mRNA_F-serratus_M_contig6170.16971.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6170.16971.1
Unique NamemRNA_F-serratus_M_contig6170.16971.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig6170.16971.1 vs. uniprot
Match: O82433_FUCDI (Vanadium bromoperoxidase n=1 Tax=Fucus distichus TaxID=3012 RepID=O82433_FUCDI)

HSP 1 Score: 156 bits (394), Expect = 5.440e-43
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1
Query:    1 LIGLDRGGECFPNPVFPSDDGLELINFEGACLTYEGEINKLAVNVAFGRQMLGIHYRFDGIQGLLLGETITVR 219
            LIGLDRGGECFPNPVFPSDDGLELINFEGACLTYEGEINKLAVNVAFGRQMLGIHYRFDGIQGLLLGETITVR
Sbjct:  551 LIGLDRGGECFPNPVFPSDDGLELINFEGACLTYEGEINKLAVNVAFGRQMLGIHYRFDGIQGLLLGETITVR 623          
BLAST of mRNA_F-serratus_M_contig6170.16971.1 vs. uniprot
Match: PRXV_ASCNO (Vanadium-dependent bromoperoxidase n=1 Tax=Ascophyllum nodosum TaxID=52969 RepID=PRXV_ASCNO)

HSP 1 Score: 141 bits (355), Expect = 6.650e-38
Identity = 63/73 (86.30%), Postives = 71/73 (97.26%), Query Frame = 1
Query:    1 LIGLDRGGECFPNPVFPSDDGLELINFEGACLTYEGEINKLAVNVAFGRQMLGIHYRFDGIQGLLLGETITVR 219
            LIGLDRGG+C+P+PV+P DDGL+LI+F G+CLT+EGEINKLAVNVAFGRQMLGIHYRFDGIQGLLLGETITVR
Sbjct:  432 LIGLDRGGDCYPDPVYPDDDGLKLIDFRGSCLTFEGEINKLAVNVAFGRQMLGIHYRFDGIQGLLLGETITVR 504          
BLAST of mRNA_F-serratus_M_contig6170.16971.1 vs. uniprot
Match: B7ZGM6_9PHAE (Putative vanadium-dependent iodoperoxidase 3 n=1 Tax=Laminaria digitata TaxID=80365 RepID=B7ZGM6_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 3.070e-25
Identity = 47/73 (64.38%), Postives = 57/73 (78.08%), Query Frame = 1
Query:    1 LIGLDRGGECFPNPVFPSDDGLELINFEGACLTYEGEINKLAVNVAFGRQMLGIHYRFDGIQGLLLGETITVR 219
            L+GL+RG +CF +P  P D+GL L++F G CLT+EGEINKLAVNVAFGR M G+H+R D  QGLLLGE   VR
Sbjct:  490 LVGLERGSDCFRDPKVPDDEGLTLLDFTGDCLTFEGEINKLAVNVAFGRNMCGVHWRIDSEQGLLLGEMAAVR 562          
BLAST of mRNA_F-serratus_M_contig6170.16971.1 vs. uniprot
Match: A0A3G3BM28_SACJA (Vanadium-dependent iodine peroxidase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A3G3BM28_SACJA)

HSP 1 Score: 103 bits (257), Expect = 3.870e-24
Identity = 47/73 (64.38%), Postives = 58/73 (79.45%), Query Frame = 1
Query:    1 LIGLDRGGECFPNPVFPSDDGLELINFEGACLTYEGEINKLAVNVAFGRQMLGIHYRFDGIQGLLLGETITVR 219
            L+GL+RG ECF +PV PSDDGL L+ F+G CLT+EGEINK A NVA GR  +G+H+R D  +GLLLGET+ VR
Sbjct:  479 LVGLERGLECFNDPVVPSDDGLTLLPFDG-CLTFEGEINKYAANVALGRNWMGVHWRMDAQEGLLLGETVAVR 550          
BLAST of mRNA_F-serratus_M_contig6170.16971.1 vs. uniprot
Match: Q4LDE6_9PHAE (Vanadium-dependent iodoperoxidase 1 n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q4LDE6_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 2.490e-23
Identity = 48/77 (62.34%), Postives = 57/77 (74.03%), Query Frame = 1
Query:    1 LIGLDRGGECFPNPVFPSDDGLELINFEGA----CLTYEGEINKLAVNVAFGRQMLGIHYRFDGIQGLLLGETITVR 219
            L+GL+RG  CF +PVFP D+GL L+ + G     CLT+EGEINKLAVNVA GR MLG+H+R D   GLLLGET  VR
Sbjct:  497 LVGLERGSVCFNDPVFPDDEGLTLLPYTGDDGNNCLTFEGEINKLAVNVALGRNMLGVHWRIDSELGLLLGETAAVR 573          
BLAST of mRNA_F-serratus_M_contig6170.16971.1 vs. uniprot
Match: A0A4Y7RBA7_9FIRM (PAP2 superfamily protein n=2 Tax=Pelotomaculum TaxID=191373 RepID=A0A4Y7RBA7_9FIRM)

HSP 1 Score: 79.0 bits (193), Expect = 1.780e-15
Identity = 36/62 (58.06%), Postives = 44/62 (70.97%), Query Frame = 1
Query:   34 PNPVFPSDDGLELINFEGACLTYEGEINKLAVNVAFGRQMLGIHYRFDGIQGLLLGETITVR 219
            PNPV    DGL L+ +EG  LT  GE+NKLAVN+A GR   GIH+R DG +GL LGET+ +R
Sbjct:  498 PNPVVAGPDGLSLLPYEGPPLTVGGELNKLAVNIAMGRDFAGIHWRTDGSEGLKLGETVAIR 559          
BLAST of mRNA_F-serratus_M_contig6170.16971.1 vs. uniprot
Match: A0A1H9CXN4_9BACI (Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein n=2 Tax=Piscibacillus halophilus TaxID=571933 RepID=A0A1H9CXN4_9BACI)

HSP 1 Score: 75.5 bits (184), Expect = 2.360e-15
Identity = 32/61 (52.46%), Postives = 42/61 (68.85%), Query Frame = 1
Query:   34 PNPVFPSDDGLELINFEGACLTYEGEINKLAVNVAFGRQMLGIHYRFDGIQGLLLGETITV 216
            PNPV  S DG  L+ + G  LT  GE+NKLA N+A GR   G+H+RFDG++GL LGE + +
Sbjct:   89 PNPVEASSDGTSLLPYSGTSLTIGGELNKLATNIAHGRDTAGVHWRFDGVEGLKLGERVAI 149          
BLAST of mRNA_F-serratus_M_contig6170.16971.1 vs. uniprot
Match: UPI001BC9DC0A (vanadium-dependent haloperoxidase n=1 Tax=Bacillus sp. FJAT-50051 TaxID=2833578 RepID=UPI001BC9DC0A)

HSP 1 Score: 78.6 bits (192), Expect = 2.410e-15
Identity = 36/65 (55.38%), Postives = 44/65 (67.69%), Query Frame = 1
Query:   22 GECFPNPVFPSDDGLELINFEGACLTYEGEINKLAVNVAFGRQMLGIHYRFDGIQGLLLGETITV 216
            G   PNPV  S DGL LI F+G  LT  GE+NKLA N+A GR   G+H+R DGI+GL LGE + +
Sbjct:  428 GFVLPNPVAASSDGLSLIPFQGPSLTIGGELNKLASNIALGRDAAGVHWRSDGIEGLKLGEAVAI 492          
BLAST of mRNA_F-serratus_M_contig6170.16971.1 vs. uniprot
Match: UPI001EEDBED7 (vanadium-dependent haloperoxidase n=1 Tax=Brevibacillus choshinensis TaxID=54911 RepID=UPI001EEDBED7)

HSP 1 Score: 73.6 bits (179), Expect = 4.430e-15
Identity = 33/61 (54.10%), Postives = 42/61 (68.85%), Query Frame = 1
Query:   34 PNPVFPSDDGLELINFEGACLTYEGEINKLAVNVAFGRQMLGIHYRFDGIQGLLLGETITV 216
            PNPV  S DGL L+ + GA LT   E+NKLA N+A GR   G+H+R DGI+GL LGE + +
Sbjct:   39 PNPVEASPDGLSLLPYSGAPLTLGNELNKLAANIALGRDTAGVHWRSDGIEGLKLGEAVAI 99          
BLAST of mRNA_F-serratus_M_contig6170.16971.1 vs. uniprot
Match: S4XN83_SORCE (Uncharacterized protein n=4 Tax=Sorangium cellulosum TaxID=56 RepID=S4XN83_SORCE)

HSP 1 Score: 77.8 bits (190), Expect = 4.500e-15
Identity = 35/61 (57.38%), Postives = 43/61 (70.49%), Query Frame = 1
Query:   34 PNPVFPSDDGLELINFEGACLTYEGEINKLAVNVAFGRQMLGIHYRFDGIQGLLLGETITV 216
            PNPV  SDDGL L+ + G  LT  GE+NKLA N+A GR   G+HYR DG+ G+LLGE I +
Sbjct:  437 PNPVVASDDGLSLVPYTGPALTVGGELNKLATNIAHGRDGGGVHYRSDGVAGMLLGEAIAL 497          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6170.16971.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
O82433_FUCDI5.440e-43100.00Vanadium bromoperoxidase n=1 Tax=Fucus distichus T... [more]
PRXV_ASCNO6.650e-3886.30Vanadium-dependent bromoperoxidase n=1 Tax=Ascophy... [more]
B7ZGM6_9PHAE3.070e-2564.38Putative vanadium-dependent iodoperoxidase 3 n=1 T... [more]
A0A3G3BM28_SACJA3.870e-2464.38Vanadium-dependent iodine peroxidase n=1 Tax=Sacch... [more]
Q4LDE6_9PHAE2.490e-2362.34Vanadium-dependent iodoperoxidase 1 n=1 Tax=Lamina... [more]
A0A4Y7RBA7_9FIRM1.780e-1558.06PAP2 superfamily protein n=2 Tax=Pelotomaculum Tax... [more]
A0A1H9CXN4_9BACI2.360e-1552.46Glyoxalase/Bleomycin resistance protein/Dioxygenas... [more]
UPI001BC9DC0A2.410e-1555.38vanadium-dependent haloperoxidase n=1 Tax=Bacillus... [more]
UPI001EEDBED74.430e-1554.10vanadium-dependent haloperoxidase n=1 Tax=Brevibac... [more]
S4XN83_SORCE4.500e-1557.38Uncharacterized protein n=4 Tax=Sorangium cellulos... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6170contigF-serratus_M_contig6170:33113..33945 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score79.7
Seed ortholog evalue6.2e-13
Seed eggNOG ortholog767817.Desgi_2766
Hectar predicted targeting categoryother localisation
EggNOG free text desc.PAP2 superfamily
EggNOG OGs1USD9@1239,COG0671@1,COG0671@2
COG Functional cat.I
Best tax levelFirmicutes
Best eggNOG OGNA|NA|NA
Exons2
Model size221
Cds size219
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931910.698978-CDS-F-serratus_M_contig6170:33114..331871622931910.698978-CDS-F-serratus_M_contig6170:33114..33187Fucus serratus maleCDSF-serratus_M_contig6170 33115..33187 -
1690964053.600073-CDS-F-serratus_M_contig6170:33114..331871690964053.600073-CDS-F-serratus_M_contig6170:33114..33187Fucus serratus maleCDSF-serratus_M_contig6170 33115..33187 -
1622931910.7143724-CDS-F-serratus_M_contig6170:33799..339451622931910.7143724-CDS-F-serratus_M_contig6170:33799..33945Fucus serratus maleCDSF-serratus_M_contig6170 33800..33945 -
1690964053.6116455-CDS-F-serratus_M_contig6170:33799..339451690964053.6116455-CDS-F-serratus_M_contig6170:33799..33945Fucus serratus maleCDSF-serratus_M_contig6170 33800..33945 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6170.16971.1prot_F-serratus_M_contig6170.16971.1Fucus serratus malepolypeptideF-serratus_M_contig6170 33115..33945 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6170.16971.1

>prot_F-serratus_M_contig6170.16971.1 ID=prot_F-serratus_M_contig6170.16971.1|Name=mRNA_F-serratus_M_contig6170.16971.1|organism=Fucus serratus male|type=polypeptide|length=73bp
LIGLDRGGECFPNPVFPSDDGLELINFEGACLTYEGEINKLAVNVAFGRQ
MLGIHYRFDGIQGLLLGETITVR
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mRNA from alignment at F-serratus_M_contig6170:33113..33945-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6170.16971.1 ID=mRNA_F-serratus_M_contig6170.16971.1|Name=mRNA_F-serratus_M_contig6170.16971.1|organism=Fucus serratus male|type=mRNA|length=833bp|location=Sequence derived from alignment at F-serratus_M_contig6170:33113..33945- (Fucus serratus male)
CTCATTGGCCTAGATCGGGGAGGTGAGTGCTTCCCTAACCCCGTGTTCCC AAGCGATGACGGCCTGGAACTAATCAACTTCGAAGGGGCATGCCTCACAT ATGAGGGAGAGATCAACAAGCTCGCGGTCAACGTCGCATTTGGGAGGTAA ATATTATGGGGGGCATGCAAGCTTCATGCAAACCTGTTTAAACTATGCTA TTCGAAGTTATACTTTGTGGAATTGAGTGCATGCTCCGTAACCGGCCTCG TACATTCCTCGGAGAGCTGGTTCGTATTGGGTAGCAAAGCGAGTCCATAC AAGCCACGGTATACATTGAAGGAGCGCTCCAAGATCACGTGTAACTTCGC ATAGTCATCGCGGTTCATATCGAGGTGTCGATTTTCGGTTAGCTGTTCAT CCGTGGTCTCGTTTTCAGAGTCCAGAACCAACAGAAAAAGCACGAGGCAT ATCAAACAAAGGCATGCACTGTAGCATGCACAACACATAAACGGGAACGT CGGCTAGCATATAAAGTATTACAGTTTCCTAGTGGGTACTAAGGAAATGA AGCCATAGAAGATATTCATTCCATTCACCGTGCTGGAGTAACCCCCGACA AGATCATGGATGCGCAGTAAATCATTCCAGTTAGAAAGAGCATATACAAT ACACTATAACTCCTAATGCAGATTGTCGTTGGAAATGTTTGCGTGGTCAT TCGATAGATGTTTGACTGTCAGGTGTCACGCTGTTTCCGTTTTATTTGGT GATTGCAGGCAGATGCTGGGCATCCACTATCGGTTCGACGGTATTCAAGG CCTACTCCTCGGAGAGACAATCACTGTACGAAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig6170:33113..33945-

>mRNA_F-serratus_M_contig6170.16971.1 ID=mRNA_F-serratus_M_contig6170.16971.1|Name=mRNA_F-serratus_M_contig6170.16971.1|organism=Fucus serratus male|type=CDS|length=438bp|location=Sequence derived from alignment at F-serratus_M_contig6170:33113..33945- (Fucus serratus male)
CTCATTGGCCTAGATCGGGGAGGTGAGTGCTTCCCTAACCCCGTGTTCCC
AAGCGATGACGGCCTGGAACTAATCAACTTCGAAGGGGCATGCCTCACAT
ATGAGGGAGAGATCAACAAGCTCGCGGTCAACGTCGCATTTGGGAGCTCA
TTGGCCTAGATCGGGGAGGTGAGTGCTTCCCTAACCCCGTGTTCCCAAGC
GATGACGGCCTGGAACTAATCAACTTCGAAGGGGCATGCCTCACATATGA
GGGAGAGATCAACAAGCTCGCGGTCAACGTCGCATTTGGGAGGCAGATGC
TGGGCATCCACTATCGGTTCGACGGTATTCAAGGCCTACTCCTCGGAGAG
ACAATCACTGTACGAGCAGATGCTGGGCATCCACTATCGGTTCGACGGTA
TTCAAGGCCTACTCCTCGGAGAGACAATCACTGTACGA
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