mRNA_F-serratus_M_contig6.16613.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6.16613.1
Unique NamemRNA_F-serratus_M_contig6.16613.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig6.16613.1 vs. uniprot
Match: A0A6H5KJW5_9PHAE (Peptide deformylase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJW5_9PHAE)

HSP 1 Score: 322 bits (825), Expect = 4.240e-105
Identity = 154/183 (84.15%), Postives = 166/183 (90.71%), Query Frame = 3 
Query:    3 VDPGEVEGTDLRVLKYPHPALRAENEEIEAFDDGLKKLAKDMFKVMYASKGVGLAAPQVGVNKRLMVFNPEGDPKNWLDEAVLVNPRIVATGKGKVIDEEGCLSFPGMRGNVERNNWVKVEAQNAKGKKIKKKYTDWTARIFQHEYDHLDGTVYIDHLTSEGRQKVQPVLDKLISDFGEGAAL 551
            VDPGEV G  LR+LKYPHPALRAENEEIE FDD LKKLA+DMFK+MYA+KGVGLAAPQVGVNKRLMVFNPEGD KNWLDEA+LVNP+IVA+GKGK+  EEGCLSFPGM G VER NWVKVEA NAKGKK+KKKYTDWTARIFQHEYDHLDGTVYIDHL+   R+KVQPVLDKL+SDFGE  AL
Sbjct:   95 VDPGEVAG--LRILKYPHPALRAENEEIEVFDDDLKKLARDMFKIMYAAKGVGLAAPQVGVNKRLMVFNPEGDAKNWLDEAILVNPKIVASGKGKITAEEGCLSFPGMEGKVERRNWVKVEAVNAKGKKVKKKYTDWTARIFQHEYDHLDGTVYIDHLSPSEREKVQPVLDKLVSDFGEDGAL 275
[Close]
BLAST of mRNA_F-serratus_M_contig6.16613.1 vs. uniprot
Match: A0A7S1U4W5_9STRA (Peptide deformylase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U4W5_9STRA)

HSP 1 Score: 273 bits (698), Expect = 6.020e-87
Identity = 127/183 (69.40%), Postives = 153/183 (83.61%), Query Frame = 3 
Query:    3 VDPGEVEGTDLRVLKYPHPALRAENEEIEAFDDGLKKLAKDMFKVMYASKGVGLAAPQVGVNKRLMVFNPEGDPKNWLDEAVLVNPRIVATGKGKVIDEEGCLSFPGMRGNVERNNWVKVEAQNAKGKKIKKKYTDWTARIFQHEYDHLDGTVYIDHLTSEGRQKVQPVLDKLISDFGEGAAL 551
            VDPG+V+GTDLR++KYPHPALRAEN E+EAFD+ LKK +++MFKVMYA++GVGLAAPQVGVNKRLMV+NPEGD + WL E VLVNPRIV   +    + EGCLSFP M G VERN W+KVEAQN KGKK+KKK+T W ARIFQHEYDHLDG VY D L ++ +++VQ  LD+L++DFGEG AL
Sbjct:   25 VDPGKVDGTDLRIVKYPHPALRAENAEVEAFDEDLKKFSREMFKVMYAAQGVGLAAPQVGVNKRLMVYNPEGDARKWLAEVVLVNPRIVERSEAVDEESEGCLSFPDMDGKVERNKWIKVEAQNLKGKKLKKKFTGWEARIFQHEYDHLDGVVYPDRLDAKEKKRVQERLDELVADFGEGGAL 207
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BLAST of mRNA_F-serratus_M_contig6.16613.1 vs. uniprot
Match: A0A7S1GJC1_CYCTE (Peptide deformylase n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GJC1_CYCTE)

HSP 1 Score: 266 bits (680), Expect = 1.070e-83
Identity = 129/186 (69.35%), Postives = 150/186 (80.65%), Query Frame = 3 
Query:    3 VDPGEVEGTDLRVLKYPHPALRAENEEI--EAFDDG-LKKLAKDMFKVMYASKGVGLAAPQVGVNKRLMVFNPEGDPKNWLDEAVLVNPRIVATGKGKVIDEEGCLSFPGMRGNVERNNWVKVEAQNAKGKKIKKKYTDWTARIFQHEYDHLDGTVYIDHLTSEGRQKVQPVLDKLISDFGEGAAL 551
            VDPG+VEGTDL+++KYPHPALRAENEEI  E   DG + KLAK+MF VMYA++GVGLAAPQVGVNKRLMV+NP GD K WLDE VLVNPRIV    G  ++ EGCLSFP M G+V+R+ W+KVEA   KG+K+KKK+  W ARIFQHEYDHLDG VYID L+ +GR  VQP LD+LI DFGEG AL
Sbjct:   59 VDPGKVEGTDLQIVKYPHPALRAENEEITEEELQDGTIAKLAKEMFLVMYAAEGVGLAAPQVGVNKRLMVYNPSGDSKKWLDEVVLVNPRIVQLSDGTDVEIEGCLSFPDMNGDVQRSKWIKVEALTPKGRKVKKKFNGWEARIFQHEYDHLDGVVYIDRLSEKGRSDVQPRLDELIQDFGEGGAL 244
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BLAST of mRNA_F-serratus_M_contig6.16613.1 vs. uniprot
Match: A0A1Z5KQL3_FISSO (Peptide deformylase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KQL3_FISSO)

HSP 1 Score: 260 bits (665), Expect = 8.360e-82
Identity = 126/186 (67.74%), Postives = 148/186 (79.57%), Query Frame = 3 
Query:    3 VDPGEVEGTDLRVLKYPHPALRAENE--EIEAFDDG-LKKLAKDMFKVMYASKGVGLAAPQVGVNKRLMVFNPEGDPKNWLDEAVLVNPRIVATGKGKVIDEEGCLSFPGMRGNVERNNWVKVEAQNAKGKKIKKKYTDWTARIFQHEYDHLDGTVYIDHLTSEGRQKVQPVLDKLISDFGEGAAL 551
            VDPG VEGT+LR++KYPHPALR  NE   +E   DG + KLAK+MF VMYA+ GVGLAAPQVGVNKRLMV+N  GDPK WLDE ++VNP IV   + + ++ EGCLSFPGM G VER+ W+KVEA N KGKK K+K+TDW ARIFQHEYDHLDGTVYID L  EGR KVQ  L++LI++FGEG AL
Sbjct:   34 VDPGIVEGTELRIVKYPHPALRKPNELVTVEELKDGSIAKLAKEMFMVMYAAAGVGLAAPQVGVNKRLMVYNQSGDPKKWLDEVIMVNPTIVEFSEARNVETEGCLSFPGMDGPVERSKWIKVEAMNMKGKKFKRKFTDWEARIFQHEYDHLDGTVYIDRLDEEGRSKVQHRLNELIAEFGEGGAL 219
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BLAST of mRNA_F-serratus_M_contig6.16613.1 vs. uniprot
Match: A0A7S2PCD3_9STRA (Peptide deformylase n=2 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PCD3_9STRA)

HSP 1 Score: 258 bits (659), Expect = 4.360e-80
Identity = 124/188 (65.96%), Postives = 148/188 (78.72%), Query Frame = 3 
Query:    3 VDPGEVEGTDLRVLKYPHPALRAENEEI---EAFDDG--LKKLAKDMFKVMYASKGVGLAAPQVGVNKRLMVFNPEGDPKNWLDEAVLVNPRIVATGKGKVIDEEGCLSFPGMRGNVERNNWVKVEAQNAKGKKIKKKYTDWTARIFQHEYDHLDGTVYIDHLTSEGRQKVQPVLDKLISDFGEGAAL 551
            VDPG VEGTDLRVLKYPHP+LRA N+EI   E    G  + K+AK+MF VMYA+ GVGLAAPQVG+NKRLMV+N  GDPK W+ E ++VNP IV   +   ++EEGCLSFP M G+V+R+ W+KVEAQN KGKKIKKK+  W ARIFQHEYDHLDG VYID LT +GR+++QP LD+LI  FGEG AL
Sbjct:   89 VDPGVVEGTDLRVLKYPHPSLRAPNDEIADEELTGPGCEISKIAKEMFLVMYATNGVGLAAPQVGINKRLMVYNEHGDPKKWMSEVIMVNPTIVEFSEASDVEEEGCLSFPDMGGDVDRSKWIKVEAQNLKGKKIKKKFRGWEARIFQHEYDHLDGKVYIDRLTEDGRKEIQPKLDELIDTFGEGGAL 276
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BLAST of mRNA_F-serratus_M_contig6.16613.1 vs. uniprot
Match: A0A7S1BIF6_9STRA (Peptide deformylase n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BIF6_9STRA)

HSP 1 Score: 256 bits (654), Expect = 9.220e-80
Identity = 122/186 (65.59%), Postives = 144/186 (77.42%), Query Frame = 3 
Query:    3 VDPGEVEGTDLRVLKYPHPALRAENEEI---EAFDDGLKKLAKDMFKVMYASKGVGLAAPQVGVNKRLMVFNPEGDPKNWLDEAVLVNPRIVATGKGKVIDEEGCLSFPGMRGNVERNNWVKVEAQNAKGKKIKKKYTDWTARIFQHEYDHLDGTVYIDHLTSEGRQKVQPVLDKLISDFGEGAAL 551
            VDPG VEGTDLRVL+YPHPALRAEN EI   E  D  + KLAK+MF VMYA++GVGLAAPQVGVNK+LMV+NP GD   WLDE  +VNP+I    +GK ++ EGCLSFPGM G V+R+ W+KVEA N KGKKIKKK+  W ARIFQHEYDHLDG VY D L  +G+ +VQ  LD+L+ +FGEG  L
Sbjct:   61 VDPGVVEGTDLRVLRYPHPALRAENSEISPEELKDGSIAKLAKEMFLVMYATQGVGLAAPQVGVNKKLMVYNPSGDKTKWLDEVTMVNPKITTFSEGKDVETEGCLSFPGMDGKVQRSKWIKVEAVNLKGKKIKKKFVGWEARIFQHEYDHLDGKVYTDRLDDDGKSEVQGRLDELVEEFGEGGVL 246
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BLAST of mRNA_F-serratus_M_contig6.16613.1 vs. uniprot
Match: A0A7S1YIG9_9STRA (Peptide deformylase n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YIG9_9STRA)

HSP 1 Score: 256 bits (655), Expect = 1.580e-79
Identity = 126/187 (67.38%), Postives = 146/187 (78.07%), Query Frame = 3 
Query:    3 VDPGEVEGTDLRVLKYPHPALRAENE---EIEAFDDGLKKLAKDMFKVMYASKGVGLAAPQVGVNKRLMVFNPEGDPKNWLDEAVLVNPRIVATGKGKVIDEEGCLSFPGMRGNVERNNWVKVEAQNAKGKKIKKKYTDWTARIFQHEYDHLDGTVYIDHLTSEGRQKVQPVLDKLISDF-GEGAAL 551
            VDPG VEGTDLRVLKYPHP+LRAEN    E E  D  + ++AK+MF VMYA+ GVGLAAPQVG+NKRLM+FN  GD   WLDE VLVNPRIV  G G  ++ EGCLSFPGM G V+RN W++VEA N +GKKIKKK+ DW ARIFQHEYDHLDGTVYIDHL  E R +VQP LD+LI ++ GE  A+
Sbjct:   87 VDPGVVEGTDLRVLKYPHPSLRAENTLVTEEELKDGSIAQIAKEMFLVMYAANGVGLAAPQVGINKRLMIFNEHGDKTKWLDEMVLVNPRIVKKGGGTDVETEGCLSFPGMNGPVQRNKWIQVEALNKRGKKIKKKFFDWEARIFQHEYDHLDGTVYIDHLAEEARAEVQPRLDELIEEYDGEDGAV 273
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BLAST of mRNA_F-serratus_M_contig6.16613.1 vs. uniprot
Match: A0A4D9D349_9STRA (Peptide deformylase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D349_9STRA)

HSP 1 Score: 253 bits (646), Expect = 2.050e-79
Identity = 126/183 (68.85%), Postives = 139/183 (75.96%), Query Frame = 3 
Query:    3 VDPGEVEGTDLRVLKYPHPALRAENEEIEAFDDGLKKLAKDMFKVMYASKGVGLAAPQVGVNKRLMVFNPEGDPKNWLDEAVLVNPRIVATGKGKVIDEEGCLSFPGMRGNVERNNWVKVEAQNAKGKKIKKKYTDWTARIFQHEYDHLDGTVYIDHLTSEGRQKVQPVLDKLISDFGEGAAL 551
            VDPGEVEGTDLRVLKYP P LR  N EI  F   +  LAKDMFKVMYA  GVGLAAPQVGVN+RLMVFNP+GD   WL+E +L NP IV       I EEGCLSFPGM G+VER+  +KV  QNAKGKK  KK+ DW ARIFQHEYDHLDG +Y+D L  E +QKVQPVLDKL+SDFG G AL
Sbjct:    5 VDPGEVEGTDLRVLKYPDPRLRGANAEITEFGPEVAALAKDMFKVMYAMNGVGLAAPQVGVNQRLMVFNPQGDRLKWLNEVILCNPVIVEKSGKTDIMEEGCLSFPGMAGDVERSLTIKVTFQNAKGKKFTKKFRDWEARIFQHEYDHLDGVLYMDRLVPESKQKVQPVLDKLVSDFGPGGAL 187
[Close]
BLAST of mRNA_F-serratus_M_contig6.16613.1 vs. uniprot
Match: W7U6W2_9STRA (Peptide deformylase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U6W2_9STRA)

HSP 1 Score: 255 bits (652), Expect = 4.030e-79
Identity = 127/183 (69.40%), Postives = 140/183 (76.50%), Query Frame = 3 
Query:    3 VDPGEVEGTDLRVLKYPHPALRAENEEIEAFDDGLKKLAKDMFKVMYASKGVGLAAPQVGVNKRLMVFNPEGDPKNWLDEAVLVNPRIVATGKGKVIDEEGCLSFPGMRGNVERNNWVKVEAQNAKGKKIKKKYTDWTARIFQHEYDHLDGTVYIDHLTSEGRQKVQPVLDKLISDFGEGAAL 551
            VDPGEVEGTDLRVLKYP P LRA N EI  F   +  LAKDMFKVMYA  GVGLAAPQVGVN+RLMVFNP+GD   WL+E +L NP IV       I EEGCLSFPGM G+VER+  +KV  QNAKGKK  KK+ DW ARIFQHEYDHLDG +Y+D L  E +QKVQPVLDKL+SDFG G AL
Sbjct:   88 VDPGEVEGTDLRVLKYPDPRLRAANAEITEFGPEVAALAKDMFKVMYAMNGVGLAAPQVGVNQRLMVFNPQGDRLKWLNEVILCNPAIVEKSGKTDIMEEGCLSFPGMAGDVERSLTIKVTFQNAKGKKFTKKFRDWEARIFQHEYDHLDGVLYMDRLVPESKQKVQPVLDKLVSDFGPGGAL 270
[Close]
BLAST of mRNA_F-serratus_M_contig6.16613.1 vs. uniprot
Match: A0A7S0E2U1_9CRYP (Peptide deformylase n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0E2U1_9CRYP)

HSP 1 Score: 254 bits (649), Expect = 1.730e-78
Identity = 118/174 (67.82%), Postives = 140/174 (80.46%), Query Frame = 3 
Query:    3 VDPGEVEGTDLRVLKYPHPALRAENEEIEAFDDGLKKLAKDMFKVMYASKGVGLAAPQVGVNKRLMVFNPEGDPKNWLDEAVLVNPRIVATGKGKVIDEEGCLSFPGMRGNVERNNWVKVEAQNAKGKKIKKKYTDWTARIFQHEYDHLDGTVYIDHLTSE-GRQKVQPVLDKL 521
            VDPGE+EGTDLRVLKYPHP LRA +EE+  FDD L+K  K+MF VMYAS+GVGLAAPQVG+NKR+MVFNPEGD K WL E  L+NP+IV   +G  ++ E CLSFPGM+G V R+ W+K+EAQ+ KGK IKKKYT WTAR+FQHEYDHL+G VYID L  E  RQ V+P LD+L
Sbjct:   90 VDPGEIEGTDLRVLKYPHPKLRAPDEEVTEFDDNLRKTIKEMFLVMYASRGVGLAAPQVGINKRIMVFNPEGDKKKWLQEIALINPKIVEMSEGTDVENEACLSFPGMQGKVRRHKWIKIEAQDLKGKPIKKKYTGWTARVFQHEYDHLEGIVYIDRLEDEEDRQAVKPKLDEL 263
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6.16613.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KJW5_9PHAE4.240e-10584.15Peptide deformylase n=1 Tax=Ectocarpus sp. CCAP 13... [more]
A0A7S1U4W5_9STRA6.020e-8769.40Peptide deformylase n=1 Tax=Phaeomonas parva TaxID... [more]
A0A7S1GJC1_CYCTE1.070e-8369.35Peptide deformylase n=1 Tax=Cyclophora tenuis TaxI... [more]
A0A1Z5KQL3_FISSO8.360e-8267.74Peptide deformylase n=2 Tax=Fistulifera solaris Ta... [more]
A0A7S2PCD3_9STRA4.360e-8065.96Peptide deformylase n=2 Tax=Skeletonema marinoi Ta... [more]
A0A7S1BIF6_9STRA9.220e-8065.59Peptide deformylase n=2 Tax=Corethron hystrix TaxI... [more]
A0A7S1YIG9_9STRA1.580e-7967.38Peptide deformylase n=1 Tax=Grammatophora oceanica... [more]
A0A4D9D349_9STRA2.050e-7968.85Peptide deformylase n=1 Tax=Nannochloropsis salina... [more]
W7U6W2_9STRA4.030e-7969.40Peptide deformylase n=1 Tax=Nannochloropsis gadita... [more]
A0A7S0E2U1_9CRYP1.730e-7867.82Peptide deformylase n=1 Tax=Hanusia phi TaxID=3032... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6contigF-serratus_M_contig6:875223..881945 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score202.6
Seed ortholog evalue1.2e-49
Seed eggNOG ortholog35128.Thaps30977
Preferred namePDF1B
KEGG koko:K01462
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0016787,GO:0016810,GO:0016811,GO:0018193,GO:0018206,GO:0019538,GO:0031365,GO:0036211,GO:0042586,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043686,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564
EggNOG free text desc.Removes the formyl group from the N-terminal Met of newly synthesized proteins
EggNOG OGs2XEWA@2836,COG0242@1,KOG3137@2759
Ec32 ortholog descriptionchloroplast peptide deformylase
Ec32 orthologEc-24_001990.1
EC3.5.1.88
COG Functional cat.J
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons6
Model size1351
Cds size429
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6.16613.1prot_F-serratus_M_contig6.16613.1Fucus serratus malepolypeptideF-serratus_M_contig6 875348..881148 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931841.2645247-UTR-F-serratus_M_contig6:875222..8753471622931841.2645247-UTR-F-serratus_M_contig6:875222..875347Fucus serratus maleUTRF-serratus_M_contig6 875223..875347 +
1690964021.0367668-UTR-F-serratus_M_contig6:875222..8753471690964021.0367668-UTR-F-serratus_M_contig6:875222..875347Fucus serratus maleUTRF-serratus_M_contig6 875223..875347 +
1622931841.4697654-UTR-F-serratus_M_contig6:881148..8819451622931841.4697654-UTR-F-serratus_M_contig6:881148..881945Fucus serratus maleUTRF-serratus_M_contig6 881149..881945 +
1690964021.1282372-UTR-F-serratus_M_contig6:881148..8819451690964021.1282372-UTR-F-serratus_M_contig6:881148..881945Fucus serratus maleUTRF-serratus_M_contig6 881149..881945 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931841.2815764-CDS-F-serratus_M_contig6:875347..8753561622931841.2815764-CDS-F-serratus_M_contig6:875347..875356Fucus serratus maleCDSF-serratus_M_contig6 875348..875356 +
1690964021.050083-CDS-F-serratus_M_contig6:875347..8753561690964021.050083-CDS-F-serratus_M_contig6:875347..875356Fucus serratus maleCDSF-serratus_M_contig6 875348..875356 +
1622931841.2959812-CDS-F-serratus_M_contig6:875816..8758951622931841.2959812-CDS-F-serratus_M_contig6:875816..875895Fucus serratus maleCDSF-serratus_M_contig6 875817..875895 +
1690964021.0654805-CDS-F-serratus_M_contig6:875816..8758951690964021.0654805-CDS-F-serratus_M_contig6:875816..875895Fucus serratus maleCDSF-serratus_M_contig6 875817..875895 +
1622931841.3150766-CDS-F-serratus_M_contig6:876718..8768401622931841.3150766-CDS-F-serratus_M_contig6:876718..876840Fucus serratus maleCDSF-serratus_M_contig6 876719..876840 +
1690964021.079921-CDS-F-serratus_M_contig6:876718..8768401690964021.079921-CDS-F-serratus_M_contig6:876718..876840Fucus serratus maleCDSF-serratus_M_contig6 876719..876840 +
1622931841.417608-CDS-F-serratus_M_contig6:877522..8776181622931841.417608-CDS-F-serratus_M_contig6:877522..877618Fucus serratus maleCDSF-serratus_M_contig6 877523..877618 +
1690964021.0885694-CDS-F-serratus_M_contig6:877522..8776181690964021.0885694-CDS-F-serratus_M_contig6:877522..877618Fucus serratus maleCDSF-serratus_M_contig6 877523..877618 +
1622931841.4347582-CDS-F-serratus_M_contig6:878343..8784091622931841.4347582-CDS-F-serratus_M_contig6:878343..878409Fucus serratus maleCDSF-serratus_M_contig6 878344..878409 +
1690964021.0993109-CDS-F-serratus_M_contig6:878343..8784091690964021.0993109-CDS-F-serratus_M_contig6:878343..878409Fucus serratus maleCDSF-serratus_M_contig6 878344..878409 +
1622931841.4499466-CDS-F-serratus_M_contig6:881091..8811481622931841.4499466-CDS-F-serratus_M_contig6:881091..881148Fucus serratus maleCDSF-serratus_M_contig6 881092..881148 +
1690964021.110182-CDS-F-serratus_M_contig6:881091..8811481690964021.110182-CDS-F-serratus_M_contig6:881091..881148Fucus serratus maleCDSF-serratus_M_contig6 881092..881148 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6.16613.1

>prot_F-serratus_M_contig6.16613.1 ID=prot_F-serratus_M_contig6.16613.1|Name=mRNA_F-serratus_M_contig6.16613.1|organism=Fucus serratus male|type=polypeptide|length=143bp
MFKVMYASKGVGLAAPQVGVNKRLMVFNPEGDPKNWLDEAVLVNPRIVAT
GKGKVIDEEGCLSFPGMRGNVERNNWVKVEAQNAKGKKIKKKYTDWTARI
FQHEYDHLDGTVYIDHLTSEGRQKVQPVLDKLISDFGEGAAL*
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mRNA from alignment at F-serratus_M_contig6:875223..881945+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6.16613.1 ID=mRNA_F-serratus_M_contig6.16613.1|Name=mRNA_F-serratus_M_contig6.16613.1|organism=Fucus serratus male|type=mRNA|length=6723bp|location=Sequence derived from alignment at F-serratus_M_contig6:875223..881945+ (Fucus serratus male)
AGGTGGATCCCGGAGAGGTGGAGGGCACCGACCTACGGGTCCTCAAGTAC
CCACATCCCGCGCTGCGCGCCGAGAACGAAGAAATCGAAGCTTTTGATGA
CGGCCTCAAGAAGCTTGCGAAGGACATGTTCAAGGCAGGTTTCATTCCTC
ACCCCCTTTCCCCCCCGCCCACACCACCCTCTTAGTACGACCTTATTCAC
TGAGGTATAAAAAGTGGGGTGAAGATGTTTGATCGGAAATGTGTTTCGGG
GCTCAGTTTAACCCACGGGGGCACGCCCCTGCTCGTCTGCTTCATGACTC
ACAATAGTCAGCAGCTAGAGTCAAGTCAGTTCCCGTTCCCGCGTCCTGAA
TATCACCAGCACCGTACAAAGAGCGTTTCGAGGCGCACAAGTTCGCTTGC
GCGCTTGTTTTCTTCCATCCAATCCCGTGTTAACTCTTGGATTGGTCATT
TCTAAGGCGGCGTTGTTGGAAAGCGGAgGGGGGGGGGGAGAGGGGTGCAC
GATGACCGGCACGCGGAATCTTGTCACACCGGCTGCCTTTTGAGGCTTCG
CCTTCCTCGCCGCTCGCTCCCCGCCCTCGCGGCTCTTACGGCAGGTGATG
TACGCTTCAAAGGGGGTGGGGCTAGCGGCGCCTCAGGTGGGCGTCAACAA
ACGCCTCATGGTTTTCAACCCGGGTAAGCTTTTTTTTTTTAAACCTGCAA
TGCTCATCCCTATTTTTACAAGTGGTCGTTTAAATACCCCGCTAGTAGAC
CTTGTGGCGTGTGCTCAGAATGTCGTAGTGGTAGACTGCGTCTTCTTATT
TGTGCAGACGGGGAAACACATCGAAGCCCACGAAGGGTTCACACAACAAA
TCACTGCTTGCCGGCGCTACGAATAGACGCAGCAACGCGCGCACAATCGG
AGGCGCAAGTCCGTCTTGCATGGCGATTTCGCGCTCATAAATATTGATGC
ATGATGCTTCTTGTGAGGTAGGGGAGGGGGGGGGGTACTAGGTGATAGGA
GGGGCTCCATGTCAATGTGTCGCCCTTGTCCGGCCTTTTTTTTTAGATCG
GGTGAGGAAGGTGGCCTTTGTACGTTAGCGCACGAGCTGGGTGGGTCATG
AGCTTGCCCGGGCGTCGTGTCGTTTCCTCAGGGGGTATTTCGATGATGAT
TGAGGCGGGCGTCTTTTTTTTTGCGTTTTGTTGTGCCTCTGATAGCTCGA
CCTGCTGGCTTGCAAGCGGAGGAGGAAGGAGACTGCCAGGCATTCGCGCT
CCCTCCCAGCCGCCGCATGCAGTCGGCCAGTAGCTCGTTGTTTGAGATTC
GTTTACGATCTTAATACCATTATAGTACTACGGCTGTGCTGTTGACAATG
TAATGTGCCGCAGTTGAGGTGTCACAAAAAGACGCAACAGATGTCTTGTG
TACCATATGCACAACAGTACGTACCGTATATAAGGTTCGTTACGCCCCCC
CCCCCCCCCCCCAACGTTGTCCCCATTGTCTATCGCGTCTCGAAAGAGGG
GGATCCGAAAAACTGGCTGGACGAGGCCGTGCTTGTCAACCCGCGCATTG
TCGCCACGGGGAAGGGGAAAGTTATCGACGAGGAGGGGTGCTTGTCGTTT
CCCGGGATGAGAGGCAATGTGAGACATGTCCGCGGAACCCCTCCCCCACC
GTCGAACTCCCGTTCTTCCGTGTAAAACTTGTCCGTTGCCAAAGGCGTAA
CAAATTATAATGAATGTCGACGAGAGCTTCGCGCCAAGTGAACGATGTAT
CCGGCGCTTACCGCTATTCCGTTAGCTTTATTTCCTGATTTTCCGCATAG
ATGAGCGGCCCTGTCCCATGTGTGAACACTGTTGTACGAACAATACGGGA
CTCGATTTTTGAGGTGCGGTTTGCTTCGAACGGGTCCGTGGTTTCAGCAT
CGAGAGGGCAGCGATGGGTCCCAGGCCCTGCGCGCGCGCTCGAGCGCCGC
GATTGATCCGCGAGCTCACTGGCTTGAAAAATTTTAGAAAGGCCTCGACG
CGTCTGCTCTCGTCGTTCTGACTGTCTAATACTTCGAAGTTGTTTTTCAT
TCGTGTAACAACGTCATCCTCGCCAGGTTGGTTTCAGCGATTAATGTTGG
CAGGAAAGTGGCCGAAACAAAACAACGGTCGTTGCTGACGCGCGTTAGGA
CTAACCCACTCGGCGTTTGGGGGCTCAAACCTACTTTCAGTCCCCCTTCC
TTGCCTGGCAGTCGACGCCGTACACTTGTACTCGTACAAGCGCCGCCGTT
GCGTGGCTTCGCGTTGATTTGAGTTGCGTCGCTGTGTCGGCCGAGGTCAG
GTGGAGAGGAACAACTGGGTGAAGGTGGAGGCGCAGAACGCGAAGGGGAA
GAAGATCAAGAAGAAGTACACCGACTGGACAGCGAGAATATTCCAGGTTG
GACAGGAAGAAAAGAACTGGGGGGCGGCGGTCGAAATGCGGTAGTCCTCG
TTGACTACTGTAGATGTTACTGCAGATGCGACGGGCGGACTTGACGCGGT
TGAGCGCGCCGCATCTGCGGAGCAGGGTTGCGAAGAGTGCCGGACATACA
CACGGGGAGGAACTATTGATATACTAATAATAGTATACTAGTATCAGCTG
CTTGTGGAACCACTGTTCCCTGGTGATAACTAAACTTATCGTCTGCACCG
TACGACGTGGGAATAGTGGTTTTTGGTCTGGTCGTCATTCTGTAGAGCCT
AGTACCCTCTTGTTCTACAGACATACCATGGTGAACCTGACATCAAATTC
TCAAGCGGAGTCTGTAAGTCAATGCTTGATTAGTTTTGGGCTAGTGTGTA
AATGTATCGCCTACAGAAAGCACGCTCCGCGCGCAGGGCCGTTTTCTGTC
CCCGCCCCCCCCCCCCCCCCCAAATGCCTCCAATACGGCAGACCGAGCAC
GGCATCCGCACGCGGTGTCTCTTCCTCCCGCGACTCGGGCCGGGGTGAAG
GGGTGAGATGTGGTGCAAGCAAGCCACGGCTTTACGTCCGGCTGAGACAC
CGCCCATGGTGCACATATCGTTTCGCCTCCTGCTGCTGCGCGCCTCCTTT
TTTTAGCGACGCGTTCCCTTGCCTGCCGTTCCCCCCGTTAACTCGCTTTT
TTTTATGAATCACAACTGTAGCATGAGTACGATCACCTGGATGGCACGGT
GTACATCGATCATTTGACTTCGGAGGGGAGGCAGAAGGTGAGCCACGAGA
GGCCGTGTATGCGACAAGACTCTTGAGGTAATACGCGCGTATTTGTTCGT
GTGTGTCTGCGCTGCCGAGTTGACCCTCCGTCCCTTGTGGTACTTGTTCC
AGCGGTCTCGAAACGGTATTAGTGTGCGCTGTTGATGAAATTTGACGTAC
GCATCTGAACAGCCGTCATATTTTTTGTATTTAAGTAGCTCGATAACCAA
CGCATACTGCTGTTCCTTCTTCTGAATCGTGGTGAAAAAAAAAATCCTGG
GAAACAAGCGCGCACACAAGGAGCGACTTCCTTTTTAGCTGAGTGCATTA
TTTTCGTAAGATGAGTATCTAGTGGGAGTATGGATGGCTTTTAACGGCGC
CAGGGTATACGGTATGGTATATCTCGTACGTAAGATTGTGTACTTCCGTT
TCGACAATCTGCAAGTTTGAAGGTTTATGCCATGGGGCATTTTAGTGTAG
ACGAGAAAGGGGGGAGGAAAGGAGGCAATGGCCTAATTTAAGAGCATTCA
GTGCCTTTTGGACTATTTCCGGGCGTACCGAAATACGATGGCGACAGAGA
AAGGTCTTGGCCATACATGATTGGTCAGCACCCGGTTTCACCCGGTTCTG
ACCAAAAACACGGCCGGGTCGGCCTGATCTGCTCTACTTTGGTCAGCTTC
CTCTCGGTTTTGGTCATACTATGTTCCCGTTCGGTGGGCTACTGGAATAG
ACCAGCCGGGACCACAAGAACCACAGCAGTAGTGCGCGAACTCAAACCAC
ACGCCACAGCGACAGCTGCCTGCATTCGCGACAAACGGCGGAGAAGCCCT
CTGGTTGCCATGGCTTCGTCCGGTGACGCCAGCCGCCAGCAGCATGTACA
TCAAGGCATGCTCTTCCCGGACACCCATACATTGCGGCAGAAAAGCAACC
CTCGATTTTGGGGTTGGCAACTGCAGCATCGAGCATAGCCCGAAAAGTGG
AGGAAATGCGCAACAAGTACGTCTGAAGCGGGTTCGAAGGACCCGGGAAG
GGTTGCCCGGCCACGATCCGGGCGCAAAAGAAGAATACGGGCGAGCGGAA
GTGCACCATAGAGAACGTTGTGCACGCTAACTACACTTGGGGGCGGCACG
CGAGGAACTATGCTCGCCATTGGACATATCGTGGCATGAACGGCTATCAG
CCACCGGGGGATGACGCGCCCTGCCCTGAAATCGAGGCCCAGAGTGGCAG
AAAAACAACGATGCGCACGATCAACCCGATATGTCCAATGGCGAGCGTGG
TTCCTCGCGTGACGCCCCCAGTGCAGTTTGCATGCACAACGTTCTCTATG
GTGCACTTCCACTCGCTCGTATTCTGCTTTTGCGCCCGAATCATGGTCGG
GCAGCCCTTCCCAGGTCCTTCGAACCCGCTTCAGACGTACTTGTTGCGCA
TTTCCTCCACTCTTCGTGCTAGGCTTGATGCCGCAGTTGCCAACCCCAAA
CGCGAGGGATGATTTTTCTGCCGCAATGTATTGGTGTCCGGGAAGAGCAT
ATATTGGTGAACTTGCTGCTGGTGGCTGACGTCACCGGACGAAGCCATGA
TAACCAGAGAGGGCTTCACCACTGTACGGCGCAAGTACATGCTGCTGTTG
TTGTGGTATCCCTATTCATCATCATCGGCCGCAAAATACACCACGTCGAG
TGTTCAAGTTAAGGTGTTTAAAGAAAAATCCGAACAGCACCTAGACTTTT
TGAGCATCCCCCGTAGGGGGAGGAAATGTCAAAACGTTTAGGCGGGGTCA
AAGGCTGCAGTGACAAAAACCTCTTCATGGTATTAAATAGGTTCCCTAAT
GTATATATCATTGGGTCAACAGTATAATGTCGGGGGGAAACCCACCGTTA
TACTGTACATTTACATTAATCTCCATGCAGGGACACCATAAAAGCATTGG
ACAAAAACCGAGACAGAGTAGTACTACCTCCAAATGGTATTAGTAATATT
GTACATACAACGTCCAAGCATGGTATATTAAAACATCATGCCACAACATA
TCCACAGGAGTATAAGGTTATTGATGAATATACCATTTCTGTTTGGGGTA
GACAGGGAGCTTAGGTTACACTAAATTATCTAGGCTCGGGTGGGTGTAAT
TAGTGGTCATATCTTATTCACCAATCAGTAATCAAGCAACACTAGTAGAA
TGGGAGAGGTTCATTAGTGTACTTCGTCCTACCAATAGTTGCCATCTATA
TTGGTATACTTTACCTTTCCATTATTAATCATGTAGGGTTATCCATATAA
GAGACGGGGAACTTTAGGTTTAAGAAAAGTCAGAGTATTTTAAGACAAAT
CAGAACATCCCCCTGGGGTATTACAACTAGGGCCAGCTCTTGTTGTCCGG
GCTGGTCTATTCGAGTAGCCCACCGAAGGGGAACATAACATGGCCAAAAC
TGGGTGGCAAGCTGACCAGAGTAGAGAGAAGATATTGTCGAACGGGTCGT
TTTTGGCCTGAACCGGGTGCAAATGTGTGCTCTGGCCAATCAGGCGAGGC
CGAGAACACTTTCTGTCGCCTTTGTATTTTGGTTCACCCGGAAAGGCGCC
GGGTGCTCCCGCTTTTTGGTCGTCGCCCCCCCCCCCCCAAAGGTCGCGCC
CTATTTGCTTTACTACGTACAGCGTTCGATGTTTTCCCGCGCCACACCAC
TTACGCCCCAATCACGCAGGTGCAGCCGGTATTAGACAAGCTCATCAGCG
ACTTCGGCGAGGGAGCGGCCTTGTGAATACGTGAATAGTGAAGCACTGTA
ACTGTTATGCTGCCCTTAGAGCCACCTGTGTTGAGGGGCGCGATCATATA
CAGTATGTTAAACGCGCTCGGCGTGGCGCGTGACGTTTTTAGGTTGTGAA
GCGCTACGGAAGAGATAGCTGTATGCCGTAAAATCTCTCTCGCTAACCGC
TCGTTGGCGGTAGGTCGTGTCTTGCACGTCCTCTCGAGCAAGCGAGGCAA
CCGCGGAATACTATGATACTTGAGCACGCGGCGATTTGGCACCTGGTATA
TGTTTTCTTGTAGCGACGATGATCGAAGCACGTCTCTTGTGATTTCTCCC
ATCTTGAGGAATCTCTCGTACGTGCCGGGGTTTCGTGAGAACCTGTGAAC
GCTGTAGTACGCTACTACGTGCTGTGTGTATGCCGTGTCTGTGTGGTACG
GCATACTGAGGTCGACTACGGAAGCCCGTCATGTGTGATTACCGGGGAAT
CAGGGTGCTTGCCTCCCTTGCCATGATTGCATCCAGTCCATCAATCTGAA
GGAGCCTACATGCCATGTTACAAACATTACGTCTCTGTCATAAACATGTT
TTGCCTATGAGACGAACCACCCTCATACATCGCCGTTTTTTTCTTCTGCA
GTGTGGGTCATACTACTGTCTACTTCGTGTACTACTGCTGTACCTCGGGA
ACAGTGTCCTATCAGGGGTCCGCGACCTACAAGTATTCTCCGAAGTCACA
CTGCGTACGCTCCCTCGTCGTGGTTTTTCAGGTTCATCATACAGAACGAG
GCAGTGGCTGTCTGTAATCTTGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig6:875223..881945+

>mRNA_F-serratus_M_contig6.16613.1 ID=mRNA_F-serratus_M_contig6.16613.1|Name=mRNA_F-serratus_M_contig6.16613.1|organism=Fucus serratus male|type=CDS|length=858bp|location=Sequence derived from alignment at F-serratus_M_contig6:875223..881945+ (Fucus serratus male)
ATGTTCAAGATGTTCAAGGTGATGTACGCTTCAAAGGGGGTGGGGCTAGC
GGCGCCTCAGGTGGGCGTCAACAAACGCCTCATGGTTTTCAACCCGGGTG
ATGTACGCTTCAAAGGGGGTGGGGCTAGCGGCGCCTCAGGTGGGCGTCAA
CAAACGCCTCATGGTTTTCAACCCGGAGGGGGATCCGAAAAACTGGCTGG
ACGAGGCCGTGCTTGTCAACCCGCGCATTGTCGCCACGGGGAAGGGGAAA
GTTATCGACGAGGAGGGGTGCTTGTCGTTTCCCGGGATGAGAGGCAATAG
GGGGATCCGAAAAACTGGCTGGACGAGGCCGTGCTTGTCAACCCGCGCAT
TGTCGCCACGGGGAAGGGGAAAGTTATCGACGAGGAGGGGTGCTTGTCGT
TTCCCGGGATGAGAGGCAATGTGGAGAGGAACAACTGGGTGAAGGTGGAG
GCGCAGAACGCGAAGGGGAAGAAGATCAAGAAGAAGTACACCGACTGGAC
AGCGAGAATATTCCAGGTGGAGAGGAACAACTGGGTGAAGGTGGAGGCGC
AGAACGCGAAGGGGAAGAAGATCAAGAAGAAGTACACCGACTGGACAGCG
AGAATATTCCAGCATGAGTACGATCACCTGGATGGCACGGTGTACATCGA
TCATTTGACTTCGGAGGGGAGGCAGAAGCATGAGTACGATCACCTGGATG
GCACGGTGTACATCGATCATTTGACTTCGGAGGGGAGGCAGAAGGTGCAG
CCGGTATTAGACAAGCTCATCAGCGACTTCGGCGAGGGAGCGGCCTTGTG
AGTGCAGCCGGTATTAGACAAGCTCATCAGCGACTTCGGCGAGGGAGCGG
CCTTGTGA
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