mRNA_F-serratus_M_contig617.16966.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig617.16966.1
Unique NamemRNA_F-serratus_M_contig617.16966.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig617.16966.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig617contigF-serratus_M_contig617:234622..234930 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size297
Cds size195
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig617.16966.1prot_F-serratus_M_contig617.16966.1Fucus serratus malepolypeptideF-serratus_M_contig617 234724..234930 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931906.977015-UTR-F-serratus_M_contig617:234621..2347231622931906.977015-UTR-F-serratus_M_contig617:234621..234723Fucus serratus maleUTRF-serratus_M_contig617 234622..234723 -
1690964051.9403443-UTR-F-serratus_M_contig617:234621..2347231690964051.9403443-UTR-F-serratus_M_contig617:234621..234723Fucus serratus maleUTRF-serratus_M_contig617 234622..234723 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931906.9917321-CDS-F-serratus_M_contig617:234723..2348281622931906.9917321-CDS-F-serratus_M_contig617:234723..234828Fucus serratus maleCDSF-serratus_M_contig617 234724..234828 -
1690964051.9551823-CDS-F-serratus_M_contig617:234723..2348281690964051.9551823-CDS-F-serratus_M_contig617:234723..234828Fucus serratus maleCDSF-serratus_M_contig617 234724..234828 -
1622931907.008887-CDS-F-serratus_M_contig617:234840..2349301622931907.008887-CDS-F-serratus_M_contig617:234840..234930Fucus serratus maleCDSF-serratus_M_contig617 234841..234930 -
1690964051.9664783-CDS-F-serratus_M_contig617:234840..2349301690964051.9664783-CDS-F-serratus_M_contig617:234840..234930Fucus serratus maleCDSF-serratus_M_contig617 234841..234930 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig617.16966.1

>prot_F-serratus_M_contig617.16966.1 ID=prot_F-serratus_M_contig617.16966.1|Name=mRNA_F-serratus_M_contig617.16966.1|organism=Fucus serratus male|type=polypeptide|length=65bp
NAHKRSSRASDQNNTERSSLDAPKSRHKTPRSDRLQFRPPCTQQTPYLIK
DPRAASRGVRKSRE*
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mRNA from alignment at F-serratus_M_contig617:234622..234930-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig617.16966.1 ID=mRNA_F-serratus_M_contig617.16966.1|Name=mRNA_F-serratus_M_contig617.16966.1|organism=Fucus serratus male|type=mRNA|length=309bp|location=Sequence derived from alignment at F-serratus_M_contig617:234622..234930- (Fucus serratus male)
AACGCACACAAGCGATCGAGTCGCGCTTCTGACCAAAATAACACCGAGCG
GTCGTCGCTCGACGCCCCAAAGTCACGACACAAGACACCGGCGAGAGAAA
AGCGTTCTGACCGTCTTCAATTCCGGCCCCCCTGCACACAACAAACACCC
TATCTCATTAAAGATCCAAGGGCTGCTTCGAGGGGCGTGAGAAAGAGTCG
AGAGTAGCCTACGCTCGAGGCAAACAGCTCTTCTCGTCCATGAAAAAGCA
GCACCACCAGAATGCTGCAAGGTCAGCCCTCGGGCACGCTCCTTAGGCCT
GAGATTTCT
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Coding sequence (CDS) from alignment at F-serratus_M_contig617:234622..234930-

>mRNA_F-serratus_M_contig617.16966.1 ID=mRNA_F-serratus_M_contig617.16966.1|Name=mRNA_F-serratus_M_contig617.16966.1|organism=Fucus serratus male|type=CDS|length=390bp|location=Sequence derived from alignment at F-serratus_M_contig617:234622..234930- (Fucus serratus male)
AACGCACACAAGCGATCGAGTCGCGCTTCTGACCAAAATAACACCGAGCG
GTCGTCGCTCGACGCCCCAAAGTCACGACACAAGACACCGAACGCACACA
AGCGATCGAGTCGCGCTTCTGACCAAAATAACACCGAGCGGTCGTCGCTC
GACGCCCCAAAGTCACGACACAAGACACCGCGTTCTGACCGTCTTCAATT
CCGGCCCCCCTGCACACAACAAACACCCTATCTCATTAAAGATCCAAGGG
CTGCTTCGAGGGGCGTGAGAAAGAGTCGAGAGTAGCGTTCTGACCGTCTT
CAATTCCGGCCCCCCTGCACACAACAAACACCCTATCTCATTAAAGATCC
AAGGGCTGCTTCGAGGGGCGTGAGAAAGAGTCGAGAGTAG
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