mRNA_F-serratus_M_contig617.16968.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig617.16968.1
Unique NamemRNA_F-serratus_M_contig617.16968.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig617.16968.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig617contigF-serratus_M_contig617:273623..274823 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-25_002600.1
Exons2
Model size495
Cds size492
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931907.0712886-CDS-F-serratus_M_contig617:273622..2737991622931907.0712886-CDS-F-serratus_M_contig617:273622..273799Fucus serratus maleCDSF-serratus_M_contig617 273623..273799 +
1690964051.9779773-CDS-F-serratus_M_contig617:273622..2737991690964051.9779773-CDS-F-serratus_M_contig617:273622..273799Fucus serratus maleCDSF-serratus_M_contig617 273623..273799 +
1622931907.0924547-CDS-F-serratus_M_contig617:274506..2748211622931907.0924547-CDS-F-serratus_M_contig617:274506..274821Fucus serratus maleCDSF-serratus_M_contig617 274507..274821 +
1690964051.989771-CDS-F-serratus_M_contig617:274506..2748211690964051.989771-CDS-F-serratus_M_contig617:274506..274821Fucus serratus maleCDSF-serratus_M_contig617 274507..274821 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig617.16968.1prot_F-serratus_M_contig617.16968.1Fucus serratus malepolypeptideF-serratus_M_contig617 273623..274821 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig617.16968.1

>prot_F-serratus_M_contig617.16968.1 ID=prot_F-serratus_M_contig617.16968.1|Name=mRNA_F-serratus_M_contig617.16968.1|organism=Fucus serratus male|type=polypeptide|length=164bp
VNLPPISPASATSSGKFVLGVSPASATSHIGFSVASSVTSGSELMYSPSA
GELSSTGRESHHSLHHHSRVRPAQAPALGSSAKGFGRTRAGSNSSSEGGN
FQRGGGVDRHRGGGNGDDGNSGNSGGRAMNPGGDIDTTLERLRGTSTSKG
VGSGGMSEASVEAV
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mRNA from alignment at F-serratus_M_contig617:273623..274823+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig617.16968.1 ID=mRNA_F-serratus_M_contig617.16968.1|Name=mRNA_F-serratus_M_contig617.16968.1|organism=Fucus serratus male|type=mRNA|length=1201bp|location=Sequence derived from alignment at F-serratus_M_contig617:273623..274823+ (Fucus serratus male)
GTTAATCTGCCTCCGATTTCGCCGGCTTCCGCGACTTCCTCGGGGAAGTT
CGTGTTGGGGGTCTCGCCCGCTTCGGCGACGAGCCACATAGGGTTCTCGG
TGGCGTCCTCGGTGACTTCGGGCTCGGAGTTGATGTACTCACCATCCGCG
GGGGAGCTGTCCAGCACAGGGAGAGAGGTGGGTCGCCCCAGAGCACCGGA
GGGAGAGCGGGGGGTGGGGGATGTTGTTGGGTGAGGGAATCGTCTCTACA
ACTGTATGCGTGCTCGCGTCTTGTTTCGTTTTATATTTTTGCCCCATTGA
TTGCATTGGTCGCGCACCGGACTACCTATACTCTGTATGTGGCTCTTTTA
CCGGGGGTAAGTGATTCGCTCCCTTGCAACTACACAGGGTTTGGGAAAGA
GAGGGGAATGGTACTCTCTTCTGAGTATTTGAAGATCCTTTCGTACGAGT
AATATTTTTCAAGCTCGGGTAGTTGATGTTTTTATTTTCTCGTAGGTCGA
GCGAAGTAGGGAACAGGGGGGGACCGACGTTTGATTCTGTGTCCAATAGG
GAGCGCTGAAGTCGCGAACAACGCTGCCACTGCACTCGCACGTTCGTGGA
GCACATCACGATAGCTTCATCGCGTGCCCATGGCCCCTAGTCTAGATCGC
CCGGCTTACAATGCGTTGATCCACACACACACACACACGCGCGCGCGCGC
AAGTATCATTGGTCATTCCCCCTTGAGAGGACCAGTGCGAGTAGCATAGA
ATGACTAAGATGGCAGGACCGGGTTGCGGCGATTATGTGCAAATCAATGA
TGACGCACTCGCACAAAAAATGAACACGTGCGCGCCGATCGTCCGTCGCC
GAATTTCGCACCACCACCCTTCTGTTTCGATCAGAGTCACCATTCCCTGC
ATCACCACAGTAGAGTACGTCCTGCGCAAGCCCCCGCGTTGGGGTCCTCA
GCGAAGGGCTTTGGTCGGACTCGCGCTGGCAGCAATAGCAGCAGCGAAGG
CGGCAACTTCCAGCGCGGAGGAGGCGTTGATCGCCACCGTGGCGGCGGTA
ATGGTGATGACGGCAACAGTGGCAACAGTGGAGGGCGCGCGATGAACCCG
GGCGGTGACATAGACACCACGCTCGAGAGGTTAAGAGGCACCAGTACTAG
TAAAGGCGTAGGGAGTGGAGGCATGAGCGAGGCATCAGTAGAAGCCGTGG
C
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Coding sequence (CDS) from alignment at F-serratus_M_contig617:273623..274823+

>mRNA_F-serratus_M_contig617.16968.1 ID=mRNA_F-serratus_M_contig617.16968.1|Name=mRNA_F-serratus_M_contig617.16968.1|organism=Fucus serratus male|type=CDS|length=984bp|location=Sequence derived from alignment at F-serratus_M_contig617:273623..274823+ (Fucus serratus male)
GTTAATCTGCCTCCGATTTCGCCGGCTTCCGCGACTTCCTCGGGGAAGTT
CGTGTTGGGGGTCTCGCCCGCTTCGGCGACGAGCCACATAGGGTTCTCGG
TGGCGTCCTCGGTGACTTCGGGCTCGGAGTTGATGTACTCACCATCCGCG
GGGGAGCTGTCCAGCACAGGGAGAGAGGTTAATCTGCCTCCGATTTCGCC
GGCTTCCGCGACTTCCTCGGGGAAGTTCGTGTTGGGGGTCTCGCCCGCTT
CGGCGACGAGCCACATAGGGTTCTCGGTGGCGTCCTCGGTGACTTCGGGC
TCGGAGTTGATGTACTCACCATCCGCGGGGGAGCTGTCCAGCACAGGGAG
AGAGAGTCACCATTCCCTGCATCACCACAGTAGAGTACGTCCTGCGCAAG
CCCCCGCGTTGGGGTCCTCAGCGAAGGGCTTTGGTCGGACTCGCGCTGGC
AGCAATAGCAGCAGCGAAGGCGGCAACTTCCAGCGCGGAGGAGGCGTTGA
TCGCCACCGTGGCGGCGGTAATGGTGATGACGGCAACAGTGGCAACAGTG
GAGGGCGCGCGATGAACCCGGGCGGTGACATAGACACCACGCTCGAGAGG
TTAAGAGGCACCAGTACTAGTAAAGGCGTAGGGAGTGGAGGCATGAGCGA
GGCATCAGTAGAAGCCGTGAGTCACCATTCCCTGCATCACCACAGTAGAG
TACGTCCTGCGCAAGCCCCCGCGTTGGGGTCCTCAGCGAAGGGCTTTGGT
CGGACTCGCGCTGGCAGCAATAGCAGCAGCGAAGGCGGCAACTTCCAGCG
CGGAGGAGGCGTTGATCGCCACCGTGGCGGCGGTAATGGTGATGACGGCA
ACAGTGGCAACAGTGGAGGGCGCGCGATGAACCCGGGCGGTGACATAGAC
ACCACGCTCGAGAGGTTAAGAGGCACCAGTACTAGTAAAGGCGTAGGGAG
TGGAGGCATGAGCGAGGCATCAGTAGAAGCCGTG
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