mRNA_F-serratus_M_contig619.16995.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig619.16995.1 vs. uniprot
Match: D7FQ05_ECTSI (Ankyrin repeat domain 16 isoform 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ05_ECTSI) HSP 1 Score: 984 bits (2545), Expect = 0.000e+0 Identity = 622/1359 (45.77%), Postives = 771/1359 (56.73%), Query Frame = 2
Query: 242 MIELSRAQETERRLSAGRLATYLVSAYG-----GDTIALKRAQVTVHEALRRVEDTMGRPT-------------------KIFSRPLEQGFDEKG-------VRGITAAADKRLAMP---SGTIIASSNV---SLDKEQDHDPNDLPLPVAKIRRGRSRRMNLYEDLMVSALETTREHLEPDWAILDLLELVEVELMSKRRG-----QRASRAVLDAIRMLPISDAGDIFVTRAARGDIGVILFYFGEGLPITHTHTTLKYQALHAAVVFGHLDSARLLVAMGAKVNARGGLDGRSPLFLAALGKRWNVCSWLLEIGASKNIRDKLGLQAYEAMTRSSDPEVAERAGMLTDPPQRVASVICNGITARSLSLAWSEPLRSYDREKFLGYLVEWRPMRSRPVSTAHSKHI-ERMKPGAEDNGRVERANMQLTAARSPSVEVALTGPSRAVGSRTEADRELSGAALH---RRPDTCGGETMADAAGRTKLPPWKSREVEDCHLKIVRLHPATSYLVRVSAFSLAGYGAPSREALLCTRVSPPSAPRSAPVMVSTTPTSITVGWIPPKYENGAPMARYEIQWLVLDQTRPDLDNDRDVFALETSELSSPSNSDSDGDEGTTTPAGDSPRTTCTDPI-------------------RSSSTTAKVTSAGIDVDNSAESVRSGPA------------PECKNKNCGWTGMKVQSLNPYHTAAGLPMYCRAIFRVRADNAEGWGHWSPASHPLEAQDIILPIKLGATYMLTRWFNKPGENVVLWELSRRIFKYGGDFRGDDDESWVVCSGEIPGKHEGESTHWCQGLSPGTAYQFRLRAFSTGSWQPKEKAVVSRQFTTVCSPPDPPPRCPRSRQLDSDPMPPNGGVVDTGAVLAGTRRHSCKLTMSRDR----GGEIKNVEDCGEAGRGQATDMGCSEDGSTESERTEIRLDHDTFEGRENGEARVQKDGEEEINIIRGCGEAGRGQETDAHT---------------MAADMALGEDGSAEFEKAEKRLDSITDEVRDY------------VGTREKGSRKGDWREPGEVNDLQRGRDKPKRKSASGGGMHQREADTDGEXXXXXXXXXXXXXVTGEGESTAGVPQ-----------SKVSHNGSTSMMLEWDAGSSNGAITTNFEVWGLAKVVEGS-KTTGDGVWRLVATTGAAPTATLCGLRQAQPYRFKVRARNELGWSEFGPPTKTLVLNPLQACAPPDLTGRGTTWLALRLLAPPKSGLVLGFELQMCRCLPGMSKGEETWTYIYGGEGGSSG--------------------ITRQESPVIRDLRPGAGYRFKARAKTVFGWSPEGSVSEVYTTKRRF 3898
M+E R QE ERRL AG LAT L+ + G G A +RAQ TVHEALR ++ G K F L ++ + G+T +D+ +G I+ S V + D+ H P A IRR EDL+ + TR H+EP+WA ++LL+ +E EL +R G QR+S+ +LDAIR+LP +AGD+FVT AARG +GV+LFYF EGLPI H+HTTLKYQALHAAV FGHLDSARLLVAMGAKV+ARGG + RSPLFLAAL KRW+ C+WLLE+GASK IRDK GL AY+AM SSDPEVAER+GMLTDPPQR+ SV C GIT +L L WSEPLRSYD E F+GYLVEWRPMRSRPV AHS+H+ ER++P + + RA Q R + E A T +A DR+ GAA RRP+T GGET AD A PWK REVE L++ L+PAT+Y+VRVSA +LAGYG PSREALL TRVSPPSAP+ A MVS TP SITVGW+PPKYENG P+ RYEIQ LVLD+ PD D R + +SEL + ++ + T +G++ ++ ES P+ E K K W G + L+PYHTA GLP YCRA+FRVRA N GWG WSP+S LEAQDIILPIK GAT ML RWFNKP +V+ WELSRR+FKYG DFRGD+D+SW++CS +IPG EGEST C+GL PGT YQFRLRA+S G WQ E+++VS F T+CSPPD PP CP +RQL SDP+ GG+VDTGA+L+ ++R G GRG + D G + S RT G+AR ++D + + GC +AG D H+ A +G+ E R + + EV+D+ + R E EV Q G A G + EA++ GE GE G + +K+ + ST+M+LEWDAG +NG+ITTN+EVWG+A +G KT+G G W LVA T AAPTATL GLR+AQPYRFKVRARN LGWSEFGPPT +VLNPL+ C P+L RG TWLAL+L APP +GL+LGFE+ MCR PGMS+GEETW + + G +ES ++ DL+PGAGYRFKARA+TVFGWSP G S+VY T RRF
Sbjct: 1 MLEALREQEEERRLCAGPLATSLLRSCGSVTAGGSNRARERAQATVHEALRCLKANTGNSNRNSAHRDGPESLLGDLLLDKEFGGALNSWVGDQRETAGPAWLGGVTQDSDQTFFEQRNNNGAIVTSVRVIGGTADQHHQHRPPS----KADIRR---------EDLLSAISRVTRHHIEPEWAAVELLDCIEEELTPRREGEQQQLQRSSQMMLDAIRVLPAPEAGDVFVTCAARGHVGVVLFYFEEGLPIDHSHTTLKYQALHAAVEFGHLDSARLLVAMGAKVDARGGAEDRSPLFLAALAKRWDACTWLLEVGASKIIRDKKGLTAYQAMAASSDPEVAERSGMLTDPPQRIVSVSCRGITHNTLDLTWSEPLRSYDEEVFVGYLVEWRPMRSRPVCPAHSRHVAERVRPPRKGKKKRGRAGWQGAEIRPGTAEEACTTSHQAFS--MGGDRDALGAASASSLRRPNTGGGETTADEAL-----PWKRREVEAFPLRLKHLYPATNYMVRVSAQTLAGYGVPSREALLRTRVSPPSAPKEAANMVSATPNSITVGWVPPKYENGEPITRYEIQRLVLDRHHPDWDKGRVLAKTGSSELLTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATQAPAETPACVGSGVESGSTEESRVKLPSVSGGXXXXXXAMDEDKKKIGVWIGRRTDKLSPYHTAGGLPTYCRALFRVRAGNLAGWGPWSPSSDALEAQDIILPIKRGATQMLMRWFNKPDGDVLRWELSRRVFKYGTDFRGDNDDSWILCSRDIPGLREGESTFRCKGLMPGTEYQFRLRAYSNGCWQASEESIVSSPFKTICSPPDAPPACPCTRQLASDPLV-VGGMVDTGALLSADAEEPATSGITRGDNRRDGXXXXXXXXXXVDGRG-SVDAGGD---AAFSRRTRAAA---AAAAVVRGKARAEEDFADTGRDVNGCADAGSESRYDGHSSGSGGDDGRTETHGDQGAGEGVGKAACKSIVHGEGRAEVMGLEVKDWDKCVRTSRDDEEIIRRRTHEATSQAEEQDEVGMEQTG--------ARGVRLSNDEAESIGESPFLPELSGDATTKRNHGELEEGKSREDESVEDLAKTAKLCSSASTTMVLEWDAGCTNGSITTNYEVWGVADSTQGQDKTSGSGKWTLVALTKAAPTATLSGLREAQPYRFKVRARNGLGWSEFGPPTPPVVLNPLRPCEAPELVDRGITWLALKLRAPPGAGLLLGFEMHMCRWAPGMSEGEETWRLVVDSQREQGGREXXXXXXXXXXXXXXXXXXXXXEESRMVWDLKPGAGYRFKARARTVFGWSPGGPASDVYNTARRF 1323
BLAST of mRNA_F-serratus_M_contig619.16995.1 vs. uniprot
Match: A0A6H5KFL4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFL4_9PHAE) HSP 1 Score: 885 bits (2288), Expect = 4.850e-296 Identity = 563/1258 (44.75%), Postives = 704/1258 (55.96%), Query Frame = 2
Query: 503 GTIIASSNVSLDKEQDHDPNDLPLPVAKIRRGRSRRMNLYEDLMVSALETTREHLEPDWAILDLLELVEVELMSKRRG-----QRASRAVLDAIRMLPISDAGDIFVTRAARGDIGVILFYFGEGLPITHTHTTLKYQALHAAVVFGHLDSARLLVAMGAKVNARGGLDGRSPLFLAALGKRWNVCSWLLEIGASKNIRDKLGLQAYEAMTRSSDPEVAERAGMLTDPPQRVASVICNGITARSLSLAWSEPLRSYDREKFLGYLVEWRPMRSRPVSTAHSKHIERMKPGAEDNGRVERANMQLTAARSPSVEVALTGPSR-AVGSRTEADRELSGAALHRRPDTCGGETMADAAGRTKLPPWKSREVEDCHLKIVRLHPATSYLVRVSAFSLAGYGAPSREALLCTRVSPPSAPRSAPVMVSTTPTSITVGWIPPKYENGAPMARYEIQWLVLDQTRPDLDNDRDVFALETSELSSPSNSDSDGDEG-------------------------------------TTTPAGDSPRTTCTDPIRSSSTTAKVTSAGIDVDNSAESVRSGPAPECKNKNCGWTGMKVQSLNPYHTAAGLPMYCRAIFRVRADNAEGWGHWSPASHPLEAQDIILPIKLGATYMLTRWFNKPGENVVLWELSRRIFKYGGDFRGDDDESWVVCSGEIPGKHEGESTHWCQGLSPGTAYQFRLRAFSTGSWQPKEKAVVSRQFTTVCSPPDPPPRCPRSRQLDSDPMPPNGGVVDTGAVLAGTRRHSCKLTMSR----------------DRGGEIKNVEDCGEAGR-GQATDMGCSEDGSTESERTEIRLDHDT-------FEGRENGEARVQKDGEEEINIIRGCGEAGRGQETDAHTMAADMALGEDGSAEF-------------------EKAEKRLDSIT--DEVRDYVGTREKGSRKGDWREPGEVNDLQRGRDKPKRKSASGGGMHQREADTDGEXXXXXXXXXXXXXVTGEGESTAGVPQS-KVSHNGSTSMMLEWDAGSSNGAITTNFEVWGLAKVVEGS-KTTGDGVWRLVATTGAAPTATLCGLR---------------QAQPYRFKVRARNELGWSEFGPPTKTLVLNPLQACAPPDLTGRGTTWLALRLLAPPKSGLVLGFELQMCRCLPGMSKGEETWTYIYGGE---------------------GGSSGITRQESPVIRDLRPGAGYRFKARAKTVFGWSPEGSVSEVYTTKRRF 3898
G I+ S V+ H + P A +RR EDL+ + TR H+EP+WA +++L+ +E EL +R G QR+S+ VLDAIR+LP +AGD+FVT AARG +GV+L YF EGLPI H+HTTLKYQALHAAV FGHLDSARLLVAMGAKV+ARGG + RSPLFLAAL KRW+ C+WLLE+GASK IRDK GL AY+AM SSDPEVAER+GMLTDPPQR+ SV C GIT +L L WSEPLRSYD E F+GYL +++PG + A + S + TG R A+G+ + A+ RRP+T GGET AD PWK REVE L++ L+PAT+Y+VRVSA +LAGYG PSREALL TRVSPPSAP+ A MVS TP SITVGW+PPKYENG P+ RYEIQ LVLD+ PD D R + +SEL + T ++P + S+ ++V + S +G E K + W G + L+P+HTA GLP YCRA+FRVRA N GWG WSP+S LEAQDIILPIK GAT ML RWFNKP +V+ WELSRR+FKYG DFRGD+D SW++CS +IPG EGEST C+GL PGT YQFRLRA+S G WQ E+++VS F T+CSPPD PP CPR+RQL SDP+ GG+VDTGA+L+ + + D GG + D + R G A G T +E D E R +G++ DG++ G AG G +A + +G AE E+ +R T +E +D VG + G R R E + R+ P + S +R + E ES G ++ K+ + ST+M+LEWDAG +NG++TTN+EVWG+A +G KT+G G W LVA T AAPTATL GLR QAQPYRFKVRARN LGWSEFGPPT +VLNPL+ C P+L RG TWLAL+L APP +GL+LGFE+ MCR PGMS+GEETW+ + + R+ES ++ DL+PGAGYRFKARA+TV GWSP G VS+VY T RRF
Sbjct: 81 GAIVTSVRVTGGTADQHHQHRPP-SKADVRR---------EDLLSAIYRVTRHHMEPEWAAVEILDCIEEELTPRREGKQQQLQRSSQMVLDAIRLLPAPEAGDLFVTCAARGHVGVLLLYFEEGLPIDHSHTTLKYQALHAAVEFGHLDSARLLVAMGAKVDARGGAEDRSPLFLAALAKRWDACTWLLEVGASKIIRDKKGLTAYQAMAASSDPEVAERSGMLTDPPQRIVSVSCRGITHNTLDLTWSEPLRSYDEEVFVGYLGA------------------KIRPGTAEE------------ACTTSHQAFSTGGGRDALGAAS--------ASSLRRPNTGGGETTADETF-----PWKRREVETFPLRLKHLYPATNYIVRVSARTLAGYGVPSREALLRTRVSPPSAPKEAVNMVSATPNSITVGWVPPKYENGEPITRYEIQRLVLDRHHPDWDKGRVLAKTGSSELLTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEATQATAEAPACFGSRVESGSTEESRVKLPSVSGGGSG----TGTMDEDKKQIGVWIGRRTDKLSPHHTAGGLPTYCRALFRVRAGNLAGWGPWSPSSDALEAQDIILPIKRGATQMLIRWFNKPDGDVLRWELSRRVFKYGTDFRGDNDGSWILCSRDIPGLREGESTFRCKGLMPGTEYQFRLRAYSNGCWQASEESIVSSPFKTICSPPDAPPACPRARQLASDPLV-VGGIVDTGALLSADAEEPATSGIRKGDNRRDGXXXXXXXXVDGGGSVDAGRDAAFSRRTGAAAAAAAVVRGKTRAEEDFADTGRDVNDCADVGSESRYDGDS-SDSDGDDRRTETHGDQGAGEG----VVMVACKSTVNGEGRAEVMGLEVEDRDTRVPTSRDDEERIRRRTHEATSQEEEQDEVGMEQTGVR--GVRLSNEAESI---RESPSLPALSCDAATKRN------------HTELEEGKSREDESVEGFAKTTKLGSSASTTMVLEWDAGCTNGSVTTNYEVWGVADSTQGQDKTSGSGKWTLVALTEAAPTATLSGLREVCKSLCNPPLVSTRQAQPYRFKVRARNGLGWSEFGPPTPPVVLNPLRPCEAPELVDRGITWLALKLRAPPGAGLLLGFEMHMCRWAPGMSEGEETWSLVVDSQREEXXXXXXXXXXXXXXXXXXXXXXXXXREESRMVWDLKPGAGYRFKARARTVIGWSPGGPVSDVYNTARRF 1258
BLAST of mRNA_F-serratus_M_contig619.16995.1 vs. uniprot
Match: A0A7S1XYK0_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XYK0_9STRA) HSP 1 Score: 97.4 bits (241), Expect = 1.570e-16 Identity = 72/243 (29.63%), Postives = 106/243 (43.62%), Query Frame = 2
Query: 3260 STAGVPQSKVSHNGSTSMMLEWDAGSSNGAITTNFEVWGLAKVVEGSKTTGDGVWRLVATTGAAPTATLCGLRQAQPYRFKVRARNELGWSEFGPPTKTLVLNPLQACAPPDLTGRGTTWLALRLLAPPKSGLVLGFELQMCRCLPGMSKGEETWTYI------------------------YGGEGGS-----SGITRQE--SPVIRDLRPGAGYRFKARAKTVFGWSPEGSVSEVYTTKRR 3895
S G+P S +S S+ L W A NGAI +++W +T G W +++ TA + L YRF+VRARN++GWSEFG ++ + N + P++ G +W+ L+ + P +V FE+ M ++ EE W Y G EGG + R E S + DL+ Y+FK R T FGWSP G+ S+V RR
Sbjct: 810 SAPGLPSSDLSLCSGESIFLTWAASKPNGAIVDLYDIWA---------STDFGPWEQMSSC-IHNTADVPHLNSGSQYRFRVRARNDVGWSEFGEESEVVTTNSIAPPGRPEIVAMGGSWVQLKWVQPASVNVVDVFEVYML-----VTGTEEYWDYAPAMAVPAAMVDANAAAEGGDSSHAEGAEGGQYQYQWQAVARVEGTSCTVPDLKSSFRYKFKIRCATAFGWSPFGADSDVIKLPRR 1037
BLAST of mRNA_F-serratus_M_contig619.16995.1 vs. uniprot
Match: A0A7S2GIS6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GIS6_9STRA) HSP 1 Score: 77.0 bits (188), Expect = 1.230e-11 Identity = 62/208 (29.81%), Postives = 92/208 (44.23%), Query Frame = 2
Query: 3296 NGSTSMMLEWDAGSSNGAITTNFEVWGLAKVVEGSKTTGDGVWRLVATTGAAPTA---TLCGLRQAQPYRFKVRARNELGWSEFGPPTKTLVLNPLQACAPPDLTGRGTTWLALRLLAPPKSGLVLG-----FELQMCRCLPGMSKGEETWTYIYGGEGGSSGITRQESPVIRDLRPGAGYRFKARAKTVFGWSPEGSVSEVYTTKRR 3895
N S+S++L+W G SNG F+++ DG W ++ T PTA + + + Y FK+RA+NE+GWS+F T + N + + G G TWL L +PP + L+ +ELQ +C P E W + R V+ LR RF+ARA T+ GWS + + T RR
Sbjct: 54 NSSSSIVLQWAVGWSNGPRIECFDIFVSCD---------DGPWNML--TSVEPTAKKFVVSDVVRGTGYVFKIRAKNEIGWSDFSEQTDEIKANAIPMPRNLQVNGSGVTWLELSW-SPPVTDLLAAVRVERYELQQQKCDPAQETSE--WATLT-----CDPALRDTRWVVEGLRSLERLRFRARALTLEGWSAFCDPTPWHRTPRR 242
BLAST of mRNA_F-serratus_M_contig619.16995.1 vs. uniprot
Match: A0A7S3XNU2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XNU2_HETAK) HSP 1 Score: 67.4 bits (163), Expect = 1.230e-7 Identity = 33/88 (37.50%), Postives = 56/88 (63.64%), Query Frame = 2
Query: 1583 EVEDCHLKIVRLHPATSYLVRVSAFSLAGYGAPSREALLCTRVSPPSAPRSAPVMVSTTPTSITVGWIPPKYENGAPMARYEIQWLVL 1846
+++ ++ L PA +Y RVSA ++AG G PS+E T+ PPS P S P+++ + PT +GW+PPKY NGA + +E+++ ++
Sbjct: 54 DLKSTKYEVTGLSPACAYAARVSARNVAGLGPPSKEVAFHTKPGPPSTPGS-PLLLRSEPTRAWLGWVPPKYHNGAQLQGFEVRYCLV 140 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig619.16995.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig619.16995.1 >prot_F-serratus_M_contig619.16995.1 ID=prot_F-serratus_M_contig619.16995.1|Name=mRNA_F-serratus_M_contig619.16995.1|organism=Fucus serratus male|type=polypeptide|length=1255bp MLEKSLWVQSVMVSSTRDREKTPVPPQSRQTSLSAMIELSRAQETERRLSback to top mRNA from alignment at F-serratus_M_contig619:249509..259311- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig619.16995.1 ID=mRNA_F-serratus_M_contig619.16995.1|Name=mRNA_F-serratus_M_contig619.16995.1|organism=Fucus serratus male|type=mRNA|length=9803bp|location=Sequence derived from alignment at F-serratus_M_contig619:249509..259311- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig619:249509..259311- >mRNA_F-serratus_M_contig619.16995.1 ID=mRNA_F-serratus_M_contig619.16995.1|Name=mRNA_F-serratus_M_contig619.16995.1|organism=Fucus serratus male|type=CDS|length=7530bp|location=Sequence derived from alignment at F-serratus_M_contig619:249509..259311- (Fucus serratus male)back to top |