mRNA_F-serratus_M_contig617.16970.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig617.16970.1 vs. uniprot
Match: A0A6H5L4C8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4C8_9PHAE) HSP 1 Score: 714 bits (1843), Expect = 1.120e-229 Identity = 471/1046 (45.03%), Postives = 611/1046 (58.41%), Query Frame = 1
Query: 118 EGARRLKEQLLS-SQDESRSCLLEAAATAGWFSRAPQMPMSLMELIDSAWDDFERGLDSRRSITVDREAFEHAVRYQDLTGLSCLLSHGCGLSAPLIERLVEACGPRSVRDCMLEAAASARNPLVPALGLLKALVFA--EVSCPLHASWFSWMRAALEKLVLQVLANLPVSARALNKRVTPAGVTSIFGRVNSDASGVNSGGTSFGAGGCGPGGSSAVHRFRRPAAAGSLAGRT---------------------------------GAGAISGRRDHGGSGGVGSAASASSDGASKGKPSGAGFASGPKARESLFVAEWVFEPESRTIGMRKPSFEGPLAAALGMSWPAFISSPLVGDFLWAKFTAGIELGCLPTAKTPDQWYSNKEPPK--------------------LADSAAAXXXXXXXXXXXXXXXSSITAPSSEPHAEGEPRRSACPVCLRQMDNGEWDITVAPGLRAILVGAATKPEVFYGMPAAAAVFEAFIYVCMLVVYVLTIYRANPGPISILEVVLYVWVLGLCLKQVNESTGAAKKIVLAARGGAAEANRSRKGVRRRRWRWQGGMTATVLLAGALICRLVGLLQDPEGHDRVALAESSQEWTLFDLSLALLVVAAPLLLLHLLVSAAAFSPGLGPTVQAMTLMAREAAKVLPILACILFGCALALHVLYGEGSSLLEGTDFVSPLTGGAEYVDGFRTFGASCGTVLGAGLGVIRPPLDADVPYGEPLYIILYLFGAAVALGMVSILAGVLANSESADPVKMDQEFHLEKARAIVRATETCRQNGLPAPLNIAQWILSTIVSVVQPTRSPSSKRRAAKEACLIQGRLIFWILMGLPSVAAVIALDLVSLGCFWWISWSRVFEGPQNLPRVSLSLLGTSLWCILGSPLRLLFAWLTAARLVVRGDREGRLSGEAVRRTVLKGRAGGDYDLARLLKRTRWGGGSSRSVSERGCSVADIVASIDDPLSRGSRFKEALCC-DDDMPSTLGQIKALAKRNQESQGRTVERLKSLEGSLLVALARIESGLERGGRVQQ 3084
EG+R LKEQLL+ S+D + +LE+ A AGW SR PQ+ +++EL+DSAWD+ ER +D R ++ ++EAF+HAVR +DL GLSC+LSHG LS LIE LVE+CGPR VRDC LEA ASARNPLVP+LGLL ++ A E SCPLHASWF M+ LEKLV+QVL NLPVSARA NKR G ++IF R+NS A +NSG + GAG + G + G + G GSG G + + +A+ESL VAEWVFEPES +GMR +FEGPLA AL M W + SPLV D LWAK TAG+EL P Q K + + ++AA XXXXXXXXXXXXXXX++ T A P S WDIT+AP L+A+LVG A++P+VFY +PAA +A +Y+ ML +Y + +YR PG I EV+LY+WVL +C +V G G +A+ R+ +GG A L +D G D V EW F +AL AAPLLL LL AAF P LGP V+A++L+AREA+KVLP LAC+L G ALALHV+YG+GS LLEGT+ L+GG +VDGFRTFG SC TV AG G I+ P D DVPYGEPLY++LY+F AA AL +VSI GVL+N + A PV+M++ F L +AR IVRA E R+N LP P N+AQ L+ +VS Q R S +R+A AC + GR +FW+++G +VA+ + L+L +L FWW S R+FE P+ PR+ LL T+L C + +PLRLL W+ A V++GD+ G+ + R+ VLKGR GGDY L+ LL+RTRWG G S +G SV DIVA++DDPL RG F+ C D+ PST+ Q+KALAKRN E++ R +RLK LE ++L LAR+++ E +VQQ
Sbjct: 715 EGSRLLKEQLLAGSEDREKGSILESVAMAGWLSRGPQLQPAVLELLDSAWDELERSVDDRLLVSAEQEAFQHAVRQRDLLGLSCVLSHGFRLSPVLIEGLVESCGPRCVRDCFLEAVASARNPLVPSLGLLSSVSTARKEASCPLHASWFLLMQNTLEKLVIQVLTNLPVSARAFNKRGIGGGRSNIFSRMNSFAP-MNSGSSMVGAGXXXXXXXXXXXXXXXXXHRRFVKGNSFNXXXXXXXXXXXXXXXXXXXXTNGTVTTGPHCGTVLLPGLGQEAGSGKAGDSRCGT-------------VIFNARAKESLLVAEWVFEPESEAVGMRGAAFEGPLALALQMGWTELVCSPLVLDLLWAKLTAGVELDVHSCGANPAQVPVEKRAREGRRGMLARSAPAPAVTAATPVHNTAAXXXXXXXXXXXXXXXXATATRVERMDPARSSPGNSKHAAA-------SWDITIAPSLQAVLVGVASRPDVFYRVPAARLALDAVVYLLMLAIYTVALYRVEPGSIGPWEVLLYIWVLSMCFSEVTTGAG----------GVVGDADTERR---------EGGTPAEPLRQRR---------RDYRG-DAV-----DGEWMCFQGFVALFASAAPLLLFRLLRGVAAFLPVLGPAVKAISLLAREASKVLPSLACLLLGTALALHVMYGDGSPLLEGTE----LSGG--FVDGFRTFGVSCRTVARAGFGDIQVP-DEDVPYGEPLYVLLYVFAAAGALALVSIYVGVLSNVKEASPVEMEKNFQLARARLIVRAAEASRRNVLPPPFNLAQGGLALVVSATQCHRHVSERRQAVSGACSVHGRFVFWLVLGPLAVASAMLLNLAALFYFWWFSVKRLFEDPRRAPRMLYVLLRTTLRCGVCAPLRLLGWWVAAVSCVLKGDKAGQRARTVARKAVLKGREGGDYHLSHLLRRTRWGAGGGSSSLAQGFSVRDIVAAMDDPLQRGGPFRNVTSCFADEGPSTVAQMKALAKRNHENEARISDRLKGLEVAVLGTLARMDAVSEETAKVQQ 1698
BLAST of mRNA_F-serratus_M_contig617.16970.1 vs. uniprot
Match: D7FN03_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN03_ECTSI) HSP 1 Score: 672 bits (1735), Expect = 7.560e-222 Identity = 464/1086 (42.73%), Postives = 596/1086 (54.88%), Query Frame = 1
Query: 1 MNELMTKDNGGWTPLVFAFRRGNRDVFIVAMQAFLDRGDEGARRLKEQLLS-SQDESRSCLLEAAATAGWFSRAPQMPMSLMELIDSAWDDFERGLDSRRSITVDREAFEHAVRYQDLTGLSCLLSHGCGLSAPLIERLVEACGPRSVRDCMLEAAASARNPLVPALGLLKALVFAEVSCPLHASWFSWMRAALEKLVLQVLANLPVSARALNKRVTPAGVTSIFGRVNSDASGVNSGGTSFGAGGCGPGGSSAVHRFRRPAAAG------------------------------------SLAGRTGAGAISGRRDHGGSGGVGSAASASSDGASKGKPSGAGFASGPKARESLFVAEWVFEPESRTIGMRKPSFEGPLAAALGMSWPAFISSPLVGDFLWAKFTAGIELGCLPTAKTPDQWYSN-------KEPPKLADSAAAXXXXXXXXXXXXXXXSSITAPSSEPHAEG-EPRRSACPVCLRQMDNGEWDITVAPGLRAILVGAATKPEVFYGMPAAAAVFEAFIYVCMLVVYVLTIYRANPGPISILEVVLYVWVLGLCLKQVNEST-GAAKKIVLAARGG--AAEANRSRKGVRRRRWRWQ---------GGMTATVLLAGALICRLVGLLQDPEGHDRVALAESSQEWTLFDLSLALLVVAAPLLLLHLLVSAAAFSPGLGPTVQAMTLMAREAAKVLPILACILFGCALALHVLYGEGSSLLEGTDFVSPLTGGAEYVDGFRTFGASCGTVLGAGLGVIRPPLDADVPYGEPLYIILYLFGAAVALGMVSILAGVLANSESADPVKMDQEFHLEKARAIVRATETCRQNGLPAPLNIAQWILSTIVSVVQPTRSPSSKRRAAKEACLIQGRLIFWILMGLPSVAAVIALDLVSLGCFWWISWSRVFEGPQNLPRVSLSLLGTSLWCILGSPLRLLFAWLTAARLVVRGDREGRLSGEAVRRTVLKGRAGGDYDLARLLKRTRWGGGSSRSVSERGCSVADIVASIDDPLSRGSRFKEALCC-DDDMPSTLGQIKALAKRNQESQGRTVERLKSLEGSLLVALARIESGLERGGRVQQ 3084
M+ELMTKDNGGW+PL+FA RRGNR VF AMQAF+DRG+EG+R LKEQLL+ S+D + +LE+ A AGW SR PQ+ +++EL+DSAWD+ ER LD R ++ R A+R LL CG + LEKLVLQVL NLPVSARA NKR G ++IF R+ G + GAG ++ G ++G GSG G S GA +A+ESL VAEWVFEPES +GMR +FEGPLA AL M W + SPLV D LWAK TAG+EL P QWY+ P +A XXXXXXXXXX EG +PRRS+ P L+ WDIT+AP L+A+LVG AT P+VFY +PAA +A +Y+ ML +Y + +YR PG + EV+LY+WVL +C +V G R G AAE R V+R R R GG +TV+L A++CRL +QD G D V EW F +ALL AAPLLL LL AAF P LGPTV+A++L+AREA+KVLP LAC+L G ALALHV+YG+GS LLEGT+ L GG+ VDGFRTFG SC TV AG G I+ LD DVPYGEPLY++LY+F AA ALG+VSIL GVL+N + A PV+M++ F L +AR IVRA E R+N LP P N+AQ L+ +VS Q R S +R+A AC + GR +FW+++G ++A+ + L+L +L CFWW S R+FE P+ PR+ LL T+L C + +PLRLL W+ A V++GD+ G+ + AVR+ VLKGR GGDY L+ LL+RTRWG G S +G SV DI A++DDPL RG F+ C D+ PST+ Q+KALAKRN E++ R +RLK LE ++L LAR+++ E +VQQ
Sbjct: 1 MSELMTKDNGGWSPLMFASRRGNRFVFFAAMQAFIDRGEEGSRLLKEQLLAGSEDREKGSILESVAMAGWLSRGPQLQPAVLELLDSAWDELERSLDDRLLVSGARGVLRAALR-------EGLLPGSCGFG----------------------------------------------------------QKTLEKLVLQVLTNLPVSARAFNKRGIGGGRSNIFSRMXXXXX-XXXGASMVGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTNGMVTMGPHCGTVLLAGLGQEAGSGKAGD----SRRGA---------VIFNARAKESLLVAEWVFEPESEAVGMRGAAFEGPLALALQMGWTELVCSPLVLDLLWAKLTAGVELDVHSCGANPAQWYARLPGPSAGSAPAPAVTAATPVHNTAXXXXXXXXXXXXXXXXXXATRVEGVDPRRSS-PGHLKNAA-ASWDITIAPSLQAVLVGVATGPDVFYRVPAARLALDAVVYLLMLAIYTVALYRVEPGSVDPWEVLLYIWVLSMCFSEVATGVWGVVGDADTDPREGGTAAEPLGQRHRVKRSRKRGSLCSCSSPFFGGKFSTVVLMAAMMCRLGDYVQD-SGGDAV-----DGEWRCFQGFVALLASAAPLLLFRLLGGVAAFLPVLGPTVKAISLLAREASKVLPSLACLLLGTALALHVMYGDGSPLLEGTE----LPGGS--VDGFRTFGVSCRTVARAGFGDIQV-LDEDVPYGEPLYVLLYVFAAAGALGLVSILVGVLSNLKEASPVEMEKNFQLARARLIVRAAEASRRNVLPPPFNLAQGGLALVVSATQCHRHVSERRQAVSGACSVHGRFVFWLVLGPLALASAMLLNLAALFCFWWFSVKRLFEDPRRAPRMLYVLLCTTLCCGVCAPLRLLGWWVAAVSCVLKGDKVGQRARTAVRKAVLKGREGGDYHLSHLLRRTRWGAGGGSSSLAQGFSVRDIAAAMDDPLQRGGPFRNVSSCFADEGPSTVAQMKALAKRNHENEARISDRLKGLEVAVLGTLARMDAVSEETAKVQQ 992
BLAST of mRNA_F-serratus_M_contig617.16970.1 vs. uniprot
Match: A0A6H5JJ53_9PHAE (Ion_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JJ53_9PHAE) HSP 1 Score: 69.7 bits (169), Expect = 3.720e-8 Identity = 64/201 (31.84%), Postives = 99/201 (49.25%), Query Frame = 1
Query: 31 GWTPLVFAFRRGNRDVFIVAMQAFLDRGDEGARRLKEQLLSSQDESRSC---LLEAAATAGWFSRAPQMPMSLMELIDSAWDDFERGLDSRRSITVDREAFEHAVRYQDLTGLSCLLSHGCGLSAPLIERLVE---ACGPRSVRDCMLEAAASARNPLVPALGLLKALVFAEVSCPLHASWFSWMRAALEKLVLQVLANLP 615
GWTPL A RG M A ++ + A LKEQL S D+ L+ AAA++ SR+ + L EL+ D E +RR R A ++A Y L LSCL+++GC +S + L+ A G + C+ + +ARNPL+PA +L+A+ A H + M++ +++LV ++L LP
Sbjct: 532 GWTPL-HAAARGXXXXMGAVMTALVNYME--ADELKEQLSQSHDKDSDLPTPLMFAAASSSLDSRS--LNPLLSELLGCMCDIDE----ARRQ----RTAVDYAAAYGRLDTLSCLIAYGCEISDQTVTTLLSGDLAVGAAAFNRCIWKGITTARNPLIPAHNVLRAVSRAADRDAKHRQFLLRMQSDVDELVQEMLQQLP 719 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig617.16970.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig617.16970.1 >prot_F-serratus_M_contig617.16970.1 ID=prot_F-serratus_M_contig617.16970.1|Name=mRNA_F-serratus_M_contig617.16970.1|organism=Fucus serratus male|type=polypeptide|length=1035bp MNELMTKDNGGWTPLVFAFRRGNRDVFIVAMQAFLDRGDEGARRLKEQLLback to top mRNA from alignment at F-serratus_M_contig617:279548..301208+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig617.16970.1 ID=mRNA_F-serratus_M_contig617.16970.1|Name=mRNA_F-serratus_M_contig617.16970.1|organism=Fucus serratus male|type=mRNA|length=21661bp|location=Sequence derived from alignment at F-serratus_M_contig617:279548..301208+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig617:279548..301208+ >mRNA_F-serratus_M_contig617.16970.1 ID=mRNA_F-serratus_M_contig617.16970.1|Name=mRNA_F-serratus_M_contig617.16970.1|organism=Fucus serratus male|type=CDS|length=6210bp|location=Sequence derived from alignment at F-serratus_M_contig617:279548..301208+ (Fucus serratus male)back to top |