mRNA_F-serratus_M_contig6.16617.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig6.16617.1 vs. uniprot
Match: A0A6H5KHU7_9PHAE (MFS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHU7_9PHAE) HSP 1 Score: 232 bits (591), Expect = 6.070e-72 Identity = 110/126 (87.30%), Postives = 122/126 (96.83%), Query Frame = 3
Query: 3 GASLSMVYPPSLKLISTWFKHRRGVALGTIIGGLALGSALPHLIVGAGGVGDRWRIVTYSTSAMSVLSGLMVIAFVPTGPFPFSKAKFSLRTLPRLASNRGVVLATLGYCAHMWELYGLWTWFLTL 380
GASLS+VYPPSLKLISTWFK+ RGVALGTIIGGL+LGSALPHLIVGAGGVGDRWRIVTYSTS ++++SG+MV+AFVPTGPFPFSKAKFSL+T+PRLA NRGVVLATL YCAHMWELYGLWTWFL+L
Sbjct: 202 GASLSLVYPPSLKLISTWFKNGRGVALGTIIGGLSLGSALPHLIVGAGGVGDRWRIVTYSTSILALISGVMVLAFVPTGPFPFSKAKFSLQTIPRLARNRGVVLATLAYCAHMWELYGLWTWFLSL 327
BLAST of mRNA_F-serratus_M_contig6.16617.1 vs. uniprot
Match: D8LQR1_ECTSI (Possible transporter, Major facilitator superfamily (MFS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQR1_ECTSI) HSP 1 Score: 209 bits (531), Expect = 1.100e-62 Identity = 98/114 (85.96%), Postives = 110/114 (96.49%), Query Frame = 3
Query: 39 KLISTWFKHRRGVALGTIIGGLALGSALPHLIVGAGGVGDRWRIVTYSTSAMSVLSGLMVIAFVPTGPFPFSKAKFSLRTLPRLASNRGVVLATLGYCAHMWELYGLWTWFLTL 380
+LISTWFK+ RGVALGTIIGGL+LGSALPHLIVGAGGVGDRWRIVTYSTS ++++SG+MV+AFVPTGPFPFSKAKFSL+T+PRLA NRGVVLATL YCAHMWELYGLWTWFL+L
Sbjct: 249 QLISTWFKYGRGVALGTIIGGLSLGSALPHLIVGAGGVGDRWRIVTYSTSILALISGVMVLAFVPTGPFPFSKAKFSLQTIPRLAGNRGVVLATLAYCAHMWELYGLWTWFLSL 362
BLAST of mRNA_F-serratus_M_contig6.16617.1 vs. uniprot
Match: A0A6M9PK21_9BURK (MFS transporter n=1 Tax=Polynucleobacter sp. LimPoW16 TaxID=1743162 RepID=A0A6M9PK21_9BURK) HSP 1 Score: 141 bits (355), Expect = 7.380e-38 Identity = 67/125 (53.60%), Postives = 88/125 (70.40%), Query Frame = 3
Query: 3 GASLSMVYPPSLKLISTWFKHRRGVALGTIIGGLALGSALPHLIVGAGGVGDRWRIVTYSTSAMSVLSGLMVIAFVPTGPFPFSKAKFSLRTLPRLASNRGVVLATLGYCAHMWELYGLWTWFLT 377
G L++VYPPSLKLI+TWF RGVALG ++G + LGSA PH I GG+ RW IV +T+ ++L L++ FV GPFPF +A F+L + ++ NRG+VLA+LGY HMWELY +W WFLT
Sbjct: 115 GMFLALVYPPSLKLIATWFTKGRGVALGALVGAITLGSASPHFINAIGGL--RWEIVIVATTLATLLGALILQLFVHEGPFPFPRAPFNLGRMGQVFKNRGIVLASLGYFGHMWELYAMWAWFLT 237
BLAST of mRNA_F-serratus_M_contig6.16617.1 vs. uniprot
Match: UPI00190D25A5 (MFS transporter n=1 Tax=Noviherbaspirillum pedocola TaxID=2801341 RepID=UPI00190D25A5) HSP 1 Score: 139 bits (350), Expect = 3.660e-37 Identity = 64/125 (51.20%), Postives = 86/125 (68.80%), Query Frame = 3
Query: 3 GASLSMVYPPSLKLISTWFKHRRGVALGTIIGGLALGSALPHLIVGAGGVGDRWRIVTYSTSAMSVLSGLMVIAFVPTGPFPFSKAKFSLRTLPRLASNRGVVLATLGYCAHMWELYGLWTWFLT 377
G L++VYPPSLKLI+TWF RGVALG ++G L LGSA+PHL+ GG+ RW++V +T+ ++++ MV FV GP+PF +A F R + NRG+V +LGY HMWELY +W WFLT
Sbjct: 110 GMFLALVYPPSLKLIATWFARGRGVALGVLVGALTLGSAMPHLVNAVGGL--RWQVVISATTILTLVGAAMVQLFVHEGPYPFPRAPFDPRRVTDALKNRGIVYVSLGYFGHMWELYAMWAWFLT 232
BLAST of mRNA_F-serratus_M_contig6.16617.1 vs. uniprot
Match: UPI001FE14329 (MFS transporter n=1 Tax=Methyloceanibacter sp. wino2 TaxID=2170729 RepID=UPI001FE14329) HSP 1 Score: 136 bits (343), Expect = 7.510e-37 Identity = 65/124 (52.42%), Postives = 86/124 (69.35%), Query Frame = 3
Query: 3 GASLSMVYPPSLKLISTWFKHRRGVALGTIIGGLALGSALPHLIVGAGGVGDRWRIVTYSTSAMSVLSGLMVIAFVPTGPFPFSKAKFSLRTLPRLASNRGVVLATLGYCAHMWELYGLWTWFL 374
G L+ VYPP+LKLISTWF+ RGVALG++IG L LGSA+PH I GG+ WRIV +TS S+L+ +++I + GP+PF+K KF + + +NR VL T+GY HMWELY +WTW L
Sbjct: 120 GVLLAAVYPPALKLISTWFRKGRGVALGSVIGALTLGSAMPHAINALGGL--DWRIVIVTTSIASLLAAVLMITLLREGPYPFAKTKFDPSQIKQALANRVFVLGTVGYLGHMWELYAMWTWLL 241
BLAST of mRNA_F-serratus_M_contig6.16617.1 vs. uniprot
Match: A0A7V9IC56_9ACTN (MFS transporter n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7V9IC56_9ACTN) HSP 1 Score: 136 bits (343), Expect = 2.140e-36 Identity = 66/123 (53.66%), Postives = 85/123 (69.11%), Query Frame = 3
Query: 3 GASLSMVYPPSLKLISTWFKHRRGVALGTIIGGLALGSALPHLIVGAGGVGDRWRIVTYSTSAMSVLSGLMVIAFVPTGPFPFSKAKFSLRTLPRLASNRGVVLATLGYCAHMWELYGLWTWF 371
G L+ VYPPSLKL STWF+ RGVALG ++G L +GSA PHL+ G GG+ WR V ++TSA++V+ GL+ VP GP PF +A+F ++ SNR V LA+LGY HMWELY +W WF
Sbjct: 89 GMFLAGVYPPSLKLSSTWFQKGRGVALGILVGALTIGSAAPHLVNGLGGL--EWRTVIWATSALTVIGGLVAGFLVPEGPHPFPQARFDPTQAGQVFSNRAVRLASLGYFGHMWELYAMWAWF 209
BLAST of mRNA_F-serratus_M_contig6.16617.1 vs. uniprot
Match: A0A2A3VH68_9GAMM (MFS transporter n=2 Tax=Xanthomonadaceae TaxID=32033 RepID=A0A2A3VH68_9GAMM) HSP 1 Score: 136 bits (343), Expect = 4.110e-36 Identity = 64/125 (51.20%), Postives = 87/125 (69.60%), Query Frame = 3
Query: 3 GASLSMVYPPSLKLISTWFKHRRGVALGTIIGGLALGSALPHLIVGAGGVGDRWRIVTYSTSAMSVLSGLMVIAFVPTGPFPFSKAKFSLRTLPRLASNRGVVLATLGYCAHMWELYGLWTWFLT 377
GA L++VYPP++KL++TWF RG+ALG +IG +++GSALPHL+ GG RW+ V TSA +V L++ V GP+PF +A+F L + + NRGVVLA+LGY HMWELY +W WF T
Sbjct: 114 GACLALVYPPAMKLVATWFVQGRGLALGVLIGAISVGSALPHLVNALGGA--RWQGVIMWTSAATVAGALVIALGVREGPYPFPRARFRLGDVAAIVRNRGVVLASLGYFGHMWELYAMWAWFAT 236
BLAST of mRNA_F-serratus_M_contig6.16617.1 vs. uniprot
Match: A0A349B4Y2_9ACTN (MFS transporter (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A349B4Y2_9ACTN) HSP 1 Score: 131 bits (330), Expect = 6.100e-36 Identity = 64/123 (52.03%), Postives = 81/123 (65.85%), Query Frame = 3
Query: 3 GASLSMVYPPSLKLISTWFKHRRGVALGTIIGGLALGSALPHLIVGAGGVGDRWRIVTYSTSAMSVLSGLMVIAFVPTGPFPFSKAKFSLRTLPRLASNRGVVLATLGYCAHMWELYGLWTWF 371
G L+ +YPP LK ++TWF+ RRG ALG ++G L LGSA+PHL+ G GGV RW +V TS ++V GL+ GPFPF KA F +PR ++ GV LATLGY HMWELY +W WF
Sbjct: 93 GFFLAGIYPPGLKSMATWFRLRRGTALGVMVGALTLGSAVPHLVNGLGGV--RWEVVIVVTSGLTVTGGLVAELAGRDGPFPFPKAVFDPTQVPRAFADPGVRLATLGYFGHMWELYAMWAWF 213
BLAST of mRNA_F-serratus_M_contig6.16617.1 vs. uniprot
Match: A0A3A3GQ25_9BURK (MFS transporter n=2 Tax=Noviherbaspirillum sedimenti TaxID=2320865 RepID=A0A3A3GQ25_9BURK) HSP 1 Score: 136 bits (342), Expect = 6.160e-36 Identity = 62/125 (49.60%), Postives = 87/125 (69.60%), Query Frame = 3
Query: 3 GASLSMVYPPSLKLISTWFKHRRGVALGTIIGGLALGSALPHLIVGAGGVGDRWRIVTYSTSAMSVLSGLMVIAFVPTGPFPFSKAKFSLRTLPRLASNRGVVLATLGYCAHMWELYGLWTWFLT 377
G L++VYPPSLK I+TWF RGVALG ++G + LGSA PHL+ GG+ W+IV +TSA + L+++ +V GP+PF +A F+ + ++ NRG+VLA++GY HMWELY +W WFLT
Sbjct: 117 GVFLALVYPPSLKFIATWFLRGRGVALGVLVGAVTLGSASPHLVNAIGGL--NWQIVIIATSAATAAGALLLVLYVNEGPYPFPRAPFNPGRVKQVFFNRGIVLASIGYFGHMWELYAMWAWFLT 239
BLAST of mRNA_F-serratus_M_contig6.16617.1 vs. uniprot
Match: A0A7J9ZZS5_9ACTN (MFS transporter n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7J9ZZS5_9ACTN) HSP 1 Score: 134 bits (337), Expect = 1.840e-35 Identity = 63/123 (51.22%), Postives = 84/123 (68.29%), Query Frame = 3
Query: 3 GASLSMVYPPSLKLISTWFKHRRGVALGTIIGGLALGSALPHLIVGAGGVGDRWRIVTYSTSAMSVLSGLMVIAFVPTGPFPFSKAKFSLRTLPRLASNRGVVLATLGYCAHMWELYGLWTWF 371
G L+ VYPP+ KL++TW + RG ALG + GG+ALGSA+PHL+ GG+ WR+V TSA++VL GL+ V GPFPF +A F R + ++ NRGV LA+LGY HMWEL+ +W WF
Sbjct: 89 GFFLAAVYPPAFKLMATWTRRARGTALGLLAGGIALGSAVPHLVNALGGL--DWRLVVSVTSALTVLGGLVAFGLVREGPFPFPRATFDPRQIGKVFKNRGVRLASLGYFGHMWELFAMWAWF 209 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6.16617.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig6.16617.1 >prot_F-serratus_M_contig6.16617.1 ID=prot_F-serratus_M_contig6.16617.1|Name=mRNA_F-serratus_M_contig6.16617.1|organism=Fucus serratus male|type=polypeptide|length=121bp MVYPPSLKLISTWFKHRRGVALGTIIGGLALGSALPHLIVGAGGVGDRWRback to top mRNA from alignment at F-serratus_M_contig6:978782..982679- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig6.16617.1 ID=mRNA_F-serratus_M_contig6.16617.1|Name=mRNA_F-serratus_M_contig6.16617.1|organism=Fucus serratus male|type=mRNA|length=3898bp|location=Sequence derived from alignment at F-serratus_M_contig6:978782..982679- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig6:978782..982679- >mRNA_F-serratus_M_contig6.16617.1 ID=mRNA_F-serratus_M_contig6.16617.1|Name=mRNA_F-serratus_M_contig6.16617.1|organism=Fucus serratus male|type=CDS|length=726bp|location=Sequence derived from alignment at F-serratus_M_contig6:978782..982679- (Fucus serratus male)back to top |