mRNA_F-serratus_M_contig6.16615.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig6.16615.1 vs. uniprot
Match: D8LQR2_ECTSI (Lrc5, mitochondrial YqeH-related GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQR2_ECTSI) HSP 1 Score: 199 bits (505), Expect = 1.120e-57 Identity = 97/107 (90.65%), Postives = 103/107 (96.26%), Query Frame = 2
Query: 8 VPGRGVTVSSVPGTTLDFLKVDLGEKRALYDTPGLLMPHTLTSRLNAEELRAAIPKKKVDHVTFRLGEGKVVLLGGLARVEVLEGRPFLLTFFVSNEVRLHPTDVTR 328
V GRGVTVSSVPGTTLDFLKVDLG+KRALYDTPGLL+PHTLTSRLNAEELRAAIPKKKVDHVTFR+GEGKVVL+GGLARVEV+ GRPFLLTFFVSN+VRLHPTD R
Sbjct: 520 VAGRGVTVSSVPGTTLDFLKVDLGDKRALYDTPGLLLPHTLTSRLNAEELRAAIPKKKVDHVTFRVGEGKVVLVGGLARVEVVTGRPFLLTFFVSNDVRLHPTDARR 626
BLAST of mRNA_F-serratus_M_contig6.16615.1 vs. uniprot
Match: A0A835YJZ8_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJZ8_9STRA) HSP 1 Score: 148 bits (373), Expect = 8.040e-40 Identity = 69/104 (66.35%), Postives = 85/104 (81.73%), Query Frame = 2
Query: 17 RGVTVSSVPGTTLDFLKVDLGEKRALYDTPGLLMPHTLTSRLNAEELRAAIPKKKVDHVTFRLGEGKVVLLGGLARVEVLEGRPFLLTFFVSNEVRLHPTDVTR 328
+G+TVS VPGTTLDFL+V++G LYDTPGL++PH LTSRL EEL++ IP K V+HVT RL EGK VL+GGLAR+E++ G+PFL TFFVSNEV+LH TD R
Sbjct: 312 QGLTVSIVPGTTLDFLRVNMGGDVCLYDTPGLILPHQLTSRLTPEELKSVIPAKAVEHVTLRLTEGKAVLVGGLARIELVSGKPFLFTFFVSNEVKLHMTDAAR 415
BLAST of mRNA_F-serratus_M_contig6.16615.1 vs. uniprot
Match: A0A4D9D9J5_9STRA (G domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D9J5_9STRA) HSP 1 Score: 148 bits (374), Expect = 3.970e-39 Identity = 68/105 (64.76%), Postives = 88/105 (83.81%), Query Frame = 2
Query: 14 GRGVTVSSVPGTTLDFLKVDLGEKRALYDTPGLLMPHTLTSRLNAEELRAAIPKKKVDHVTFRLGEGKVVLLGGLARVEVLEGRPFLLTFFVSNEVRLHPTDVTR 328
G VT S++PGTTLDF++VDLG+K +LYDTPGL++PH +T+ LN EEL+A IP+K+++HVT RL EGK VLLGGL R+++LEGRPFL TF+VSNEV+LH T R
Sbjct: 647 GSLVTTSALPGTTLDFIEVDLGDKVSLYDTPGLILPHQITTLLNTEELKAVIPQKRINHVTLRLKEGKSVLLGGLVRLDMLEGRPFLFTFYVSNEVKLHQTATDR 751
BLAST of mRNA_F-serratus_M_contig6.16615.1 vs. uniprot
Match: A0A7S3YK74_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YK74_HETAK) HSP 1 Score: 132 bits (332), Expect = 2.530e-36 Identity = 60/105 (57.14%), Postives = 83/105 (79.05%), Query Frame = 2
Query: 14 GRGVTVSSVPGTTLDFLKVDLGEKRALYDTPGLLMPHTLTSRLNAEELRAAIPKKKVDHVTFRLGEGKVVLLGGLARVEVLEGRPFLLTFFVSNEVRLHPTDVTR 328
G+ VT S +PGTTLDFLK+D+G L DTPGL++PH LT L+ +EL+A +P+ +V+HVT R+GEGK VL+GGLA++++LEG+PF TFFVSN+V+LH T +
Sbjct: 10 GKKVTTSPIPGTTLDFLKIDIGGT-LLIDTPGLILPHQLTLSLDPKELKAVLPESQVEHVTLRVGEGKSVLMGGLAKLDMLEGKPFFFTFFVSNKVKLHQTSTEK 113
BLAST of mRNA_F-serratus_M_contig6.16615.1 vs. uniprot
Match: A0A1E7F2J8_9STRA (G domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F2J8_9STRA) HSP 1 Score: 133 bits (335), Expect = 6.990e-36 Identity = 60/103 (58.25%), Postives = 83/103 (80.58%), Query Frame = 2
Query: 23 VTVSSVPGTTLDFLKVDLGEKRALYDTPGLLMPHTLTSRLNAEELRAAIPKKKVDHVTFRLGEGKVVLLGGLARVEVL-EGRPFLLTFFVSNEVRLHPTDVTR 328
+T S +PGTTL F+K+DLG+ + +YDTPGLL+P T+T L EELR PKKKV+ +TFR+ GK VL+GGLA++EV+ + +PFLLTFFV+N+++LHPTD +R
Sbjct: 87 LTTSPLPGTTLKFIKIDLGDGQNIYDTPGLLVPGTITQLLTPEELRVVCPKKKVEPITFRVASGKCVLIGGLAKIEVIGDSKPFLLTFFVANDIKLHPTDSSR 189
BLAST of mRNA_F-serratus_M_contig6.16615.1 vs. uniprot
Match: A0A7S2E702_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2E702_TRICV) HSP 1 Score: 134 bits (337), Expect = 2.330e-35 Identity = 63/103 (61.17%), Postives = 81/103 (78.64%), Query Frame = 2
Query: 23 VTVSSVPGTTLDFLKVDLGEKRALYDTPGLLMPHTLTSRLNAEELRAAIPKKKVDHVTFRLGEGKVVLLGGLARVEVL-EGRPFLLTFFVSNEVRLHPTDVTR 328
VTVS +PGTTL F+KVD+G LYDTPGLL+P TLT +L EL+ +PKK+V+ +TFR+ GK VL+GGLAR+EV+ + +PFL TFFV NE++LHPTDV R
Sbjct: 218 VTVSPLPGTTLKFIKVDIGNGINLYDTPGLLVPGTLTQKLTPAELKVVVPKKQVEPITFRVASGKCVLVGGLARIEVVGDSKPFLFTFFVGNEIKLHPTDVDR 320
BLAST of mRNA_F-serratus_M_contig6.16615.1 vs. uniprot
Match: A0A7R9WQ60_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WQ60_9STRA) HSP 1 Score: 129 bits (324), Expect = 5.980e-35 Identity = 59/99 (59.60%), Postives = 79/99 (79.80%), Query Frame = 2
Query: 23 VTVSSVPGTTLDFLKVDLGEKRALYDTPGLLMPHTLTSRLNAEELRAAIPKKKVDHVTFRLGEGKVVLLGGLARVEVL-EGRPFLLTFFVSNEVRLHPT 316
VT S +PGTTL F+K+DLG+ R LYDTPGLL+P T+T L EEL+ PKK+V+ +TFR+ GK +++GGLARVEV + +PFLLTFFV+N+++LHPT
Sbjct: 17 VTASPLPGTTLKFIKIDLGDGRTLYDTPGLLVPGTITQLLTGEELKVVCPKKQVEPITFRVSSGKCIMIGGLARVEVFGDCKPFLLTFFVANDIKLHPT 115
BLAST of mRNA_F-serratus_M_contig6.16615.1 vs. uniprot
Match: A0A7S2LG86_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LG86_9STRA) HSP 1 Score: 135 bits (341), Expect = 7.180e-35 Identity = 63/103 (61.17%), Postives = 82/103 (79.61%), Query Frame = 2
Query: 23 VTVSSVPGTTLDFLKVDLGEKRALYDTPGLLMPHTLTSRLNAEELRAAIPKKKVDHVTFRLGEGKVVLLGGLARVEVL-EGRPFLLTFFVSNEVRLHPTDVTR 328
VT S +PGTTL F+KVDLG R +YDTPGL++P TLTSRL EL+ +PKK V+ V+FR+G GK VL+GGLAR+EV + +PFL TFFVSN+++LHPTD ++
Sbjct: 414 VTTSPLPGTTLKFIKVDLGNGRKMYDTPGLIVPGTLTSRLTPAELKMVVPKKPVEAVSFRVGPGKCVLIGGLARIEVASDSKPFLFTFFVSNDIKLHPTDASK 516
BLAST of mRNA_F-serratus_M_contig6.16615.1 vs. uniprot
Match: A0A7S2LA52_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LA52_9STRA) HSP 1 Score: 131 bits (329), Expect = 6.110e-34 Identity = 59/103 (57.28%), Postives = 83/103 (80.58%), Query Frame = 2
Query: 23 VTVSSVPGTTLDFLKVDLGEKRALYDTPGLLMPHTLTSRLNAEELRAAIPKKKVDHVTFRLGEGKVVLLGGLARVEVL-EGRPFLLTFFVSNEVRLHPTDVTR 328
VT S +PGTTL F++++LG+ RAL+DTPGLL+P LT RL EEL+ +PKK+V+ +TFR+ GK VL+GGLA+VE++ + +PFL TFFV+N+++LHPTD R
Sbjct: 222 VTTSPLPGTTLKFIRIELGKGRALFDTPGLLVPGCLTERLTPEELKIVVPKKRVEPITFRVASGKCVLVGGLAKVELIGDSKPFLFTFFVANDIKLHPTDSER 324
BLAST of mRNA_F-serratus_M_contig6.16615.1 vs. uniprot
Match: A0A7S4NA62_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NA62_9STRA) HSP 1 Score: 132 bits (332), Expect = 1.500e-33 Identity = 63/103 (61.17%), Postives = 80/103 (77.67%), Query Frame = 2
Query: 23 VTVSSVPGTTLDFLKVDLGEKRALYDTPGLLMPHTLTSRLNAEELRAAIPKKKVDHVTFRLGEGKVVLLGGLARVEVL-EGRPFLLTFFVSNEVRLHPTDVTR 328
VTVS +PGTTL F+KVDLG LYDTPGLL+P T+T RL EL+ +PKK+V+ VTFR+ GK VL+GGLAR+EV +PFL TFFV+N+++LHPTDV +
Sbjct: 455 VTVSPLPGTTLKFIKVDLGNGVKLYDTPGLLVPGTMTQRLTPAELKIVVPKKEVEPVTFRVASGKCVLVGGLARIEVTGNSKPFLFTFFVANDIKLHPTDVKK 557 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6.16615.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig6.16615.1 >prot_F-serratus_M_contig6.16615.1 ID=prot_F-serratus_M_contig6.16615.1|Name=mRNA_F-serratus_M_contig6.16615.1|organism=Fucus serratus male|type=polypeptide|length=120bp ANCPREGSDGQQRPRNDPGLLEGGSRREESALRHAGPPDAAHANVAPQCRback to top mRNA from alignment at F-serratus_M_contig6:915208..917970+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig6.16615.1 ID=mRNA_F-serratus_M_contig6.16615.1|Name=mRNA_F-serratus_M_contig6.16615.1|organism=Fucus serratus male|type=mRNA|length=2763bp|location=Sequence derived from alignment at F-serratus_M_contig6:915208..917970+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig6:915208..917970+ >mRNA_F-serratus_M_contig6.16615.1 ID=mRNA_F-serratus_M_contig6.16615.1|Name=mRNA_F-serratus_M_contig6.16615.1|organism=Fucus serratus male|type=CDS|length=720bp|location=Sequence derived from alignment at F-serratus_M_contig6:915208..917970+ (Fucus serratus male)back to top |