mRNA_F-serratus_M_contig619.17002.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig619.17002.1
Unique NamemRNA_F-serratus_M_contig619.17002.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig619.17002.1 vs. uniprot
Match: A0A6H5K0I6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0I6_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 5.080e-23
Identity = 91/230 (39.57%), Postives = 113/230 (49.13%), Query Frame = 1 
Query:   43 LEVLARVAQEATSAFSFASSVARVFSLVEEFVAMAVPLSRGHLLLLTGKPGGEVFSLEYDQTVKPEQDAIEVFFPIGDGLVGRCISTGLPCHAVGRDGGXXXXXXXRLSSRRALKNNAV--VTPSGPADLYGLLPPDSXXXXYPEVTSSVAGTLTFSTDTSTSTGSKLA---PGPDSASTMHRTPGS-------------LAAVPADARGRRRRLAFFPAED--VDSRSP 672
            LE +A V  EA +AFS ASS+  VF+LVE+FV+     SRG LLLL G+PGG +F LE D+   P+QD +E  FPIG+GLV RC++TGL         G         SSRR    +    V  +GPADL+ L   +      P   ++  G        S     K A   P PDSAST+   P S             +  V    RG  R LAFFPA D    SRSP
Sbjct:  752 LEAVAGVFVEAAAAFSTASSIPEVFTLVEDFVSEVAISSRGRLLLLNGEPGGGMFCLESDRRAPPDQDPLEASFPIGNGLVARCVATGLAFQTRRGGNGSTGGASPPRSSRRLYSTSGALDVALAGPADLHALPLQERYDPESPSHRAAENGAHAQPLSMSFQGWKKKAVTGPIPDSASTLLPPPASWNHRRSRSPDGSPVLGVGGSGRGPSR-LAFFPASDDCESSRSP 980
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BLAST of mRNA_F-serratus_M_contig619.17002.1 vs. uniprot
Match: D7FQ01_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ01_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 7.250e-22
Identity = 62/135 (45.93%), Postives = 79/135 (58.52%), Query Frame = 1 
Query:   43 LEVLARVAQEATSAFSFASSVARVFSLVEEFVAMAVPLSRGHLLLLTGKPGGEVFSLEYDQTVKPEQDAIEVFFPIGDGLVGRCISTGLPCHAVGRDGGXXXXXXXRLSSRRALKNNAV--VTPSGPADLYGLLP 441
            LE +A    EA +AFS ASS+  VF+LVE+FV+     SRG LLLL G+PGG +F LE D+   P+QD +E  FPIG+GLV RC++TGL         G         SSRR    +    V  +GPADL+ L P
Sbjct:  395 LEAMAGAFVEAAAAFSTASSIPEVFTLVEDFVSEVAVSSRGRLLLLNGEPGGGMFCLESDRRAPPDQDPLEASFPIGNGLVARCVATGLAFQTRRGGNGSTGGASPPRSSRRLYSTSGALDVALAGPADLHALPP 529
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig619.17002.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K0I6_9PHAE5.080e-2339.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQ01_ECTSI7.250e-2245.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig619contigF-serratus_M_contig619:366998..368544 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size761
Cds size759
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig619.17002.1prot_F-serratus_M_contig619.17002.1Fucus serratus malepolypeptideF-serratus_M_contig619 366998..368544 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931913.124065-CDS-F-serratus_M_contig619:366997..3670991622931913.124065-CDS-F-serratus_M_contig619:366997..367099Fucus serratus maleCDSF-serratus_M_contig619 366998..367099 +
1690964054.6751306-CDS-F-serratus_M_contig619:366997..3670991690964054.6751306-CDS-F-serratus_M_contig619:366997..367099Fucus serratus maleCDSF-serratus_M_contig619 366998..367099 +
1622931913.1403253-CDS-F-serratus_M_contig619:367631..3677571622931913.1403253-CDS-F-serratus_M_contig619:367631..367757Fucus serratus maleCDSF-serratus_M_contig619 367632..367757 +
1690964054.6875324-CDS-F-serratus_M_contig619:367631..3677571690964054.6875324-CDS-F-serratus_M_contig619:367631..367757Fucus serratus maleCDSF-serratus_M_contig619 367632..367757 +
1622931913.1536453-CDS-F-serratus_M_contig619:368013..3685441622931913.1536453-CDS-F-serratus_M_contig619:368013..368544Fucus serratus maleCDSF-serratus_M_contig619 368014..368544 +
1690964054.7025144-CDS-F-serratus_M_contig619:368013..3685441690964054.7025144-CDS-F-serratus_M_contig619:368013..368544Fucus serratus maleCDSF-serratus_M_contig619 368014..368544 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig619.17002.1

>prot_F-serratus_M_contig619.17002.1 ID=prot_F-serratus_M_contig619.17002.1|Name=mRNA_F-serratus_M_contig619.17002.1|organism=Fucus serratus male|type=polypeptide|length=253bp
VGGVEASEEWVSGALEVLARVAQEATSAFSFASSVARVFSLVEEFVAMAV
PLSRGHLLLLTGKPGGEVFSLEYDQTVKPEQDAIEVFFPIGDGLVGRCIS
TGLPCHAVGRDGGGGGGDGSRLSSRRALKNNAVVTPSGPADLYGLLPPDS
HHHHYPEVTSSVAGTLTFSTDTSTSTGSKLAPGPDSASTMHRTPGSLAAV
PADARGRRRRLAFFPAEDVDSRSPPPARASPRSQGLPKRRECMSPQASAG
ASG
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mRNA from alignment at F-serratus_M_contig619:366998..368544+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig619.17002.1 ID=mRNA_F-serratus_M_contig619.17002.1|Name=mRNA_F-serratus_M_contig619.17002.1|organism=Fucus serratus male|type=mRNA|length=1547bp|location=Sequence derived from alignment at F-serratus_M_contig619:366998..368544+ (Fucus serratus male)
GTCGGGGGCGTGGAAGCATCAGAGGAGTGGGTTTCGGGGGCGTTGGAAGT
GCTGGCAAGAGTTGCTCAAGAGGCTACGTCGGCGTTTTCGTTCGCTAGCT
CGGTGAGGACCGCAAGAACAGACGGTTTTATAGATTAGTTCGTTTTTGCC
ACAAGACGGGGAAAGTTATTGCGTGGTTTTTACCGGGAAAAGCCACTGAA
GATGGGGATATAGAGCTGCTCTGTACCACAGCCGACGCTGCAATGAACGT
CGAACACGAATCGAGCGCTTGATTCCGACACTTTTACCTCCCCCTTCCTA
GGTTGATAGAGGAGTTACTGTTAAGCAACGAGGTCAGTCAACGCATATGT
TCCCGTGAGACCGTGTCTCCAAATGCACCGGAGAACGAAACAAACAACAA
ACTACCCCATATTCACGATTGCACAAAGAAGGGTCCACATGTAGAGGTTT
ACCGTGGTGTGGATTTTGCTGGACCCTCCGCGCCTTGACATGAGCGGGGG
ACGTTTAGGAGCAACGTATTGGAGCAACGTATTTTTCGGCGTCTATAATG
AAGTATGTAAAGAACATACCAGTTCCGCCCGCAACCCTCTTGTCAAAATC
CGCTTTTTGTTCTTTTTGCTTTTTGTTCTTTCAGGTCGCTCGAGTCTTCT
CGCTCGTGGAGGAGTTTGTCGCCATGGCTGTTCCGCTATCGCGGGGACAC
CTGCTTCTGCTCACCGGCAAACCGGGCGGGGAGGTGTTTAGCCTTGAATA
CGATCAAACGGTAGGAGGGCCAACAGCACCAACATCATCCAGGCGTTTAC
CTTGGCGCAGAGTGTTTTTAATCTTGTTTTTACCCTCGTCAACGCAGCGG
TTGTGGACCTGAACCGTTGATTGATGACTCAATCATGCAAGCCCATTGTC
GCATATTTTCATATTTTTTGTACTTGATTGTTTTTACCATCAAACCATCA
CCAAGCATGGCAGATCGAGCGCGCAGTTTTGTACCTTGCCCCCCAACTCT
CTCGACCTGCCGTCAGGTCAAACCCGAACAAGATGCGATTGAGGTTTTCT
TCCCGATCGGCGACGGCTTGGTTGGTCGATGCATTTCCACGGGCCTCCCA
TGCCATGCGGTAGGTAGAGACGGTGGTGGAGGCGGCGGCGACGGCAGCCG
CCTCAGCAGCCGCCGCGCCCTTAAAAACAACGCTGTTGTTACCCCGAGCG
GCCCAGCTGACCTTTACGGCCTTCTTCCGCCGGATAGTCACCACCATCAC
TACCCCGAAGTGACGTCCTCCGTCGCTGGCACGCTCACGTTTTCCACGGA
CACTAGCACCAGTACCGGCAGCAAGCTGGCTCCCGGACCCGACAGCGCGT
CGACGATGCATCGTACGCCAGGCTCTCTCGCTGCTGTCCCGGCTGATGCG
CGGGGAAGACGTCGCCGTTTGGCCTTTTTCCCGGCGGAAGATGTCGACTC
GCGGTCACCACCCCCCGCTCGAGCTTCACCGAGATCTCAGGGATTGCCAA
AAAGACGCGAATGCATGTCCCCACAAGCGTCTGCGGGTGCTTCCGGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig619:366998..368544+

>mRNA_F-serratus_M_contig619.17002.1 ID=mRNA_F-serratus_M_contig619.17002.1|Name=mRNA_F-serratus_M_contig619.17002.1|organism=Fucus serratus male|type=CDS|length=1518bp|location=Sequence derived from alignment at F-serratus_M_contig619:366998..368544+ (Fucus serratus male)
GTCGGGGGCGTGGAAGCATCAGAGGAGTGGGTTTCGGGGGCGTTGGAAGT
GCTGGCAAGAGTTGCTCAAGAGGCTACGTCGGCGTTTTCGTTCGCTAGCT
CGGTCGGGGGCGTGGAAGCATCAGAGGAGTGGGTTTCGGGGGCGTTGGAA
GTGCTGGCAAGAGTTGCTCAAGAGGCTACGTCGGCGTTTTCGTTCGCTAG
CTCGGTCGCTCGAGTCTTCTCGCTCGTGGAGGAGTTTGTCGCCATGGCTG
TTCCGCTATCGCGGGGACACCTGCTTCTGCTCACCGGCAAACCGGGCGGG
GAGGTGTTTAGCCTTGAATACGATCAAACGGTCGCTCGAGTCTTCTCGCT
CGTGGAGGAGTTTGTCGCCATGGCTGTTCCGCTATCGCGGGGACACCTGC
TTCTGCTCACCGGCAAACCGGGCGGGGAGGTGTTTAGCCTTGAATACGAT
CAAACGGTCAAACCCGAACAAGATGCGATTGAGGTTTTCTTCCCGATCGG
CGACGGCTTGGTTGGTCGATGCATTTCCACGGGCCTCCCATGCCATGCGG
TAGGTAGAGACGGTGGTGGAGGCGGCGGCGACGGCAGCCGCCTCAGCAGC
CGCCGCGCCCTTAAAAACAACGCTGTTGTTACCCCGAGCGGCCCAGCTGA
CCTTTACGGCCTTCTTCCGCCGGATAGTCACCACCATCACTACCCCGAAG
TGACGTCCTCCGTCGCTGGCACGCTCACGTTTTCCACGGACACTAGCACC
AGTACCGGCAGCAAGCTGGCTCCCGGACCCGACAGCGCGTCGACGATGCA
TCGTACGCCAGGCTCTCTCGCTGCTGTCCCGGCTGATGCGCGGGGAAGAC
GTCGCCGTTTGGCCTTTTTCCCGGCGGAAGATGTCGACTCGCGGTCACCA
CCCCCCGCTCGAGCTTCACCGAGATCTCAGGGATTGCCAAAAAGACGCGA
ATGCATGTCCCCACAAGCGTCTGCGGGTGCTTCCGGGGTCAAACCCGAAC
AAGATGCGATTGAGGTTTTCTTCCCGATCGGCGACGGCTTGGTTGGTCGA
TGCATTTCCACGGGCCTCCCATGCCATGCGGTAGGTAGAGACGGTGGTGG
AGGCGGCGGCGACGGCAGCCGCCTCAGCAGCCGCCGCGCCCTTAAAAACA
ACGCTGTTGTTACCCCGAGCGGCCCAGCTGACCTTTACGGCCTTCTTCCG
CCGGATAGTCACCACCATCACTACCCCGAAGTGACGTCCTCCGTCGCTGG
CACGCTCACGTTTTCCACGGACACTAGCACCAGTACCGGCAGCAAGCTGG
CTCCCGGACCCGACAGCGCGTCGACGATGCATCGTACGCCAGGCTCTCTC
GCTGCTGTCCCGGCTGATGCGCGGGGAAGACGTCGCCGTTTGGCCTTTTT
CCCGGCGGAAGATGTCGACTCGCGGTCACCACCCCCCGCTCGAGCTTCAC
CGAGATCTCAGGGATTGCCAAAAAGACGCGAATGCATGTCCCCACAAGCG
TCTGCGGGTGCTTCCGGG
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