mRNA_F-serratus_M_contig617.16964.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig617.16964.1 vs. uniprot
Match: D7FHF7_ECTSI (40S ribosomal protein S12 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHF7_ECTSI) HSP 1 Score: 254 bits (650), Expect = 1.520e-81 Identity = 126/141 (89.36%), Postives = 131/141 (92.91%), Query Frame = 1
Query: 22 MNEEVPQETTPAEVTEVKEISVLDALKEVLKKALIFDGLRRGLHECAKALDRGSARLCCLAKDCENPEYTQLVRALCDEGNVHLIMVDTRQELGQWAGLCKIGPDGEATKIVPCSCAVVTDYGEQSQALQVLLDHLKKGGD 444
M EEV E T + EVKEISVLDALKEVLKKALIFDGLRRGLHECAKALDRGSARLCCLAKDC+NPEYTQLVRALCDEGNVHLIMVDTRQELGQWAGLCKIG +GEATKIVPCSCAVVTDYGEQ+QAL VLL+HLKKGGD
Sbjct: 1 MKEEVAVEETGSPEVEVKEISVLDALKEVLKKALIFDGLRRGLHECAKALDRGSARLCCLAKDCDNPEYTQLVRALCDEGNVHLIMVDTRQELGQWAGLCKIGAEGEATKIVPCSCAVVTDYGEQTQALGVLLEHLKKGGD 141
BLAST of mRNA_F-serratus_M_contig617.16964.1 vs. uniprot
Match: A0A835YYB7_9STRA (40S ribosomal protein S12 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYB7_9STRA) HSP 1 Score: 226 bits (575), Expect = 3.610e-70 Identity = 109/148 (73.65%), Postives = 126/148 (85.14%), Query Frame = 1
Query: 1 MGAEDVEMNEEVPQETTPAEVTEVKEISVLDALKEVLKKALIFDGLRRGLHECAKALDRGSARLCCLAKDCENPEYTQLVRALCDEGNVHLIMVDTRQELGQWAGLCKIGPDGEATKIVPCSCAVVTDYGEQSQALQVLLDHLKKGGD 444
M +EDV E P PA +V E+SV DALKEVLKKALIFDGLRRGLHEC KALDRG+ARLCCLAKDCENPEYT+LVRALC+EG VH+IMV+TRQ+LGQWAGLCKI +GEATK+VPCSCAVVTD+G +S AL VL++HL+KGG+
Sbjct: 1 MSSEDVA---EAPAAAAPAPAADVAELSVPDALKEVLKKALIFDGLRRGLHECVKALDRGTARLCCLAKDCENPEYTRLVRALCEEGGVHIIMVNTRQQLGQWAGLCKIDAEGEATKVVPCSCAVVTDFGTESPALTVLMEHLRKGGE 145
BLAST of mRNA_F-serratus_M_contig617.16964.1 vs. uniprot
Match: A0A7S2CVX4_9STRA (40S ribosomal protein S12 n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CVX4_9STRA) HSP 1 Score: 196 bits (497), Expect = 1.980e-58 Identity = 91/130 (70.00%), Postives = 112/130 (86.15%), Query Frame = 1
Query: 43 ETTPAEVTEVKEISVLDALKEVLKKALIFDGLRRGLHECAKALDRGSARLCCLAKDCENPEYTQLVRALCDEGNVHLIMVDTRQELGQWAGLCKIGPDGEATKIVPCSCAVVTDYGEQSQALQVLLDHLK 432
E E EV+E+ VLDALKEVLKKAL+ DGL RGLHECAKALD+ +A+LCCLAKDC+NPEYT+LVRALC+EG V+L+MVDT ++LG+W GLCKI +GEATK+V CSCAV+T++GE+SQAL VLL+ LK
Sbjct: 12 EAAETEEVEVEEMGVLDALKEVLKKALVHDGLSRGLHECAKALDKHTAKLCCLAKDCDNPEYTKLVRALCEEGGVNLVMVDTGKQLGEWCGLCKIDEEGEATKVVRCSCAVITEFGEESQALNVLLEFLK 141
BLAST of mRNA_F-serratus_M_contig617.16964.1 vs. uniprot
Match: A0A7S2CD91_9STRA (40S ribosomal protein S12 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CD91_9STRA) HSP 1 Score: 187 bits (474), Expect = 5.030e-55 Identity = 92/137 (67.15%), Postives = 112/137 (81.75%), Query Frame = 1
Query: 28 EEVPQETTPAEV-TEVKEISVLDALKEVLKKALIFDGLRRGLHECAKALDRGSARLCCLAKDCENPEYTQLVRALCDEGNVHLIMVDTRQELGQWAGLCKIGPDGEATKIVPCSCAVVTDYGEQSQALQVLLDHLKK 435
EEV E E EV+E+ VLDALKEVLKKAL+ DGLRRGLHE KALDR SA+LCCLAKDC+NPEY +LVRALC+EG V+L+MV+T + LG+W GLCKI +GEA K+V CSCAVVT++GE++QAL +LL+ LKK
Sbjct: 4 EEVMDEVAAEEPEVEVEEMGVLDALKEVLKKALVHDGLRRGLHEGVKALDRHSAKLCCLAKDCDNPEYNKLVRALCEEGGVNLVMVETGKTLGEWCGLCKIDENGEAVKVVRCSCAVVTEFGEETQALNILLEFLKK 140
BLAST of mRNA_F-serratus_M_contig617.16964.1 vs. uniprot
Match: K0T7T2_THAOC (40S ribosomal protein S12 n=2 Tax=Thalassiosira TaxID=35127 RepID=K0T7T2_THAOC) HSP 1 Score: 180 bits (457), Expect = 1.700e-52 Identity = 88/128 (68.75%), Postives = 105/128 (82.03%), Query Frame = 1
Query: 61 VTEVKEISVLDALKEVLKKALIFDGLRRGLHECAKALDRGSARLCCLAKDCENPEYTQLVRALCDEGNVHLIMVDTRQELGQWAGLCKIGPDGEATKIVPCSCAVVTDYGEQSQALQVLLDHLKKGGD 444
V EV E++VLDALKEVLKKALI DGLR+GLHECAKALDR SARLCCLAKDCEN EY +L+RALC EG V +IMVD+ ++LG W GL K+ DGE K V SCAV+TD+GE+++AL VLLD+L+K D
Sbjct: 14 VEEVAEMNVLDALKEVLKKALIHDGLRKGLHECAKALDRRSARLCCLAKDCENEEYKKLIRALCAEGEVSVIMVDSGKDLGAWCGLAKLDADGEVKKAVRTSCAVITDFGEETRALTVLLDYLQKQSD 141
BLAST of mRNA_F-serratus_M_contig617.16964.1 vs. uniprot
Match: A0A7S1UV16_9STRA (40S ribosomal protein S12 n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UV16_9STRA) HSP 1 Score: 180 bits (456), Expect = 2.720e-52 Identity = 86/140 (61.43%), Postives = 109/140 (77.86%), Query Frame = 1
Query: 25 NEEVPQETTPAEVTEVKEISVLDALKEVLKKALIFDGLRRGLHECAKALDRGSARLCCLAKDCENPEYTQLVRALCDEGNVHLIMVDTRQELGQWAGLCKIGPDGEATKIVPCSCAVVTDYGEQSQALQVLLDHLKKGGD 444
++EV + P E E +SVLDALKEVLKKA+I DGL++GLHECAKALDR SARLCCLAKDCEN EY +L+RALC EG VH++MVD+ ++LG W GL K+ DG K V SCAV+TD+GE+++AL +LLD+L+K D
Sbjct: 3 DDEVDEAPAPVEEEEEVAMSVLDALKEVLKKAMIHDGLKKGLHECAKALDRRSARLCCLAKDCENEEYKKLIRALCAEGEVHVVMVDSGKDLGAWCGLAKLQDDGSVKKAVRTSCAVITDFGEETRALTILLDYLQKQAD 142
BLAST of mRNA_F-serratus_M_contig617.16964.1 vs. uniprot
Match: A0A7S2LXQ0_9STRA (40S ribosomal protein S12 n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LXQ0_9STRA) HSP 1 Score: 179 bits (454), Expect = 1.700e-51 Identity = 86/126 (68.25%), Postives = 104/126 (82.54%), Query Frame = 1
Query: 67 EVKEISVLDALKEVLKKALIFDGLRRGLHECAKALDRGSARLCCLAKDCENPEYTQLVRALCDEGNVHLIMVDTRQELGQWAGLCKIGPDGEATKIVPCSCAVVTDYGEQSQALQVLLDHLKKGGD 444
EV E++VLDALKEVLKKAL+ DGLR+GLHECAKALDR SARLCCLAKDCEN EY +L+RALC EG V +IMVD+ ++LG W GL K+ DGE K V SCAV+TD+GE+++AL VLLD+L+K D
Sbjct: 54 EVAEMNVLDALKEVLKKALVHDGLRKGLHECAKALDRRSARLCCLAKDCENEEYKKLIRALCAEGEVSVIMVDSGKDLGAWCGLAKLDADGEVKKAVRTSCAVITDFGEETRALSVLLDYLQKQAD 179
BLAST of mRNA_F-serratus_M_contig617.16964.1 vs. uniprot
Match: A0A7S1CEP1_9STRA (40S ribosomal protein S12 n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CEP1_9STRA) HSP 1 Score: 178 bits (451), Expect = 1.900e-51 Identity = 83/135 (61.48%), Postives = 104/135 (77.04%), Query Frame = 1
Query: 37 PQETTPAEVTEVKEISVLDALKEVLKKALIFDGLRRGLHECAKALDRGSARLCCLAKDCENPEYTQLVRALCDEGNVHLIMVDTRQELGQWAGLCKIGPDGEATKIVPCSCAVVTDYGEQSQALQVLLDHLKKGG 441
P+E T AE + + AL+EVLKKAL+ DGL+RGLHE AKALDRGSARLCCLA+DC+ P YT+LVRALC G + L+MV +ELG+WAGLCKI +G ATK+V CSC VTDYG++S+AL +LLD +K+ G
Sbjct: 13 PEEETKAEPEKTGPMDTRTALREVLKKALMHDGLKRGLHEAAKALDRGSARLCCLAEDCDEPNYTRLVRALCSNGGIPLVMVPKGEELGEWAGLCKIDKEGNATKVVKCSCVAVTDYGQESEALSILLDLIKQSG 147
BLAST of mRNA_F-serratus_M_contig617.16964.1 vs. uniprot
Match: A0A7S2HNH8_9STRA (40S ribosomal protein S12 n=2 Tax=Lithodesmiaceae TaxID=49247 RepID=A0A7S2HNH8_9STRA) HSP 1 Score: 177 bits (450), Expect = 2.010e-51 Identity = 88/137 (64.23%), Postives = 110/137 (80.29%), Query Frame = 1
Query: 40 QETTPAEVTEVKEI--SVLDALKEVLKKALIFDGLRRGLHECAKALDRGSARLCCLAKDCENPEYTQLVRALCDEGNVHLIMVDTRQELGQWAGLCKIGPDGEATKIVPCSCAVVTDYGEQSQALQVLLDHLKKGGD 444
+E PAEV EV+E+ SVLDALKEVLKKALI +GL++GLHECAKALDR +ARLCCLAKDCEN EY +L+RALC EG V +IMVD+ ++LG W GL K+ +G K V SCAV+TD+GE+++AL VLLD+L+K D
Sbjct: 5 EEAAPAEVEEVEEVEMSVLDALKEVLKKALIHNGLKKGLHECAKALDRKTARLCCLAKDCENEEYKKLIRALCAEGEVSVIMVDSGKDLGAWCGLAKLDDEGGVKKAVRTSCAVITDFGEETRALTVLLDYLQKQAD 141
BLAST of mRNA_F-serratus_M_contig617.16964.1 vs. uniprot
Match: A0A6T5YAX8_9STRA (40S ribosomal protein S12 n=3 Tax=Bacillariophyta TaxID=2836 RepID=A0A6T5YAX8_9STRA) HSP 1 Score: 176 bits (447), Expect = 5.830e-51 Identity = 85/131 (64.89%), Postives = 106/131 (80.92%), Query Frame = 1
Query: 52 PAEVTEVKEISVLDALKEVLKKALIFDGLRRGLHECAKALDRGSARLCCLAKDCENPEYTQLVRALCDEGNVHLIMVDTRQELGQWAGLCKIGPDGEATKIVPCSCAVVTDYGEQSQALQVLLDHLKKGGD 444
PA V EV E+SVLDALKEVLKK+++ DGLR+GLHECAKALDR +ARLCCLAKDCEN EY +L+RALC EG VH++MV++ +ELG W GL K+ DG K V SCAV+TD+GE+++AL +LLD L+K D
Sbjct: 12 PAVVEEV-EMSVLDALKEVLKKSMVHDGLRKGLHECAKALDRRAARLCCLAKDCENEEYKKLIRALCAEGEVHVVMVESGKELGAWCGLAKLNDDGSVKKAVRTSCAVITDFGEETRALTILLDFLQKQAD 141 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig617.16964.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig617.16964.1 >prot_F-serratus_M_contig617.16964.1 ID=prot_F-serratus_M_contig617.16964.1|Name=mRNA_F-serratus_M_contig617.16964.1|organism=Fucus serratus male|type=polypeptide|length=149bp MGAEDVEMNEEVPQETTPAEVTEVKEISVLDALKEVLKKALIFDGLRRGLback to top mRNA from alignment at F-serratus_M_contig617:227822..229982- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig617.16964.1 ID=mRNA_F-serratus_M_contig617.16964.1|Name=mRNA_F-serratus_M_contig617.16964.1|organism=Fucus serratus male|type=mRNA|length=2161bp|location=Sequence derived from alignment at F-serratus_M_contig617:227822..229982- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig617:227822..229982- >mRNA_F-serratus_M_contig617.16964.1 ID=mRNA_F-serratus_M_contig617.16964.1|Name=mRNA_F-serratus_M_contig617.16964.1|organism=Fucus serratus male|type=CDS|length=894bp|location=Sequence derived from alignment at F-serratus_M_contig617:227822..229982- (Fucus serratus male)back to top |