mRNA_F-serratus_M_contig619.17003.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig619.17003.1
Unique NamemRNA_F-serratus_M_contig619.17003.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig619.17003.1 vs. uniprot
Match: A0A6H5K0I6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0I6_9PHAE)

HSP 1 Score: 150 bits (379), Expect = 2.020e-36
Identity = 101/181 (55.80%), Postives = 119/181 (65.75%), Query Frame = 2 
Query:   59 YVACVPVVERGGGRSMIGVLKA-------WR---WRGNE--RDPRKLARFSSPFASGEMAALGVVAGHAAAALRRLNHEPIQRQ--------GENDSASEKKQETAAMKEEVDSLREAMGQLSKSARGLVRQRDDARAELARAKGTLRRMVPALREVHDRQLGFRHYHDLIVNMSRRVLQE 541
            +VAC+PV    GG++M+GVLKA       WR    RG+E  R P K       F+ GEMAAL VVAG AAAALRR+     +R+           D   E ++   A+KEE+  LREAM  LS SA+GL RQRD+ARA LARAKGTLRRMVPALRE  DRQLGFRHYHDLIVNMS+ VLQ+
Sbjct: 1062 FVACLPVACGDGGQAMMGVLKASESWLLAWREQQHRGDEGHRPPDK------GFSGGEMAALAVVAGQAAAALRRVGAAASEREEVLQELDAXXADRVDETQKREEAVKEEMKHLREAMEHLSGSAKGLARQRDEARAALARAKGTLRRMVPALREARDRQLGFRHYHDLIVNMSKNVLQD 1236
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BLAST of mRNA_F-serratus_M_contig619.17003.1 vs. uniprot
Match: D7FQ01_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ01_ECTSI)

HSP 1 Score: 130 bits (328), Expect = 9.000e-30
Identity = 114/284 (40.14%), Postives = 133/284 (46.83%), Query Frame = 2 
Query:  182 FASGEMAALGVVAGHAAAALRRLNHEPIQRQ--------GENDSASEKKQETAAMKEEVDSLREAMGQLSKSARGLVRQRDDARAELARAKGTLRRMVPALREVHDRQLGFRHYHDLIVNMSRRVLQE--------DPEETSVSLTPPLIGHSRHLRGRGGSGGG------SISNGXXXXXXXXXXXXXXXXXXXXXPSPT---AVTGEVGAA-------EAQRTRGGIGGAPT------FLPRHPDDRVFGSTVSGNGHRGVGGVKGGPSILNALRMTAGDGG 919
            F+  EMAAL VVAG AAAALRR+     +R+           D   E ++   A+KEE+  LREAM  +S SA+GL RQRD+ARA LARAKGTLRRMVPALRE  DRQLGFRHYHDLIVNMS+ VLQ+        D E        P   H+     RGG G G        S G                     P  T   A+ G  G         +  R   G G AP         P  P D+   +          GG + GP IL  LR TA  GG
Sbjct:  591 FSGREMAALAVVAGQAAAALRRVGAAASEREEVLEELDAXXADRVDETQKREEAVKEEMKHLREAMEHVSGSAKGLARQRDEARAALARAKGTLRRMVPALREARDRQLGFRHYHDLIVNMSKNVLQDGDGANPEADDERGRKGGVAPTPCHAD----RGGGGNGIHRCCRDASVGSHTRHNNNGSIGEDMGTRGNSPGATSTIAIFGSEGGGVSGIPGRQGPRLAAGGGSAPLSECGFKVSPSSPRDKAAAAVSFARSGDDGGGDRFGPEILTVLRETAAAGG 870
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig619.17003.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K0I6_9PHAE2.020e-3655.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQ01_ECTSI9.000e-3040.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig619contigF-serratus_M_contig619:368571..370829 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1057
Cds size867
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig619.17003.1prot_F-serratus_M_contig619.17003.1Fucus serratus malepolypeptideF-serratus_M_contig619 368674..370742 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931918.5383017-UTR-F-serratus_M_contig619:368570..3686731622931918.5383017-UTR-F-serratus_M_contig619:368570..368673Fucus serratus maleUTRF-serratus_M_contig619 368571..368673 +
1690964057.5017114-UTR-F-serratus_M_contig619:368570..3686731690964057.5017114-UTR-F-serratus_M_contig619:368570..368673Fucus serratus maleUTRF-serratus_M_contig619 368571..368673 +
1622931918.6787567-UTR-F-serratus_M_contig619:370742..3708291622931918.6787567-UTR-F-serratus_M_contig619:370742..370829Fucus serratus maleUTRF-serratus_M_contig619 370743..370829 +
1690964057.5492156-UTR-F-serratus_M_contig619:370742..3708291690964057.5492156-UTR-F-serratus_M_contig619:370742..370829Fucus serratus maleUTRF-serratus_M_contig619 370743..370829 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931918.5753224-CDS-F-serratus_M_contig619:368673..3686911622931918.5753224-CDS-F-serratus_M_contig619:368673..368691Fucus serratus maleCDSF-serratus_M_contig619 368674..368691 +
1690964057.5113783-CDS-F-serratus_M_contig619:368673..3686911690964057.5113783-CDS-F-serratus_M_contig619:368673..368691Fucus serratus maleCDSF-serratus_M_contig619 368674..368691 +
1622931918.5924165-CDS-F-serratus_M_contig619:369225..3693961622931918.5924165-CDS-F-serratus_M_contig619:369225..369396Fucus serratus maleCDSF-serratus_M_contig619 369226..369396 +
1690964057.5218768-CDS-F-serratus_M_contig619:369225..3693961690964057.5218768-CDS-F-serratus_M_contig619:369225..369396Fucus serratus maleCDSF-serratus_M_contig619 369226..369396 +
1622931918.6347017-CDS-F-serratus_M_contig619:369748..3699101622931918.6347017-CDS-F-serratus_M_contig619:369748..369910Fucus serratus maleCDSF-serratus_M_contig619 369749..369910 +
1690964057.5307167-CDS-F-serratus_M_contig619:369748..3699101690964057.5307167-CDS-F-serratus_M_contig619:369748..369910Fucus serratus maleCDSF-serratus_M_contig619 369749..369910 +
1622931918.6532433-CDS-F-serratus_M_contig619:370226..3707421622931918.6532433-CDS-F-serratus_M_contig619:370226..370742Fucus serratus maleCDSF-serratus_M_contig619 370227..370742 +
1690964057.539968-CDS-F-serratus_M_contig619:370226..3707421690964057.539968-CDS-F-serratus_M_contig619:370226..370742Fucus serratus maleCDSF-serratus_M_contig619 370227..370742 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig619.17003.1

>prot_F-serratus_M_contig619.17003.1 ID=prot_F-serratus_M_contig619.17003.1|Name=mRNA_F-serratus_M_contig619.17003.1|organism=Fucus serratus male|type=polypeptide|length=289bp
MIGVLKAWRWRGNERDPRKLARFSSPFASGEMAALGVVAGHAAAALRRLN
HEPIQRQGENDSASEKKQETAAMKEEVDSLREAMGQLSKSARGLVRQRDD
ARAELARAKGTLRRMVPALREVHDRQLGFRHYHDLIVNMSRRVLQEDPEE
TSVSLTPPLIGHSRHLRGRGGSGGGSISNGVGGGKRPDSRGASRRASPRR
SPSPTAVTGEVGAAEAQRTRGGIGGAPTFLPRHPDDRVFGSTVSGNGHRG
VGGVKGGPSILNALRMTAGDGGRGQKDGSSRSHERYRA*
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mRNA from alignment at F-serratus_M_contig619:368571..370829+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig619.17003.1 ID=mRNA_F-serratus_M_contig619.17003.1|Name=mRNA_F-serratus_M_contig619.17003.1|organism=Fucus serratus male|type=mRNA|length=2259bp|location=Sequence derived from alignment at F-serratus_M_contig619:368571..370829+ (Fucus serratus male)
TGGCGCGGCAGAACTGGGGGGGGAAACCGTGTTTGTGGGGAGAGAGCAGC
CGGTGTCGTACGTGGCGTGCGTGCCTGTGGTCGAGCGCGGTGGAGGGCGG
TCGATGATTGGTGTGCTGAAGGTGCTTTTTTTTTGGCGGGGGGGTTGCGG
GCTGGAGTACAGAAAAAGCGCAAGGGTATGTATAGTTTAGTGGATTCGTG
TTGCACGCACGTCGTGACTTGGTAGACGTGTTTTCAAGCGCGTGAAGGTT
ATTCAATGAGGCCGAGAAACGAGAAAATCTTACGGGTAGTAGTGCACGCC
GGCCCTGGGCGGCCTTTTTCATGTTGAGCTAGCTTTCTCGCCAAATGCGG
TACGATGAGTTTTTCCGCGCGCAGCAGATAGCCAAGGTCGCCCTCGACAC
GACGCCGTAAAACGTCTCTTAGACGGTAAAAGGCGTCGCAATTCCACCCC
CTTGTCGACGCATTGCGTTCTAGCTCAACTACGGTAAACCAAACGCCATA
CTCTTTTATATCGTTTTACCTAGTTGCTCTTATCATATGCACCCCCGAAG
ACTTAAAAGTATCTCCCAGCCAGTACTTGGTAGTATTCCCCTGCGACTCC
GCGTGTTATTGACACCCCCTTGCGTGCGCGGTGATCCGACCCTTGGGTTC
TATAGGCGTGGAGATGGCGGGGGAACGAGCGTGACCCTCGGAAGCTGGCC
CGTTTCTCTTCACCCTTCGCTTCCGGCGAGATGGCTGCACTCGGCGTCGT
GGCGGGGCACGCTGCAGCGGCCCTGCGGAGACTGAACCACGAACCGATCC
AGAGGCAGGGGGAGAATGATAGTGCGGTGAGAGCAGCAAGCTTATCGTTA
CGCAGTGAGCTGCTTTCAAAATACATTTCTTTCGTTTGTTTATATTATTA
TTACTTAGCGCGCAAGCTTTGGCATTGTTGCGCAACAGTTAAAAAAGCAG
GTGCGAGCGCGCTAAGGAGGAAAAAGGGACTATTTCGGGGGGGTGATGCC
GTCGCATGGGTGGAGCGCACGGGAGTGAGAACACAGCAGCGATGGTTCCG
ACGTTGAGTCTCGCCTTGTTCCTCGCACACACCGAAAACCTCAAAGCACC
CAACCAAAACCGGTCGACGAATGTATCCCTTATTTCGCTCCACCACCGTA
CCGCGGGAAACTTGTTCGCTCGAAGCAGAGCGAGAAAAAACAAGAAACCG
CCGCGATGAAGGAAGAGGTGGACAGCCTCCGCGAGGCCATGGGGCAACTT
TCCAAAAGCGCGCGGGGGCTCGTGCGGCAGCGGGATGACGCCCGAGCAGA
GCTGGCGCGGGCGAAAGGGACTCTTCGACGGATGGTGCCGGTGCGTGTGT
AAAGACTGAAGGGCGTTATATTTCGCTCCTACGTGGAACTGGTGTGTACG
GCAGCGAGGGGCTGAGGTCGTAGAAGGGGTTGCCTATTGTGTCCCGAGTG
TGTGGATAGTATGGGCATTATACTTGTGCTTTTACCGTCTGTGAACCAAG
ATGCCCATAAAACATGAGAGGTTGGGAGTTACGGTTCCCCCCCCCCTAAA
GTAAGTACACTGCGCACGTGTATTATTCCTTTTTTTACAATAACTAACGC
AAGCAACTCAGTGGTCCCGCTTGGTGCTCAACGCATTTTCGCTCTCTGGA
TGTAAGGCCCTTCGCGAGGTTCACGACCGCCAGCTTGGCTTCCGGCACTA
CCACGATTTGATCGTGAACATGTCTCGAAGGGTTCTCCAGGAAGACCCCG
AGGAGACCAGCGTTAGCCTAACCCCGCCGCTGATCGGCCATTCGAGGCAC
TTACGAGGGCGCGGCGGCAGCGGTGGCGGCAGTATCAGCAACGGGGTGGG
AGGCGGAAAACGCCCCGACAGTCGTGGTGCCAGCCGGAGGGCTAGCCCCA
GAAGGAGTCCAAGCCCTACTGCCGTGACGGGAGAAGTGGGGGCAGCCGAA
GCGCAGCGAACACGTGGTGGTATCGGAGGCGCTCCAACCTTCCTCCCCAG
ACACCCGGACGATCGAGTCTTTGGATCAACCGTTTCGGGGAATGGACATC
GTGGCGTCGGCGGCGTTAAGGGCGGGCCGTCGATTTTGAATGCCCTGCGG
ATGACGGCGGGGGATGGAGGCCGGGGACAAAAGGATGGGAGCTCTCGGTC
TCACGAGCGATATCGGGCCTAACGTGATCGGGTGTACTATTCTGGGGACG
CAAGCCCTCCGGTCAAGTCTGTTGTGTATTTTATTTAACGATATAGAACG
TATTTCCCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig619:368571..370829+

>mRNA_F-serratus_M_contig619.17003.1 ID=mRNA_F-serratus_M_contig619.17003.1|Name=mRNA_F-serratus_M_contig619.17003.1|organism=Fucus serratus male|type=CDS|length=1734bp|location=Sequence derived from alignment at F-serratus_M_contig619:368571..370829+ (Fucus serratus male)
ATGATTGGTGTGCTGAAGATGATTGGTGTGCTGAAGGCGTGGAGATGGCG
GGGGAACGAGCGTGACCCTCGGAAGCTGGCCCGTTTCTCTTCACCCTTCG
CTTCCGGCGAGATGGCTGCACTCGGCGTCGTGGCGGGGCACGCTGCAGCG
GCCCTGCGGAGACTGAACCACGAACCGATCCAGAGGCAGGGGGAGAATGA
TAGTGCGGCGTGGAGATGGCGGGGGAACGAGCGTGACCCTCGGAAGCTGG
CCCGTTTCTCTTCACCCTTCGCTTCCGGCGAGATGGCTGCACTCGGCGTC
GTGGCGGGGCACGCTGCAGCGGCCCTGCGGAGACTGAACCACGAACCGAT
CCAGAGGCAGGGGGAGAATGATAGTGCGAGCGAGAAAAAACAAGAAACCG
CCGCGATGAAGGAAGAGGTGGACAGCCTCCGCGAGGCCATGGGGCAACTT
TCCAAAAGCGCGCGGGGGCTCGTGCGGCAGCGGGATGACGCCCGAGCAGA
GCTGGCGCGGGCGAAAGGGACTCTTCGACGGATGGTGCCGAGCGAGAAAA
AACAAGAAACCGCCGCGATGAAGGAAGAGGTGGACAGCCTCCGCGAGGCC
ATGGGGCAACTTTCCAAAAGCGCGCGGGGGCTCGTGCGGCAGCGGGATGA
CGCCCGAGCAGAGCTGGCGCGGGCGAAAGGGACTCTTCGACGGATGGTGC
CGGCCCTTCGCGAGGTTCACGACCGCCAGCTTGGCTTCCGGCACTACCAC
GATTTGATCGTGAACATGTCTCGAAGGGTTCTCCAGGAAGACCCCGAGGA
GACCAGCGTTAGCCTAACCCCGCCGCTGATCGGCCATTCGAGGCACTTAC
GAGGGCGCGGCGGCAGCGGTGGCGGCAGTATCAGCAACGGGGTGGGAGGC
GGAAAACGCCCCGACAGTCGTGGTGCCAGCCGGAGGGCTAGCCCCAGAAG
GAGTCCAAGCCCTACTGCCGTGACGGGAGAAGTGGGGGCAGCCGAAGCGC
AGCGAACACGTGGTGGTATCGGAGGCGCTCCAACCTTCCTCCCCAGACAC
CCGGACGATCGAGTCTTTGGATCAACCGTTTCGGGGAATGGACATCGTGG
CGTCGGCGGCGTTAAGGGCGGGCCGTCGATTTTGAATGCCCTGCGGATGA
CGGCGGGGGATGGAGGCCGGGGACAAAAGGATGGGAGCTCTCGGTCTCAC
GAGCGATATCGGGCCTAAGCCCTTCGCGAGGTTCACGACCGCCAGCTTGG
CTTCCGGCACTACCACGATTTGATCGTGAACATGTCTCGAAGGGTTCTCC
AGGAAGACCCCGAGGAGACCAGCGTTAGCCTAACCCCGCCGCTGATCGGC
CATTCGAGGCACTTACGAGGGCGCGGCGGCAGCGGTGGCGGCAGTATCAG
CAACGGGGTGGGAGGCGGAAAACGCCCCGACAGTCGTGGTGCCAGCCGGA
GGGCTAGCCCCAGAAGGAGTCCAAGCCCTACTGCCGTGACGGGAGAAGTG
GGGGCAGCCGAAGCGCAGCGAACACGTGGTGGTATCGGAGGCGCTCCAAC
CTTCCTCCCCAGACACCCGGACGATCGAGTCTTTGGATCAACCGTTTCGG
GGAATGGACATCGTGGCGTCGGCGGCGTTAAGGGCGGGCCGTCGATTTTG
AATGCCCTGCGGATGACGGCGGGGGATGGAGGCCGGGGACAAAAGGATGG
GAGCTCTCGGTCTCACGAGCGATATCGGGCCTAA
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