPFFKNIEIDRDVIQSLPENG 443

[Close]

BLAST of mRNA_F-serratus_M_contig6196.17007.1 vs. uniprot
Match: UPI00106D8CF5 (uncharacterized protein LOC114518658 n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106D8CF5)

HSP 1 Score: 169 bits (427), Expect = 6.120e-46
Identity = 80/144 (55.56%), Postives = 107/144 (74.31%), Query Frame = 1

Query:    1 CDRCKRDKKQVKSFSSTNDMDPGSVSSQLKGLTQAEKMLIAKGCPVMRVYRLKGGQRGYGGHVVNLAQNNGSFVTNLPRPARDLPIIVVRRQGGEDTHKDRFVRRQRVFNALNWLRESNPFYSDIRIDAENLSLMPDNGSLEDL 432
            C RC+RDKK  K+FS+ NDMDPG V  QL+GLTQ E+MLI++ CP+M+VYR  GGQRGY GHV+NL Q+  SF+  LP    DLP+++VRR+G + THKD  VRR +VF A+ WL+ +NPF+ DI ID + +  +P+NG  E+L
Sbjct:  242 CYRCQRDKKSPKNFSAGNDMDPGIVPEQLRGLTQVEEMLISRVCPIMQVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPAQVADLPVMIVRRRGADQTHKDFTVRRHKVFEAILWLKTNNPFFKDIEIDRDVIQSLPENGIPEEL 385

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig6196.17007.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig6196.17007.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
UPI00106C8F71	4.220e-51	56.25	uncharacterized protein LOC114545138 n=1 Tax=Dendr...	[more]
A0A6S7G3B5_PARCT	5.330e-48	57.35	Uncharacterized protein n=1 Tax=Paramuricea clavat...	[more]
A0A6S7JXT5_PARCT	5.890e-48	55.56	Uncharacterized protein n=2 Tax=Paramuricea clavat...	[more]
A0A7D9LMQ1_PARCT	6.570e-48	55.56	Uncharacterized protein (Fragment) n=1 Tax=Paramur...	[more]
UPI00106CBCF8	1.500e-46	56.25	uncharacterized protein LOC114518711 n=1 Tax=Dendr...	[more]
A0A6S7GE38_PARCT	3.190e-46	55.56	Helitron_like_N domain-containing protein n=3 Tax=...	[more]
A0A7D9I697_PARCT	4.520e-46	55.40	Uncharacterized protein n=1 Tax=Paramuricea clavat...	[more]
A0A7D9LY68_PARCT	5.080e-46	55.56	Helitron_like_N domain-containing protein (Fragmen...	[more]
A0A7D9LNP2_PARCT	5.250e-46	56.83	Uncharacterized protein n=2 Tax=Paramuricea clavat...	[more]
UPI00106D8CF5	6.120e-46	55.56	uncharacterized protein LOC114518658 n=1 Tax=Dendr...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig6196	contig	F-serratus_M_contig6196:16662..17093 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-19
OGS1.0 of Fucus serratus male	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Metazoa
Seed ortholog score	128.6
Seed ortholog evalue	2.3e-27
Seed eggNOG ortholog	400682.PAC_15700047
Hectar predicted targeting category	other localisation
EggNOG OGs	2CC8B@1,2S3BW@2759,3A3QP@33154,3C1YH@33208
Best tax level	Metazoa
Best eggNOG OG	NA\|NA\|NA
Exons	1
Model size	432
Cds size	432
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622931918.9462552-CDS-F-serratus_M_contig6196:16661..17093	1622931918.9462552-CDS-F-serratus_M_contig6196:16661..17093	Fucus serratus male	CDS	F-serratus_M_contig6196 16662..17093 -
1690964057.6122985-CDS-F-serratus_M_contig6196:16661..17093	1690964057.6122985-CDS-F-serratus_M_contig6196:16661..17093	Fucus serratus male	CDS	F-serratus_M_contig6196 16662..17093 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig6196.17007.1	prot_F-serratus_M_contig6196.17007.1	Fucus serratus male	polypeptide	F-serratus_M_contig6196 16662..17093 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at F-serratus_M_contig6196:16662..17093-
coding sequence from alignment at F-serratus_M_contig6196:16662..17093-

protein sequence of mRNA_F-serratus_M_contig6196.17007.1

>prot_F-serratus_M_contig6196.17007.1 ID=prot_F-serratus_M_contig6196.17007.1|Name=mRNA_F-serratus_M_contig6196.17007.1|organism=Fucus serratus male|type=polypeptide|length=144bp
CDRCKRDKKQVKSFSSTNDMDPGSVSSQLKGLTQAEKMLIAKGCPVMRVY
RLKGGQRGYGGHVVNLAQNNGSFVTNLPRPARDLPIIVVRRQGGEDTHKD
RFVRRQRVFNALNWLRESNPFYSDIRIDAENLSLMPDNGSLEDL

mRNA from alignment at F-serratus_M_contig6196:16662..17093-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_F-serratus_M_contig6196.17007.1 ID=mRNA_F-serratus_M_contig6196.17007.1|Name=mRNA_F-serratus_M_contig6196.17007.1|organism=Fucus serratus male|type=mRNA|length=432bp|location=Sequence derived from alignment at F-serratus_M_contig6196:16662..17093- (Fucus serratus male)
TGTGATCGCTGCAAGCGCGACAAAAAACAGGTCAAGTCATTTTCTTCTAC
CAACGACATGGACCCTGGATCTGTATCCAGCCAACTCAAGGGTCTCACTC
AGGCCGAGAAGATGCTAATCGCCAAAGGCTGTCCCGTCATGCGTGTCTAT
CGCCTCAAAGGGGGACAGCGAGGGTACGGCGGTCACGTTGTAAACTTGGC
GCAGAATAACGGTAGTTTCGTCACCAATCTGCCTCGGCCTGCTAGGGATC
TTCCCATTATTGTGGTGCGACGTCAAGGCGGGGAGGATACACACAAAGAT
CGTTTCGTGCGCCGGCAGAGGGTCTTCAACGCACTCAACTGGCTCCGAGA
AAGTAACCCATTCTACAGCGATATTCGCATCGACGCGGAGAACCTGAGTT
TGATGCCGGATAACGGTTCCCTGGAAGACCTA

Coding sequence (CDS) from alignment at F-serratus_M_contig6196:16662..17093-

>mRNA_F-serratus_M_contig6196.17007.1 ID=mRNA_F-serratus_M_contig6196.17007.1|Name=mRNA_F-serratus_M_contig6196.17007.1|organism=Fucus serratus male|type=CDS|length=864bp|location=Sequence derived from alignment at F-serratus_M_contig6196:16662..17093- (Fucus serratus male)
TGTGATCGCTGCAAGCGCGACAAAAAACAGGTCAAGTCATTTTCTTCTAC
CAACGACATGGACCCTGGATCTGTATCCAGCCAACTCAAGGGTCTCACTC
AGGCCGAGAAGATGCTAATCGCCAAAGGCTGTCCCGTCATGCGTGTCTAT
CGCCTCAAAGGGGGACAGCGAGGGTACGGCGGTCACGTTGTAAACTTGGC
GCAGAATAACGGTAGTTTCGTCACCAATCTGCCTCGGCCTGCTAGGGATC
TTCCCATTATTGTGGTGCGACGTCAAGGCGGGGAGGATACACACAAAGAT
CGTTTCGTGCGCCGGCAGAGGGTCTTCAACGCACTCAACTGGCTCCGAGA
AAGTAACCCATTCTACAGCGATATTCGCATCGACGCGGAGAACCTGAGTT
TGATGCCGGATAACGGTTCCCTGGAAGACCTATGTGATCGCTGCAAGCGC
GACAAAAAACAGGTCAAGTCATTTTCTTCTACCAACGACATGGACCCTGG
ATCTGTATCCAGCCAACTCAAGGGTCTCACTCAGGCCGAGAAGATGCTAA
TCGCCAAAGGCTGTCCCGTCATGCGTGTCTATCGCCTCAAAGGGGGACAG
CGAGGGTACGGCGGTCACGTTGTAAACTTGGCGCAGAATAACGGTAGTTT
CGTCACCAATCTGCCTCGGCCTGCTAGGGATCTTCCCATTATTGTGGTGC
GACGTCAAGGCGGGGAGGATACACACAAAGATCGTTTCGTGCGCCGGCAG
AGGGTCTTCAACGCACTCAACTGGCTCCGAGAAAGTAACCCATTCTACAG
CGATATTCGCATCGACGCGGAGAACCTGAGTTTGATGCCGGATAACGGTT
CCCTGGAAGACCTA