mRNA_F-serratus_M_contig1531.3669.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1531.3669.1 vs. uniprot
Match: D7FP67_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP67_ECTSI) HSP 1 Score: 115 bits (287), Expect = 1.530e-25 Identity = 76/160 (47.50%), Postives = 87/160 (54.37%), Query Frame = 1
Query: 337 MRDRERGRDSHLHREFVEI-----FP-------SCPEER--GVAGGVLGTDEEA-------SFCGRDRLWVNVVDGFVTTEAPGSFRAVRGGMLCDEPGLGKTITVLALLLRTRGLLPGPMAF-LDASETATEGGNLRSGSGKSTLETSEQWRHWGNMER 750
MR RERGR + H EFV + P S PE GVA G G ++ A S RLW+NVVDG V AP VRGGMLCDEPGLGKTITVLALLLRTRGLLPG + L S + GG + EQWR+WG++ER
Sbjct: 1 MRHRERGRAARPHPEFVPVDIAAVLPAGGRENSSVPEGSNIGVASGGGGWEKGARPDVSLPSPTASGRLWINVVDGMVWPSAPAPCSEVRGGMLCDEPGLGKTITVLALLLRTRGLLPGAVPLPLGVSSSTRSGG----------VSAEEQWRNWGSLER 150
BLAST of mRNA_F-serratus_M_contig1531.3669.1 vs. uniprot
Match: A0A6H5JR30_9PHAE (Bromo domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR30_9PHAE) HSP 1 Score: 105 bits (262), Expect = 1.500e-22 Identity = 74/175 (42.29%), Postives = 90/175 (51.43%), Query Frame = 1
Query: 337 MRDRERGRDSHLHREFVEI-----FP-------SCPE--ERGVAGGVLGTDEEA-------SFCGRDRLWVNVVDGFVTTEAPGSFRAVRGGMLCDEPGLGKTITVLALLLRTRGLLPGPMAFLDASETATEG----------------GNLRSGSGKSTLETSEQWRHWGNMER 750
MR RERGR + H EFV + P S PE + GVA G ++ A S RLW+NVVDG V AP VRGGMLCDEPGLGKTITVLALLLRTRG+LPG + ++ + G + RSG + EQWR+WG++ER
Sbjct: 1 MRHRERGRAARPHPEFVPVDIAAVLPAGCRENSSIPEGSKIGVASGGEDWEKGARPDVSLPSPTAGGRLWINVVDGMVWPSAPAPCSEVRGGMLCDEPGLGKTITVLALLLRTRGMLPGGTVGGNVTKASVFGMACFCGGTVPRPLGVSSSTRSGG----VSAEEQWRNWGSLER 171
BLAST of mRNA_F-serratus_M_contig1531.3669.1 vs. uniprot
Match: A0A1Z9KH43_9BACT (RING-type domain-containing protein (Fragment) n=1 Tax=bacterium TMED181 TaxID=1986654 RepID=A0A1Z9KH43_9BACT) HSP 1 Score: 106 bits (264), Expect = 2.100e-22 Identity = 63/152 (41.45%), Postives = 77/152 (50.66%), Query Frame = 1
Query: 178 LPTAVVMKVAYYLPSSGLDALSGTSKDHHQTCSSLVPGLKLDLFPHQAEGLRWMRDRERGRDSHLHREFVEIFPSCPEERGVAGGVLGTDEEASFCGRDRLWVNVVDGFVTTEAPGSFRAVRGGMLCDEPGLGKTITVLALLLRTRGLLPGP 633
LP + V +L G AL+ T + PGLKL L PHQ GL WMR RER S ++ P + GTDE S DR WVN + G ++T PG + V GG+LCDEPGLGKT+T LAL+L RG P P
Sbjct: 246 LPEMAMDAVLSFLDPRGCAALASTCVGARVRLDCVAPGLKLRLHPHQEAGLAWMRGRERPAGSISMPPLLDPAWIGPMRTQP---IDGTDESMSQGSDDRYWVNTLTGEMSTNQPGFYADVPGGLLCDEPGLGKTVTALALVLARRGARPAP 394
BLAST of mRNA_F-serratus_M_contig1531.3669.1 vs. uniprot
Match: A0A5B8MTJ4_9CHLO (Uncharacterized protein n=3 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MTJ4_9CHLO) HSP 1 Score: 105 bits (262), Expect = 3.970e-22 Identity = 70/196 (35.71%), Postives = 105/196 (53.57%), Query Frame = 1
Query: 49 LLEEVFTSLKPREDGLGMAGKDQGLSRIRSGLGPCPGAQ-GLSALPTAVVMKVAYYLPSSGLDALSGTSKDHHQTCSSLVPGLKLDLFPHQAEGLRWMRDRERGRDSHLHREFVEIFPSCPEERGVAGGVLGTDEEASFCGRDRLWVNVVDGFVTTEAPGSFRAVRGGMLCDEPGLGKTITVLALLLRTRGLLPGP 633
+L +VFT+L +D + K+ L + +S + P GA+ GL LP++ + ++ L S+ + L+ T + H C VPG+KL+L+ HQ L WM RE + + V + P E T + SF WV+ V+ VT EAP + RGG LCDEPG+GKT+TV++L+LRT+ LP P
Sbjct: 209 ILSKVFTNLPRHKD---LVSKNFYLGQ-QSNVLPARGAEPGLWMLPSSALQRIVQSLDSASMGNLAATCRHLHSLCCIQVPGMKLNLYQHQKTALFWMLGREGNQQN------VSLRPGALE--------CVTGDGFSF------WVDTVNKMVTFEAPDTHLDCRGGFLCDEPGMGKTVTVISLVLRTKSRLPKP 380
BLAST of mRNA_F-serratus_M_contig1531.3669.1 vs. uniprot
Match: A0A7S0NJG6_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0NJG6_MICPS) HSP 1 Score: 100 bits (248), Expect = 2.750e-20 Identity = 64/162 (39.51%), Postives = 77/162 (47.53%), Query Frame = 1
Query: 178 LPTAVVMKVAYYLPSSGLDALSGTSKDHHQTCSSLVPGLKLDLFPHQAEGLRWMRDRERGRDSHLHREF----------VEIFPSCPEERGVAGGVLGTDEEASFCGRDRLWVNVVDGFVTTEAPGSFRAVRGGMLCDEPGLGKTITVLALLLRTRGLLPGP 633
LP + +V L G A + T Q PGLKL L PHQ GL WMR RER S +E P + G V + EAS DR WVNV+ G ++T P + GG+LCDEPGLGKT+T LAL+L TRG P P
Sbjct: 7 LPEMALDEVLSRLDPRGCAAFASTCAGARQRIERRAPGLKLRLHPHQEAGLAWMRARERPSGSASMPPLPDPRWIGPMRIEPTPHHRADGGERRSVSPNNVEAS----DRYWVNVLTGEMSTSPPPHYADSPGGLLCDEPGLGKTVTALALVLATRGARPAP 164
BLAST of mRNA_F-serratus_M_contig1531.3669.1 vs. uniprot
Match: A0A388K795_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388K795_CHABU) HSP 1 Score: 99.8 bits (247), Expect = 3.800e-20 Identity = 55/156 (35.26%), Postives = 82/156 (52.56%), Query Frame = 1
Query: 166 GLSALPTAVVMKVAYYLPSSGLDALSGTSKDHHQTCSSLVPGLKLDLFPHQAEGLRWMRDRERGRDSHLHREFVEIFPSCPEERGVAGGVLGTDEEASFCGRDRLWVNVVDGFVTTEAPGSFRAVRGGMLCDEPGLGKTITVLALLLRTRGLLPGP 633
G+ ++P +++ + L ++ L ++ + + + L PGLKLDLFPHQ +RWM RER + + H P C E + G R +NVV G ++EAP S RGG+ CDEPGLGKT+T L+L+L+T+G P
Sbjct: 217 GIWSIPDEILVSILARLSAADLRSVEAVCRHTRELAAGLAPGLKLDLFPHQRTAVRWMLQRERKVNCYPH-------PLCMELQSEDG--------------KRYNINVVSGAFSSEAPSSICDFRGGLFCDEPGLGKTVTALSLVLKTQGTFATP 351
BLAST of mRNA_F-serratus_M_contig1531.3669.1 vs. uniprot
Match: A0A2P6VCA5_9CHLO (F-box protein isoform X1 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VCA5_9CHLO) HSP 1 Score: 99.4 bits (246), Expect = 5.250e-20 Identity = 65/165 (39.39%), Postives = 82/165 (49.70%), Query Frame = 1
Query: 148 PCPGAQGLSALPTAVVMKVAYYLPSSGLDALSGTSKDHHQTCSSLVPGLKLDLFPHQAEGLRWMRDRERGRDSHLHREFVEIFPSCPEERGVAGGVLGTDEEASFCGRDR-----LWVNVVDGFVTTEAPGSFRAVRGGMLCDEPGLGKTITVLALLLRTRGLLP 627
PCP LS LPT V+++V L L A + + ++ + PGL+L LFPHQ + WM+ RER L V F C E AGG A F G W + G + E P ++GG+ CDEPGLGKTIT LALLLRT G+LP
Sbjct: 9 PCP----LSQLPTDVLLRVLCQLDKRSLGAAAAGCRHLYELTRDVAPGLQLQLFPHQRAAVLWMQARERA-GGVLPHPTVAAF-QCAEVDAGAGGA------ACFAGTPLPRGLPCWGDTATGELRMEPPDVMPDLQGGLFCDEPGLGKTITALALLLRTIGVLP 161
BLAST of mRNA_F-serratus_M_contig1531.3669.1 vs. uniprot
Match: A0A2P6TEP6_CHLSO (F-box protein n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TEP6_CHLSO) HSP 1 Score: 99.0 bits (245), Expect = 6.980e-20 Identity = 65/175 (37.14%), Postives = 87/175 (49.71%), Query Frame = 1
Query: 148 PCPGAQGLSALPTAVVMKVAYYLPSSGLDALSGTSKDHHQTCSSLVPGLKLDLFPHQAEGLRWMRDRERGRDSHLHREFV--EIFPSCPEERGVAGGVLGTDEEASFCGRDR-----LWVNVVDGFVTTEAPGSFRAVRGGMLCDEPGLGKTITVLALLLRTRGLLPGPMAFLDA 651
PCP AQ L +++ V L L A + + + + + PGLKL LFPHQ + WM+ RE+ + + E P P + + L D A+ G+ LW++ G TEAP R VRGG+ DEPGLGKTIT LAL+LRT G LP A L+A
Sbjct: 233 PCPLAQ----LDQPLLLSVLSRLDRRALVAAAASCRHLRELTRDVAPGLKLSLFPHQRIAVMWMQGREQPSSAPAQQPVGGGEAAPH-PFIQPICCSELEADSAAAAFGQPAGPGLPLWLDTASGEALTEAPPELRGVRGGLFADEPGLGKTITALALILRTLGTLPAAPAGLEA 402
BLAST of mRNA_F-serratus_M_contig1531.3669.1 vs. uniprot
Match: A0A7S0KE34_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0KE34_MICPS) HSP 1 Score: 97.8 bits (242), Expect = 1.370e-19 Identity = 57/139 (41.01%), Postives = 70/139 (50.36%), Query Frame = 1
Query: 226 GLDALSGTSKDHHQTCSSLVPGLKLDLFPHQAEGLRWMRDRERGRDSHLHREFVEIFPSCPEERGVAGGVLGTDEEA---SFCGRDRLWVNVVDGFVTTEAPGSFRAVRGGMLCDEPGLGKTITVLALLLRTRGLLPGP 633
G A + T Q PGLKL L PHQ GL WMR RER S P P+ R + + + + S DR WVNV+ G ++T P + GG+LCDEPGLGKT+T LAL+L TRG P P
Sbjct: 14 GCAAFASTCVGARQRVDCRAPGLKLRLHPHQEAGLAWMRARERPNGS-------ASMPPLPDPRWIGPMRIEPEPDQPSPSGTPSDRYWVNVLTGEMSTSPPPHYADSPGGLLCDEPGLGKTVTALALVLATRGARPAP 145
BLAST of mRNA_F-serratus_M_contig1531.3669.1 vs. uniprot
Match: A0A151RNK3_CAJCA (F-box protein At3g54460 family n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151RNK3_CAJCA) HSP 1 Score: 95.5 bits (236), Expect = 1.070e-18 Identity = 61/160 (38.12%), Postives = 83/160 (51.88%), Query Frame = 1
Query: 157 GAQGLSALPTAVVMKVAYYLPSSGLDALSGTSKDHHQTCSSLVPGLKLDLFPHQAEGLRWMRDRERGRDSHLHREFVEIFPSCPEERGVAGGVLGTDEEASFCGRDRLWVNVVDG-FVTTEAPGSFRAVRGGMLCDEPGLGKTITVLALLLRTRGLLPGP 633
G G+ ++P ++ K+ L L +S T + +S++P KL+LFPHQ + WM RERG + H FV L TD+ SF VN V G VT EAP + + RGGM CDEPGLGKT+T L+L+++TRG L P
Sbjct: 225 GELGIWSIPDDILTKILASLGPMDLTRVSATCRHLRSLAASVMPCTKLNLFPHQRTAVEWMLHRERGAELLPHPLFVP---------------LSTDDGFSF------HVNTVSGEIVTGEAP-TVKDFRGGMFCDEPGLGKTVTALSLIMKTRGSLADP 362 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1531.3669.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1531.3669.1 >prot_F-serratus_M_contig1531.3669.1 ID=prot_F-serratus_M_contig1531.3669.1|Name=mRNA_F-serratus_M_contig1531.3669.1|organism=Fucus serratus male|type=polypeptide|length=246bp MSSKDPQGLGLRLLEEVFTSLKPREDGLGMAGKDQGLSRIRSGLGPCPGAback to top mRNA from alignment at F-serratus_M_contig1531:129170..136527- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1531.3669.1 ID=mRNA_F-serratus_M_contig1531.3669.1|Name=mRNA_F-serratus_M_contig1531.3669.1|organism=Fucus serratus male|type=mRNA|length=7358bp|location=Sequence derived from alignment at F-serratus_M_contig1531:129170..136527- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1531:129170..136527- >mRNA_F-serratus_M_contig1531.3669.1 ID=mRNA_F-serratus_M_contig1531.3669.1|Name=mRNA_F-serratus_M_contig1531.3669.1|organism=Fucus serratus male|type=CDS|length=1476bp|location=Sequence derived from alignment at F-serratus_M_contig1531:129170..136527- (Fucus serratus male)back to top |