mRNA_F-serratus_M_contig1531.3671.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1531.3671.1
Unique NamemRNA_F-serratus_M_contig1531.3671.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1531.3671.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1531contigF-serratus_M_contig1531:160071..160577 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size297
Cds size294
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929523.128501-CDS-F-serratus_M_contig1531:160070..1600961622929523.128501-CDS-F-serratus_M_contig1531:160070..160096Fucus serratus maleCDSF-serratus_M_contig1531 160071..160096 +
1690962891.1958063-CDS-F-serratus_M_contig1531:160070..1600961690962891.1958063-CDS-F-serratus_M_contig1531:160070..160096Fucus serratus maleCDSF-serratus_M_contig1531 160071..160096 +
1622929523.1468532-CDS-F-serratus_M_contig1531:160307..1605751622929523.1468532-CDS-F-serratus_M_contig1531:160307..160575Fucus serratus maleCDSF-serratus_M_contig1531 160308..160575 +
1690962891.2047935-CDS-F-serratus_M_contig1531:160307..1605751690962891.2047935-CDS-F-serratus_M_contig1531:160307..160575Fucus serratus maleCDSF-serratus_M_contig1531 160308..160575 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1531.3671.1prot_F-serratus_M_contig1531.3671.1Fucus serratus malepolypeptideF-serratus_M_contig1531 160071..160575 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1531.3671.1

>prot_F-serratus_M_contig1531.3671.1 ID=prot_F-serratus_M_contig1531.3671.1|Name=mRNA_F-serratus_M_contig1531.3671.1|organism=Fucus serratus male|type=polypeptide|length=98bp
FQTHCPCRSCVSKRSRIGTGRGMGGRGAGGVQGQGAGRGAVGRGQGAHTG
RRQPSLNGDSVYILTAGGKGTSVTLSVSTYGGNRVITSVNTTTLGSSC
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mRNA from alignment at F-serratus_M_contig1531:160071..160577+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1531.3671.1 ID=mRNA_F-serratus_M_contig1531.3671.1|Name=mRNA_F-serratus_M_contig1531.3671.1|organism=Fucus serratus male|type=mRNA|length=507bp|location=Sequence derived from alignment at F-serratus_M_contig1531:160071..160577+ (Fucus serratus male)
TTCCAAACGCACTGCCCCTGTCGCAGGTGAGAGTGTGCTGCAAAAAGTAC
GAAAACAATAAATCGGGGATGTATGTCGTTCATGGTCTAGTGCAACCTTT
CGTTTTGATGCCTGGTGGAAACTGAAAATGTGAATCATAACCAATCGGTA
TTCTTAATGGCCCGGCTAAATTTTGTATGGTTTATACCGAAGCATCGCAC
AACCCTTGCTTTTGCCTTCGCCCTTTGTACCTCCCAGCTGCGTCAGCAAG
CGTAGTCGCATAGGTACAGGGCGTGGAATGGGAGGCCGAGGGGCAGGAGG
AGTGCAGGGACAAGGGGCGGGACGAGGAGCTGTCGGCCGTGGTCAGGGGG
CTCACACTGGAAGAAGGCAGCCCTCGTTGAACGGGGATTCTGTCTACATC
TTGACGGCAGGTGGTAAAGGTACAAGCGTCACCCTCTCAGTGAGCACGTA
CGGCGGAAACAGAGTGATAACTTCGGTGAACACGACGACGTTGGGTAGCA
GCTGCTC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1531:160071..160577+

>mRNA_F-serratus_M_contig1531.3671.1 ID=mRNA_F-serratus_M_contig1531.3671.1|Name=mRNA_F-serratus_M_contig1531.3671.1|organism=Fucus serratus male|type=CDS|length=588bp|location=Sequence derived from alignment at F-serratus_M_contig1531:160071..160577+ (Fucus serratus male)
TTCCAAACGCACTGCCCCTGTCGCAGTTCCAAACGCACTGCCCCTGTCGC
AGCTGCGTCAGCAAGCGTAGTCGCATAGGTACAGGGCGTGGAATGGGAGG
CCGAGGGGCAGGAGGAGTGCAGGGACAAGGGGCGGGACGAGGAGCTGTCG
GCCGTGGTCAGGGGGCTCACACTGGAAGAAGGCAGCCCTCGTTGAACGGG
GATTCTGTCTACATCTTGACGGCAGGTGGTAAAGGTACAAGCGTCACCCT
CTCAGTGAGCACGTACGGCGGAAACAGAGTGATAACTTCGGTGAACACGA
CGACGTTGGGTAGCAGCTGCCTGCGTCAGCAAGCGTAGTCGCATAGGTAC
AGGGCGTGGAATGGGAGGCCGAGGGGCAGGAGGAGTGCAGGGACAAGGGG
CGGGACGAGGAGCTGTCGGCCGTGGTCAGGGGGCTCACACTGGAAGAAGG
CAGCCCTCGTTGAACGGGGATTCTGTCTACATCTTGACGGCAGGTGGTAA
AGGTACAAGCGTCACCCTCTCAGTGAGCACGTACGGCGGAAACAGAGTGA
TAACTTCGGTGAACACGACGACGTTGGGTAGCAGCTGC
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