mRNA_F-serratus_M_contig6195.17005.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6195.17005.1
Unique NamemRNA_F-serratus_M_contig6195.17005.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig6195.17005.1 vs. uniprot
Match: D7G2Z8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Z8_ECTSI)

HSP 1 Score: 150 bits (378), Expect = 7.720e-39
Identity = 81/163 (49.69%), Postives = 107/163 (65.64%), Query Frame = 1
Query:   16 LAVLGGLSVIMKGGNITFVENQAVVAGGGVSISAPGEGPTFTNASFISNYAEVAGGVFITGSGTSFDPDD-GELSAAFKKCRFIGNKAGATGGAIESATGAAAITNSVFKGNKAGVGGALRLAGASSVDGCTFEDNISDLHGGQAISWIGYNLEIKSCSFRNN 501
            LA+LGGLSV +   N  FV N A VAGG + +S    GPTF N S +SN A+V G + + GSGTSF+P+D       F++CRF  N+A ATGGA+++A G     NSVF+GN AG GGALRLAG + V+ C+F +N+SD  GG A+S IG+   + + SF  N
Sbjct:  296 LALLGGLSVTIGTENTVFVGNTAAVAGGAIFVSGTAVGPTFVNISLVSNSAQVGGAISLIGSGTSFNPEDYTPAPTTFEQCRFTSNRAIATGGAVDTAAGQDKFVNSVFEGNTAGTGGALRLAGTAEVNNCSFVENVSDDGGGAAVSNIGFVSSVSNLSFSRN 458          
BLAST of mRNA_F-serratus_M_contig6195.17005.1 vs. uniprot
Match: D7FHH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHH1_ECTSI)

HSP 1 Score: 130 bits (327), Expect = 5.570e-32
Identity = 77/167 (46.11%), Postives = 106/167 (63.47%), Query Frame = 1
Query:    4 NGGGLAVLGGLSVIMKGGNITFVENQAVVAGGGVSISAPGEGPTFTNASFISNYAEVAGGVFITGSGT-SFDPDDGELSAAFKKCRFIGNKAGATGGAIESATGAAAITNSVFKGNKAGVGGALRLAGASSVDGCTFEDNISDLHGGQAISWIGYNLEIKSCSFRNN 501
            NGG LA+LGGLS+ +  G  +FV+N A +AGG V +S    GPTF++  F SN A+V G V   GSG      +D  L   F +CRF  N+A ATGGA++SA+G     ++VF+GN+A  GGALRLAG +S+  C+F +N+SD   G A+S +G   EI + +F  N
Sbjct:  335 NGGALALLGGLSISVNTGETSFVDNSANLAGGAVYVSDTAIGPTFSDVIFDSNSAQVGGAVSSLGSGNVKGGENDQLLPTTFSRCRFTFNRATATGGAVDSASGQDLFEDTVFRGNQAVTGGALRLAGRASLVNCSFVENLSDDGEGAAVSNVGVISEISNTTFSGN 501          
BLAST of mRNA_F-serratus_M_contig6195.17005.1 vs. uniprot
Match: D7FHG7_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHG7_ECTSI)

HSP 1 Score: 129 bits (325), Expect = 1.100e-31
Identity = 78/167 (46.71%), Postives = 104/167 (62.28%), Query Frame = 1
Query:    4 NGGGLAVLGGLSVIMKGGNITFVENQAVVAGGGVSISAPGEGPTFTNASFISNYAEVAGGVFITGSGT-SFDPDDGELSAAFKKCRFIGNKAGATGGAIESATGAAAITNSVFKGNKAGVGGALRLAGASSVDGCTFEDNISDLHGGQAISWIGYNLEIKSCSFRNN 501
            NGG LA+LGGLS+ +      FV+N A +AGG V +S    GPTF++  F SN A+V G V   GSG      +D  L   F +CRF  N+A ATGGA++SA+G     ++VF+GN+A  GGALRLAG +S+  C+F +NISD   G A+S +G   EI + SF  N
Sbjct: 2248 NGGALALLGGLSISVNTEETNFVDNSADLAGGAVYVSDTAIGPTFSDVIFDSNSAQVGGAVSALGSGNVKGGENDQLLPTTFSRCRFTFNRATATGGAVDSASGQDLFEDTVFRGNQAVTGGALRLAGRASLVNCSFVENISDEGEGAAVSNVGVISEISNTSFSGN 2414          
BLAST of mRNA_F-serratus_M_contig6195.17005.1 vs. uniprot
Match: D8LSC0_ECTSI (Polymorphic Outer membrane protein G/I family n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LSC0_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 3.710e-31
Identity = 75/169 (44.38%), Postives = 102/169 (60.36%), Query Frame = 1
Query:    4 NGGGLAVLGGLSVIMK-GGNITFVENQAVVAGGGVSISAPGEGPTFTNASFISNYAEVAGGVFITGSGTSFDPDDGELS--AAFKKCRFIGNKAGATGGAIESATGAAAITNSVFKGNKAGVGGALRLAGASSVDGCTFEDNISDLHGGQAISWIGYNLEIKSCSFRNN 501
            NGG + +LG   +++    ++ F EN A VAGG V +S  G GP F N +F SN A+V G V + GSG S    D E      F++C F+GN+A ATGGAI+SA G     ++ F+ N AG GGALRLAG +S++ C+F +N SD  GG A+S IG     ++ SF  N
Sbjct:  924 NGGAVTLLGACDLVVNPAASVRFTENAAAVAGGAVFVSGAGAGPAFANTTFTSNSAQVGGAVAVFGSGNSKGVADIEPPNPTTFERCWFVGNRATATGGAIDSAAGHDYFVDTTFEDNAAGTGGALRLAGTASINSCSFVENFSDDEGGAAVSNIGTVESTENISFSAN 1092          
BLAST of mRNA_F-serratus_M_contig6195.17005.1 vs. uniprot
Match: D8LIY0_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIY0_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 1.100e-29
Identity = 73/169 (43.20%), Postives = 104/169 (61.54%), Query Frame = 1
Query:    4 NGGGLAVLGGLSVIMKGG-NITFVENQAVVAGGGVSISAPGEGPTFTNASFISNYAEVAGGVFITGSGTSFDPDDGELS--AAFKKCRFIGNKAGATGGAIESATGAAAITNSVFKGNKAGVGGALRLAGASSVDGCTFEDNISDLHGGQAISWIGYNLEIKSCSFRNN 501
            NGGG+A+ GG ++++     I+F+EN A V+GG V +S+ G G  F   SF+SN A++ G V   GSG S   +D E      F +CRF+GN+A ATGGAI++A G     ++ F+ N AG GGALRLAG +S+  C+F +N S+  GG A+S IG     +  +F  N
Sbjct:  733 NGGGMALYGGCALVIDTEMGISFIENTAAVSGGAVFVSSAGTGLAFPTTSFVSNSAQIGGAVATFGSGGSKGVEDIEPPNPTTFDRCRFVGNRATATGGAIDTAAGYDFFVDTTFEDNAAGTGGALRLAGTASIINCSFVENYSNDGGGAAVSNIGIVSSAEKINFSGN 901          
BLAST of mRNA_F-serratus_M_contig6195.17005.1 vs. uniprot
Match: D7FTI5_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTI5_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 1.330e-28
Identity = 68/148 (45.95%), Postives = 89/148 (60.14%), Query Frame = 1
Query:   58 NITFVENQAVVAGGGVSISAPGEGPTFTNASFISNYAEVAGGVFITGSGTSFDPDDGELSAAFKKCRFIGNKAGATGGAIESATGAAAITNSVFKGNKAGVGGALRLAGASSVDGCTFEDNISDLHGGQAISWIGYNLEIKSCSFRNN 501
            +I+FV N A VAGG + +S    GP FT  +F SN AE+ G V + G G   +P  G+    F +CRF+ N+  +TGGAIESA G  A   S+F+GN AG GGALRLAGA+    C+F  N +D   G A+S IGY   ++S  F  N
Sbjct:  956 DISFVGNSAGVAGGAIFLSGVDTGPIFTEVNFTSNVAEIGGAVSLFGCG--IEPSGGDNPTTFDRCRFVDNQGASTGGAIESAAGKDAFNGSIFEGNSAGTGGALRLAGAAYFFNCSFVGNTADEGEGAAVSNIGYISAVESNFFSGN 1101          
BLAST of mRNA_F-serratus_M_contig6195.17005.1 vs. uniprot
Match: A0A6H5KR67_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR67_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 2.750e-27
Identity = 70/166 (42.17%), Postives = 99/166 (59.64%), Query Frame = 1
Query:    4 NGGGLAVLGGLSVIMKGGNITFVENQAVVAGGGVSISAPGEGPTFTNASFISNYAEVAGGVFITGSGTSFDPDDGELSAAFKKCRFIGNKAGATGGAIESATGAAAITNSVFKGNKAGVGGALRLAGASSVDGCTFEDNISDLHGGQAISWIGYNLEIKSCSFRNN 501
            NGG LA+LG LS+ +     +FV+N A +AGG V +S    GPTF++  F SN+A V G +               L   F +CRF  N+  ATGGA++SA+G     ++VF+GN+A  GGALRLAG +S++ C+F +N+SD   G A+S +G   EI + SF  N
Sbjct:  345 NGGALALLGELSISVNTEESSFVDNSADLAGGTVYVSDTAIGPTFSDVIFDSNFAHVGGAL---------------LPTTFSRCRFTYNRETATGGAVDSASGQDLFEDTVFRGNQAVTGGALRLAGRASLENCSFVENLSDEGEGAAVSNVGIISEISNTSFSGN 495          
BLAST of mRNA_F-serratus_M_contig6195.17005.1 vs. uniprot
Match: A0A6H5K3R8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3R8_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 3.680e-27
Identity = 67/138 (48.55%), Postives = 88/138 (63.77%), Query Frame = 1
Query:   22 VLGGLSVIMKGGNITFVENQAVVAGGGVSISAPGEGPTFTNASFISNYAEVAGGVFITGSGTSFDPDD-GELSAAFKKCRFIGNKAGATGGAIESATGAAAITNSVFKGNKAGVGGALRLAGASSVDGCTFEDNISDL 432
            +LGGLSV +   N  FV N A VAGG V +S+   GPTF N S ISN+A+V G + + GSGTSF+P+D       F +CRF+ N+A ATGG +++ATG   + NSVF+ N AG  GALRLAG +      FE+   D+
Sbjct:   82 LLGGLSVAIGTENAVFVGNTAAVAGGAVFVSSTAIGPTFVNVSLISNWAQVGGAISLIGSGTSFNPEDYTPAPTTFDQCRFLSNRAIATGGTVDTATGQDRVVNSVFEDNTAGTDGALRLAGIAEGMFLEFEEVNKDV 219          
BLAST of mRNA_F-serratus_M_contig6195.17005.1 vs. uniprot
Match: D7FTL7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTL7_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 1.830e-26
Identity = 73/168 (43.45%), Postives = 92/168 (54.76%), Query Frame = 1
Query:    4 NGGGLAVLGGLSVIMKGGNITFVENQAVVAGGGVSISAPGEGPTFTNASFISNYAEVAGGVFITGSGT--SFDPDDGELSAAFKKCRFIGNKAGATGGAIESATGAAAITNSVFKGNKAGVGGALRLAGASSVDGCTFEDNISDLHGGQAISWIGYNLEIKSCSFRNN 501
            +GGGLA   GLSV +    +TF  N A VAGG V +S  G G  F               V I GSG    F   +      F +C F+GN+A ATGGA ESA G  A   +VF GNKAG GGALR+AG +SV+ C+F DN+SD   G A+S IG+  ++    F +N
Sbjct:  541 SGGGLAAFDGLSVDIDTAGVTFSGNAAEVAGGAVFVSGAGVGFVFXXXXXXXXXXXXXXAVSIVGSGNLKGFFDLEWPSPTTFDRCSFVGNQASATGGAFESAAGQDAFVGNVFVGNKAGTGGALRMAGTASVENCSFVDNVSDDGEGAALSNIGFISKMAHIYFSDN 708          
BLAST of mRNA_F-serratus_M_contig6195.17005.1 vs. uniprot
Match: A0A6H5K1P8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1P8_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 4.680e-26
Identity = 66/148 (44.59%), Postives = 86/148 (58.11%), Query Frame = 1
Query:   58 NITFVENQAVVAGGGVSISAPGEGPTFTNASFISNYAEVAGGVFITGSGTSFDPDDGELSAAFKKCRFIGNKAGATGGAIESATGAAAITNSVFKGNKAGVGGALRLAGASSVDGCTFEDNISDLHGGQAISWIGYNLEIKSCSFRNN 501
            +I+FV N A VAGG + +S    GP FT  +F SN AE+ G V     G   +P   +    F +CRF+ N+  +TGGAIESA G  A   S+F+GN AG GGALRLAG+     CTF  N +D   G A+S IGY  E+++  F  N
Sbjct:  682 DISFVGNSAGVAGGAIFLSGVDTGPIFTEVNFTSNVAEIGGAVSSFRCG--IEPSGVDNPTTFDRCRFVDNQGASTGGAIESAAGKDAFNGSIFEGNSAGTGGALRLAGSEYFFNCTFVGNTADDGEGAAVSNIGYISEMENTFFSGN 827          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6195.17005.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D7G2Z8_ECTSI7.720e-3949.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FHH1_ECTSI5.570e-3246.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FHG7_ECTSI1.100e-3146.71LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LSC0_ECTSI3.710e-3144.38Polymorphic Outer membrane protein G/I family n=3 ... [more]
D8LIY0_ECTSI1.100e-2943.20Polymorphic Outer membrane protein G/I family n=1 ... [more]
D7FTI5_ECTSI1.330e-2845.95Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
A0A6H5KR67_9PHAE2.750e-2742.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3R8_9PHAE3.680e-2748.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTL7_ECTSI1.830e-2643.45Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5K1P8_9PHAE4.680e-2644.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6195contigF-serratus_M_contig6195:12097..12597 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score148.3
Seed ortholog evalue3.2e-33
Seed eggNOG ortholog2880.D7G2Z8
Hectar predicted targeting categoryother localisation
EggNOG OGs2BFIX@1,2S176@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size501
Cds size501
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931918.7946415-CDS-F-serratus_M_contig6195:12096..125971622931918.7946415-CDS-F-serratus_M_contig6195:12096..12597Fucus serratus maleCDSF-serratus_M_contig6195 12097..12597 +
1690964057.5824234-CDS-F-serratus_M_contig6195:12096..125971690964057.5824234-CDS-F-serratus_M_contig6195:12096..12597Fucus serratus maleCDSF-serratus_M_contig6195 12097..12597 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6195.17005.1prot_F-serratus_M_contig6195.17005.1Fucus serratus malepolypeptideF-serratus_M_contig6195 12097..12597 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6195.17005.1

>prot_F-serratus_M_contig6195.17005.1 ID=prot_F-serratus_M_contig6195.17005.1|Name=mRNA_F-serratus_M_contig6195.17005.1|organism=Fucus serratus male|type=polypeptide|length=167bp
SNGGGLAVLGGLSVIMKGGNITFVENQAVVAGGGVSISAPGEGPTFTNAS
FISNYAEVAGGVFITGSGTSFDPDDGELSAAFKKCRFIGNKAGATGGAIE
SATGAAAITNSVFKGNKAGVGGALRLAGASSVDGCTFEDNISDLHGGQAI
SWIGYNLEIKSCSFRNN
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mRNA from alignment at F-serratus_M_contig6195:12097..12597+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6195.17005.1 ID=mRNA_F-serratus_M_contig6195.17005.1|Name=mRNA_F-serratus_M_contig6195.17005.1|organism=Fucus serratus male|type=mRNA|length=501bp|location=Sequence derived from alignment at F-serratus_M_contig6195:12097..12597+ (Fucus serratus male)
TCGAACGGCGGGGGGTTAGCGGTTTTGGGAGGACTTTCTGTTATAATGAA AGGTGGGAACATTACCTTCGTCGAGAATCAAGCGGTAGTTGCTGGAgGGG GCGTTTCCATCTCCGCTCCCGGCGAGGGTCCAACGTTCACAAATGCGAGC TTTATATCTAACTACGCAGAAGTCGCTGGCGGTGTGTTTATCACTGGGAG TGGAACGTCATTCGACCCTGATGACGGGGAGCTATCTGCAGCTTTTAAAA AATGTAGATTCATTGGCAACAAAGCAGGTGCGACAGGAGGGGCCATCGAG AGCGCGACTGGCGCAGCTGCCATTACAAACAGTGTTTTCAAAGGCAACAA GGCTGGGGTGGGGGGCGCTCTGAGGCTTGCCGGTGCCTCGTCCGTGGATG GGTGCACATTCGAAGACAATATTTCGGACCTGCACGGCGGACAGGCAATA TCTTGGATCGGATATAATTTGGAGATTAAAAGCTGCTCATTCCGCAACAA C
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Coding sequence (CDS) from alignment at F-serratus_M_contig6195:12097..12597+

>mRNA_F-serratus_M_contig6195.17005.1 ID=mRNA_F-serratus_M_contig6195.17005.1|Name=mRNA_F-serratus_M_contig6195.17005.1|organism=Fucus serratus male|type=CDS|length=1002bp|location=Sequence derived from alignment at F-serratus_M_contig6195:12097..12597+ (Fucus serratus male)
TCGAACGGCGGGGGGTTAGCGGTTTTGGGAGGACTTTCTGTTATAATGAA
AGGTGGGAACATTACCTTCGTCGAGAATCAAGCGGTAGTTGCTGGAgGGG
GCGTTTCCATCTCCGCTCCCGGCGAGGGTCCAACGTTCACAAATGCGAGC
TTTATATCTAACTACGCAGAAGTCGCTGGCGGTGTGTTTATCACTGGGAG
TGGAACGTCATTCGACCCTGATGACGGGGAGCTATCTGCAGCTTTTAAAA
AATGTAGATTCATTGGCAACAAAGCAGGTGCGACAGGAGGGGCCATCGAG
AGCGCGACTGGCGCAGCTGCCATTACAAACAGTGTTTTCAAAGGCAACAA
GGCTGGGGTGGGGGGCGCTCTGAGGCTTGCCGGTGCCTCGTCCGTGGATG
GGTGCACATTCGAAGACAATATTTCGGACCTGCACGGCGGACAGGCAATA
TCTTGGATCGGATATAATTTGGAGATTAAAAGCTGCTCATTCCGCAACAA
CTCGAACGGCGGGGGGTTAGCGGTTTTGGGAGGACTTTCTGTTATAATGA
AAGGTGGGAACATTACCTTCGTCGAGAATCAAGCGGTAGTTGCTGGAgGG
GGCGTTTCCATCTCCGCTCCCGGCGAGGGTCCAACGTTCACAAATGCGAG
CTTTATATCTAACTACGCAGAAGTCGCTGGCGGTGTGTTTATCACTGGGA
GTGGAACGTCATTCGACCCTGATGACGGGGAGCTATCTGCAGCTTTTAAA
AAATGTAGATTCATTGGCAACAAAGCAGGTGCGACAGGAGGGGCCATCGA
GAGCGCGACTGGCGCAGCTGCCATTACAAACAGTGTTTTCAAAGGCAACA
AGGCTGGGGTGGGGGGCGCTCTGAGGCTTGCCGGTGCCTCGTCCGTGGAT
GGGTGCACATTCGAAGACAATATTTCGGACCTGCACGGCGGACAGGCAAT
ATCTTGGATCGGATATAATTTGGAGATTAAAAGCTGCTCATTCCGCAACA
AC
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