mRNA_F-serratus_M_contig1531.3670.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1531.3670.1
Unique NamemRNA_F-serratus_M_contig1531.3670.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1531.3670.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1531contigF-serratus_M_contig1531:159977..160194 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size179
Cds size108
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1531.3670.1prot_F-serratus_M_contig1531.3670.1Fucus serratus malepolypeptideF-serratus_M_contig1531 160014..160160 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929523.0109508-UTR-F-serratus_M_contig1531:159976..1600131622929523.0109508-UTR-F-serratus_M_contig1531:159976..160013Fucus serratus maleUTRF-serratus_M_contig1531 159977..160013 +
1690962891.1443963-UTR-F-serratus_M_contig1531:159976..1600131690962891.1443963-UTR-F-serratus_M_contig1531:159976..160013Fucus serratus maleUTRF-serratus_M_contig1531 159977..160013 +
1622929523.0742266-UTR-F-serratus_M_contig1531:160160..1601941622929523.0742266-UTR-F-serratus_M_contig1531:160160..160194Fucus serratus maleUTRF-serratus_M_contig1531 160161..160194 +
1690962891.187668-UTR-F-serratus_M_contig1531:160160..1601941690962891.187668-UTR-F-serratus_M_contig1531:160160..160194Fucus serratus maleUTRF-serratus_M_contig1531 160161..160194 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929523.0307648-CDS-F-serratus_M_contig1531:160013..1600781622929523.0307648-CDS-F-serratus_M_contig1531:160013..160078Fucus serratus maleCDSF-serratus_M_contig1531 160014..160078 +
1690962891.1670525-CDS-F-serratus_M_contig1531:160013..1600781690962891.1670525-CDS-F-serratus_M_contig1531:160013..160078Fucus serratus maleCDSF-serratus_M_contig1531 160014..160078 +
1622929523.0524743-CDS-F-serratus_M_contig1531:160117..1601601622929523.0524743-CDS-F-serratus_M_contig1531:160117..160160Fucus serratus maleCDSF-serratus_M_contig1531 160118..160160 +
1690962891.1794822-CDS-F-serratus_M_contig1531:160117..1601601690962891.1794822-CDS-F-serratus_M_contig1531:160117..160160Fucus serratus maleCDSF-serratus_M_contig1531 160118..160160 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1531.3670.1

>prot_F-serratus_M_contig1531.3670.1 ID=prot_F-serratus_M_contig1531.3670.1|Name=mRNA_F-serratus_M_contig1531.3670.1|organism=Fucus serratus male|type=polypeptide|length=36bp
MFSMGRKTTASKCCVHNKPFQTTKTINRGCMSFMV*
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mRNA from alignment at F-serratus_M_contig1531:159977..160194+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1531.3670.1 ID=mRNA_F-serratus_M_contig1531.3670.1|Name=mRNA_F-serratus_M_contig1531.3670.1|organism=Fucus serratus male|type=mRNA|length=218bp|location=Sequence derived from alignment at F-serratus_M_contig1531:159977..160194+ (Fucus serratus male)
GATTCAAGCGTTCGCCCAAAAGTTTGAGGAATACAAAATGTTCAGCATGG
GCCGCAAAACCACCGCCTCAAAGTGCTGCGTTCACAACAAGCCGTTCCAA
ACGCACTGCCCCTGTCGCAGGTGAGAGTGTGCTGCAAAAAGTACGAAAAC
AATAAATCGGGGATGTATGTCGTTCATGGTCTAGTGCAACCTTTCGTTTT
GATGCCTGGTGGAAACTG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1531:159977..160194+

>mRNA_F-serratus_M_contig1531.3670.1 ID=mRNA_F-serratus_M_contig1531.3670.1|Name=mRNA_F-serratus_M_contig1531.3670.1|organism=Fucus serratus male|type=CDS|length=216bp|location=Sequence derived from alignment at F-serratus_M_contig1531:159977..160194+ (Fucus serratus male)
ATGTTCAGCATGGGCCGCAAAACCACCGCCTCAAAGTGCTGCGTTCACAA
CAAGCCGTTCCAAACATGTTCAGCATGGGCCGCAAAACCACCGCCTCAAA
GTGCTGCGTTCACAACAAGCCGTTCCAAACTACGAAAACAATAAATCGGG
GATGTATGTCGTTCATGGTCTAGTACGAAAACAATAAATCGGGGATGTAT
GTCGTTCATGGTCTAG
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