mRNA_F-serratus_M_contig6.16627.1 (mRNA) Fucus serratus male
|
Overview
Homology
BLAST of mRNA_F-serratus_M_contig6.16627.1 vs. uniprot
Match: D7FT55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT55_ECTSI) HSP 1 Score: 353 bits (907), Expect = 2.330e-106 Identity = 182/349 (52.15%), Postives = 226/349 (64.76%), Query Frame = 2
Query: 1175 SSYDEDEFVASILNDACAYNTFMCCWTQNDG-DGMEDNTDVCYNVDSSFTGLDF--PGESEGEVHCHGFGWEEGDDVLQTILPLYHFVRRFDHRNNQGYYGSVQDASECGCIETMPVVSRADCTTFSRDGLTACQNNDLSSHYKNRLGAPGGDLDFNLVGTCDNENAPVYVDYAYTMERSTSDSDDEDAVVEAVLEACAYNTYMCCWTQND-EGVEDNTDVCRVVDSPSVGQTTEYPGDSEGSTYCHGFGWEEGEALLTVQLPLYEYVVNYD-QEYRGYYGNIEGAPSCGCIEEMPVVSYANCTTFSRD-----KLTACQKNDLSKHYKNRMEAPGGDLDFNLVGTCDN 2191
S+YDED VA +L+ C ++T+MCCWT +DG DGM N+DVC +D G F P +SEG V+CHGF W EG DV ILPLYH+V+ G+YG+V+ A ECGCIE MP VS ++C+ +S +G+ C NN L S Y+ RLG P G +D NLV TCDNE+ P Y DY +C++NTYMCCWT+ND EG+ DNTDVCRVVD PS+G+T E+PGDSEG +CHGF W E + L L ++V N+D ++ RGYYGNIEGAP CGCIEEMPVVS A+CTT+ D K TAC KNDL Y+ E P G+L NLV TCDN
Sbjct: 148 STYDEDVEVAKLLDSTCEWDTYMCCWTGSDGADGMTANSDVCRVLDYPEEGDSFEMPRDSEGSVYCHGFAWVEGADVDTHILPLYHYVKNVGRTEEGGFYGNVEGAPECGCIEEMPQVSYSECSRYSWEGIVGCGNNGLLSQYRGRLGEPYGPMDDNLVRTCDNEDVPDY-DYG----------------------SCSHNTYMCCWTENDGEGMADNTDVCRVVDYPSMGETLEFPGDSEGEVHCHGFVWPEDATDKYIHL-LSQFVQNFDHRDRRGYYGNIEGAPMCGCIEEMPVVSEADCTTYDTDPEREGKFTACTKNDLRTRYE--AEYPTGEL-ANLVDTCDN 469
BLAST of mRNA_F-serratus_M_contig6.16627.1 vs. uniprot
Match: D7G2N2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2N2_ECTSI) HSP 1 Score: 356 bits (914), Expect = 6.670e-104 Identity = 179/357 (50.14%), Postives = 230/357 (64.43%), Query Frame = 2
Query: 1157 EESLATSSYDEDEFVASILNDACAYNTFMCCWTQNDGDG-MEDNTDVCYNVDSSFTG--LDFPGESEGEVHCHGFGWEEGDDVLQTILPLYHFVRRFDHRNNQGYYGSVQDASECGCIETMPVVSRADCTTFSRDGLTACQNNDLSSHYKNRLGAPGGDLDFNLVGTCDNENAPVYVDYAYTMERSTSDSDDEDAVVEAVLEACAYNTYMCCWTQND-EGVEDNTDVCRVVDSPSVGQTTEYPGDSEGSTYCHGFGWEEGEALLTVQLPLYEYVVNYD-QEYRGYYGNIEGAPSCGCIEEMPVVSYANCTTFSRD-----KLTACQKNDLSKHYKNRMEAPGGDLDFNLVGTCDNED 2197
E+ ++ S+YDED VA+IL + C +NT+MCCWT +DG G M NTDVC +D G L+ P + EG V+CHGF W +G D+ ILPLYH+V + ++ GYYG+V+ CGCIE MPVVS A C+ F R+G+ C N L SHYKNRL P G+L++NLV CDNE+ P Y C +NTYMCCWT+ND +G+ DNTDVCRV+D PS+G+TTEYPG+SEG +CHGF W E + L L ++V ++D ++ RGY+GNIEGAP CGCIEEMP VS A+CTT+ + K TAC KNDL Y+ E P G+LD NLVG CDNE+
Sbjct: 113 EDGMSCSTYDEDVDVANILPETCEWNTYMCCWTGHDGSGGMYGNTDVCRVLDYPEEGDVLELPRDDEGPVYCHGFAWADGADIDSHILPLYHYVTNVNRTDDGGYYGNVEGVPSCGCIEDMPVVSDAACSRFGREGIEPCGANSLRSHYKNRLDEPKGELEYNLVRECDNEDVPDYD-----------------------FRTCNHNTYMCCWTENDGQGMADNTDVCRVIDYPSMGETTEYPGESEGEVHCHGFVWPEDATDKYIHL-LAQFVQHFDHRDRRGYFGNIEGAPMCGCIEEMPQVSEADCTTYDNEPGREGKFTACTKNDLRTRYEE--EYPMGELD-NLVGECDNEE 442
BLAST of mRNA_F-serratus_M_contig6.16627.1 vs. uniprot
Match: D7G2N0_ECTSI (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D7G2N0_ECTSI) HSP 1 Score: 338 bits (867), Expect = 1.770e-100 Identity = 170/358 (47.49%), Postives = 225/358 (62.85%), Query Frame = 2
Query: 1157 EESLATSSYDEDEFVASILNDACAYNTFMCCWTQNDGD-GMEDNTDVCYNVDSSFTG--LDFPGESEGEVHCHGFGWEEGDDVLQTILPLYHFVRRFDHRNNQGYYGSVQDASECGCIETMPVVSRADCTTFSRDGLTACQNNDLSSHYKNRLGAPGGDLDFNLVGTCDNENAPVYVDYAYTMERSTSDSDDEDAVVEAVLEACAYNTYMCCWTQND-EGVEDNTDVCRVVDSPSVGQTTEYPGDSEGSTYCHGFGWEEGEALLTVQLPLYEYVVNYD-QEYRGYYGNIEGAPSCGCIEEMPVVSYANCTTFSRD-----KLTACQKNDLSKHYKNRMEAPGGDLDFNLVGTCDNEDS 2200
E+ ++ S+YDED VA+IL + C +NT+MCCWT +DG GM N DVC +D G L+ P + EG V+CHGF W + D+ ILPLYH+V + ++ GYYG+V+ CGCIE MPVVS A C+ F +G+ C +N L S YK +L P G++++NLV CDNE+ P Y C +NTYMCCWT+ND +G+ DNTDVCRV+D PS+G+TTEYPG+SEG +CHGF W E + L L ++V ++D ++ RGY+GNIEGAP CGCIEEMP VS A+CTT+ + K TAC NDL Y+ E P G+LD NLVG CDN ++
Sbjct: 156 EDGMSCSTYDEDVDVATILPETCEWNTYMCCWTGHDGSKGMYGNADVCRVLDYPEEGDVLELPRDDEGPVYCHGFAWADDADIDSHILPLYHYVTNVNRTDDGGYYGNVEGVPSCGCIEDMPVVSDAACSKFGGEGIEPCWDNSLRSQYKYKLDEPKGEMEYNLVRECDNEDVPDYD-----------------------FRTCNHNTYMCCWTENDGQGMADNTDVCRVIDYPSMGETTEYPGESEGEVHCHGFVWPEDATDKYIHL-LAQFVQHFDHRDRRGYFGNIEGAPMCGCIEEMPQVSEADCTTYDNEPGREGKFTACTNNDLRTRYEE--EYPMGELD-NLVGECDNAEA 486
BLAST of mRNA_F-serratus_M_contig6.16627.1 vs. uniprot
Match: D7FT54_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT54_ECTSI) HSP 1 Score: 324 bits (831), Expect = 2.650e-96 Identity = 169/350 (48.29%), Postives = 211/350 (60.29%), Query Frame = 2
Query: 1175 SSYDEDEFVASILNDACAYNTFMCCWTQNDG-DGMEDNTDVC--YNVDSSFTGLDFPGESEGEVHCHGFGWEEGDDVLQTILPLYHFVRRFDHRNNQGYYGSVQDASECGCIETMPVVSRADCTTFSRDGLTACQNNDLSSHYKNRLGAPGGDLDFNLVGTCDNENAPVYVDYAYTMERSTSDSDDEDAVVEAVLEACAYNTYMCCWTQND-EGVEDNTDVCRVVDSPSVGQTTEYPGDSEGSTYCHGFGWEEGEALLTVQLPLYEYVVNYDQ-EYRGYYGNIEGAPSCGCIEEMPVVSYANCTTFS-----RDKLTACQKNDLSKHYKNRMEAPGGDLDFNLVGTCDNE 2194
S+YDED VA +L + C +NT+MCCWT NDG DGM NTDVC ++ L+FP +SEG V+CHGFGW +G DV ILPLYH V GYYG+V+ A +CGC+E MPVVS ++C+ F DG+T C + L S+Y +R+ P G L+ NLV CDN + P D D C +TYMCCWT+ND +GV DNTDVCR+ D PS G+T EYPGDSEG +CHG W E + L L +YV +D +GYYGNIEGAP CGC E+MP VS A+CT +S D++ C NDL Y + P GDLD NLVG CDN+
Sbjct: 96 STYDEDVHVAYLLPEMCEWNTYMCCWTGNDGPDGMTSNTDVCRVWDYPEEGNSLEFPRDSEGSVYCHGFGWADGADVNTNILPLYHSVINTGRTEEGGYYGNVEGAPQCGCLEEMPVVSFSECSRFDGDGITDCGEHGLYSNYVSRIDEPNGPLEDNLVRICDNYDVP-----------------DFD------FRECDSHTYMCCWTENDAKGVLDNTDVCRIHDYPSAGETLEYPGDSEGDVHCHGIVWPEDATDKYIHL-LAQYVQTFDHIGNKGYYGNIEGAPMCGCAEDMPEVSKADCTNYSPTEEDEDRIRGCDPNDLRTRYD--VLYPDGDLD-NLVGRCDNQ 418
BLAST of mRNA_F-serratus_M_contig6.16627.1 vs. uniprot
Match: A0A6H5JT81_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT81_9PHAE) HSP 1 Score: 245 bits (626), Expect = 6.010e-70 Identity = 136/343 (39.65%), Postives = 178/343 (51.90%), Query Frame = 2
Query: 1199 VASILNDACAYNTFMCCWTQNDGD-GMEDNTDVCYNVDSSFTG--LDFPGESEGEVHCHGFGWEEGDDVLQTILPLYHFVRRFDHRNNQGYYGSVQDASECGCIETMPVVSRADCTTFSRDGLTACQNNDLSSHYKNRLGAPGGDLDFNLVGTCDNENAPVYVDYAYTMERSTSDSDDEDAVVEAVLEACAYNTYMCCWTQND-EGVEDNTDVCRVVDSPSVGQTTEYPGDSEGSTYCHGFGWEEGEALLTVQLPLYEYVVNYDQEYRGYYGNIEGAPSCGCIEEMPVVSYANCTTFSRD-----KLTACQKNDLSKHYKNRMEAPGGDLDFNLVGTCDNEDS 2200
VA+IL + C +NT+MCCWT +DG GM N DVC ++ G L+ P + EG V+CHGF W +G D+ ILPLYH+V + ++ GYYG+V+ CGCIE MPVVS A C+ F +G+ C +N L S YK +L P G++++NLV CDNE+ P Y C +NTYMCCWT+ND +G+ DNTDVCRV+D PS+G+TTEYPG SEG VS A+CTT+ + K TAC KNDL Y+ E P G+L NLVG CDN ++
Sbjct: 6 VATILPETCEWNTYMCCWTGHDGSKGMYGNADVCRVLNYPEEGDVLELPRDDEGPVYCHGFAWADGADIDSHILPLYHYVTNVNRTDDGGYYGNVEGVPSCGCIEDMPVVSDAACSKFGGEGIEPCWDNSLRSQYKYKLDEPKGEMEYNLVRECDNEDVPDYD-----------------------FRTCNHNTYMCCWTENDGQGMADNTDVCRVIDYPSMGETTEYPGGSEGE-----------------------------------------------------VSEADCTTYDNEPGREGKFTACTKNDLRTRYEE--EYPMGELS-NLVGECDNAEA 269
BLAST of mRNA_F-serratus_M_contig6.16627.1 vs. uniprot
Match: A0A6H5L319_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L319_9PHAE) HSP 1 Score: 229 bits (584), Expect = 4.590e-62 Identity = 148/448 (33.04%), Postives = 203/448 (45.31%), Query Frame = 2
Query: 617 YDDYEHVTSLLDGTCTFNTFMCCWTQNDG-DGMEDNTDVCRYVD--PTGVSIDFPGESEGETHCHGFGWPDGSEYVNYILPLYFFVRNFDHSQSRGYY-----GNVEGAPECGCIEHMPVVTRADCTTFATTGLEACQDNDLSKHYKNRMSAPGGDLDFNLVGTCDNENVSYNTPASTSMTTEGSSKTEESLATSSYDEDEFVASILNDACAYNTFMCCWTQNDGDGMEDNT----------------------------------------DVCYNVDSSFTG--LDFPGESEGEVHCHGFGWEEGDDVLQTILPLYHFVRRFDHRNNQGYYG---------------------------------------------SVQDASECGCIETMPVVSRADCTTFSRDGLTACQNNDLSSHYKNRLGA------PGGDLDFNLVGTCDN 1657
Y+++ V LLD TC ++ +MCCWT NDG DGM N+DVCR +D G S + P ESEG CHGF W +G++ +ILPLY +V+N ++ G+Y +VEG PECGCIE +P V+ ++C+ ++ G+ C +N L Y+ + P G +D NLV TCDNE++ YD +C++NT+MCC T+NDG GM +NT DVC +D G L+F G+SE E H HGF W E D + I L FV++FDHR+ +GYYG S++ A GC+E MPVVS AD TT+ D + ++ N L P G+L NLVGT DN
Sbjct: 32 YEEHVEVAKLLDSTCEWDPYMCCWTGNDGADGMTANSDVCRVLDYPEEGDSFEMPRESEGFVCCHGFAWAEGADVDTHILPLYHYVKNVGRTEEAGFYEMKLPDSVEGTPECGCIEEIPSVSCSECSRYSWEGIAGCGNNGLLSQYRGCLGEPCGPMDDNLVRTCDNEDIP------------------------DYDHG---------SCSHNTYMCCLTENDGQGMAENTVRRRVPAVASCVEFSCYSADRKDVGLTMLSVILGHLGATKDVCRVLDYPSVGGALEFAGDSEREAHRHGFVWTE-DATDKYIHLLSQFVQKFDHRDRRGYYGKYITVGKAAHNVIMVNGRTTGPGEDNTNNPLSPPPNVSHVILVVTSIEGAPMYGCVEEMPVVSEADGTTYDTDPE---REGKFTACTTNDLCTRYAEDYPTGEL-ANLVGTYDN 441
BLAST of mRNA_F-serratus_M_contig6.16627.1 vs. uniprot
Match: D7FT53_ECTSI (Imm downregulated 17 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT53_ECTSI) HSP 1 Score: 179 bits (453), Expect = 7.880e-48 Identity = 78/161 (48.45%), Postives = 109/161 (67.70%), Query Frame = 2
Query: 617 YDDYEHVTSLLDGTCTFNTFMCCWTQND-GDGMEDNTDVCRYVDPTGVSIDFPGESEGETHCHGFGWPDGSEYVNYILPLYFFVRNFDHSQSRG-YYGNVEGAPECGCIEHMPVVTRADCTTFATTGLEACQDNDLSKHYKNRMSAPGGDLDFNLVGTCDN 1093
YD+ V LLDGTC ++T+MCC+T +D G+G+ NTDVC ++ PG+SEG +CHGF WP+G++ N+ILPLY +V+N ++ G YYGNVEGAPECGCIE MP V+ A+C+ F+ G+ C + L Y R+ AP G+++ NLV +CDN
Sbjct: 24 YDEDLEVAKLLDGTCEWDTYMCCYTNHDSGEGVTANTDVCSVPSE---GLEMPGDSEGPVYCHGFAWPEGADVNNHILPLYHYVKNIGRTEEEGGYYGNVEGAPECGCIEEMPQVSFAECSRFSIDGIGECGEGGLYSQYNGRLDAPYGEMEHNLVRSCDN 181
BLAST of mRNA_F-serratus_M_contig6.16627.1 vs. uniprot
Match: A0A6H5L9G6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9G6_9PHAE) HSP 1 Score: 164 bits (414), Expect = 1.290e-42 Identity = 74/161 (45.96%), Postives = 102/161 (63.35%), Query Frame = 2
Query: 617 YDDYEHVTSLLDGTCTFNTFMCCWTQND-GDGMEDNTDVCRYVDPTGVSIDFPGESEGETHCHGFGWPDGSEYVNYILPLYFFVRNFDHSQSRG-YYGNVEGAPECGCIEHMPVVTRADCTTFATTGLEACQDNDLSKHYKNRMSAPGGDLDFNLVGTCDN 1093
YD+ V LLD TC ++T+MCC+T +D G+G+ NTDVC +EG +CHGF WPDG++ N+ILPLY +V+N ++ G YYG+VEGAPECGCIE MP V+ A+C+ F G+ C + L Y R+ AP G+++ NLV +CDN
Sbjct: 31 YDEDLEVAKLLDDTCEWDTYMCCFTNHDSGEGVTANTDVCSVP------------NEGSVYCHGFAWPDGADVNNHILPLYHYVKNIGRTEEEGGYYGSVEGAPECGCIEEMPQVSFAECSRFDIDGIVGCGEGGLYSQYNGRLGAPYGEMEHNLVRSCDN 179
BLAST of mRNA_F-serratus_M_contig6.16627.1 vs. uniprot
Match: D7G8C5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8C5_ECTSI) HSP 1 Score: 139 bits (350), Expect = 6.220e-33 Identity = 84/240 (35.00%), Postives = 116/240 (48.33%), Query Frame = 2
Query: 398 VSLVHHPKSEDRRRSAATMKLALNILLLVVSVTTXXXXXXXXXXXXXXXXXXTDPATGTSLGASHTVSYSPEDYDDYEHVTSLLDGTCTFNTFMCCWTQNDGDGMEDNTDVCRYVDPTGVSIDFPGESEGETHCHGFGWPDGS--EYVNYILPLYFFVRNFDHSQSRGYYGNVEGAPECGCIEHMPVVTRADCTTFATTGLE-----ACQDNDLSKHYKNRM-SAPGGDLDFNLVGTCDN 1093
+S H S R A TMK A +I+ V++V T A +S A S+ D++E V + C +NT+MCCW +G ++DNTDVC Y +FPG+SEG HCHGF WP+ + +++ Y+ F+ +H + Y GN+ GAP C C+E MP V+RADCT + L AC NDL + YK + G DL LV CDN
Sbjct: 47 LSFTPHSSSRPEHRPARTMKQAAHIIKAVLAVCIGPLLLAP-----------TVSARTSSAFADAENSFYDYSGDEFERVKNFDFNQCDYNTWMCCWDGRNGLAVKDNTDVCSYR-----GEEFPGDSEGPVHCHGFVWPENASDDFIKYLALDVAFI---NHVDEKAYTGNIPGAPVCHCLEEMPEVSRADCTQYRKANLAGSDFMACSKNDLRRAYKELYPTGRGRDL---LVKKCDN 264
BLAST of mRNA_F-serratus_M_contig6.16627.1 vs. uniprot
Match: D7G8D2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8D2_ECTSI) HSP 1 Score: 130 bits (328), Expect = 9.360e-31 Identity = 67/166 (40.36%), Postives = 92/166 (55.42%), Query Frame = 2
Query: 620 DDYEHVTSLLDGTCTFNTFMCCWTQNDGDGMEDNTDVCRYVDPTGVSIDFPGESEGETHCHGFGWPDGS--EYVNYILPLYFFVRNFDHSQSRGYYGNVEGAPECGCIEHMPVVTRADCTTFATTGLE-----ACQDNDLSKHYKNRM-SAPGGDLDFNLVGTCDN 1093
D++E V + C +NT+MCCW +G ++DNTDVC Y +FPG+SEG HCHGF WP+ + +++ Y+ F+ +H + Y GN+ GAP C C+E MP V+RADCT + L AC NDL + YK + G DL LV CDN
Sbjct: 46 DEFELVKNFDFNQCDYNTWMCCWDGRNGLAVKDNTDVCSYR-----GEEFPGDSEGPVHCHGFVWPENASDDFIKYLALDVAFI---NHVDEKAYTGNIPGAPVCHCLEEMPEVSRADCTQYRKANLAGSDFMACSKNDLRRAYKELYPTGRGRDL---LVKKCDN 200 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6.16627.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig6.16627.1 >prot_F-serratus_M_contig6.16627.1 ID=prot_F-serratus_M_contig6.16627.1|Name=mRNA_F-serratus_M_contig6.16627.1|organism=Fucus serratus male|type=polypeptide|length=592bp MKLALNILLLVVSVTTHLATSSSTTSASSETTSSTDPATGTSLGASHTVSback to top mRNA from alignment at F-serratus_M_contig6:1548047..1554517+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig6.16627.1 ID=mRNA_F-serratus_M_contig6.16627.1|Name=mRNA_F-serratus_M_contig6.16627.1|organism=Fucus serratus male|type=mRNA|length=6471bp|location=Sequence derived from alignment at F-serratus_M_contig6:1548047..1554517+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig6:1548047..1554517+ >mRNA_F-serratus_M_contig6.16627.1 ID=mRNA_F-serratus_M_contig6.16627.1|Name=mRNA_F-serratus_M_contig6.16627.1|organism=Fucus serratus male|type=CDS|length=3552bp|location=Sequence derived from alignment at F-serratus_M_contig6:1548047..1554517+ (Fucus serratus male)back to top |