mRNA_F-serratus_M_contig1531.3668.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1531.3668.1
Unique NamemRNA_F-serratus_M_contig1531.3668.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1531.3668.1 vs. uniprot
Match: A0A6H5JR30_9PHAE (Bromo domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR30_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 4.240e-35
Identity = 69/101 (68.32%), Postives = 80/101 (79.21%), Query Frame = 1 
Query:   52 RARAIPAVAEAARRLGQGVEGLLEGVFVGRRVARGDVLAQRLRELKPSSASLIVVPPPMLPHWRNQLTLHAQPGRLGRLFFDERSDQPLPPAEELRGFGVV 354
            R RA+P VAEAA  L +  E LL+GVFV RR+ R + L +RLR LK SSA+LIVVPPPMLPHWRNQLTLHA+ GRLG +FFDERSD  LPP +EL+ FGVV
Sbjct:  313 RDRAMPKVAEAAEELSREAEDLLKGVFVARRIDRAEALVERLRSLKASSATLIVVPPPMLPHWRNQLTLHAEHGRLGPVFFDERSDTRLPPVDELKEFGVV 413
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BLAST of mRNA_F-serratus_M_contig1531.3668.1 vs. uniprot
Match: D7FP67_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP67_ECTSI)

HSP 1 Score: 130 bits (327), Expect = 6.960e-33
Identity = 68/101 (67.33%), Postives = 79/101 (78.22%), Query Frame = 1 
Query:   52 RARAIPAVAEAARRLGQGVEGLLEGVFVGRRVARGDVLAQRLRELKPSSASLIVVPPPMLPHWRNQLTLHAQPGRLGRLFFDERSDQPLPPAEELRGFGVV 354
            R RA+P VAEAA  L +  E LL+GVFV RR+ R + L +RL  LK SSA+LIVVPPPMLPHWRNQLTLHA+ GRLG +FFDERSD  LPP +EL+ FGVV
Sbjct:  274 RDRAMPKVAEAAEELSREAEDLLKGVFVARRIDRAESLLERLCALKASSATLIVVPPPMLPHWRNQLTLHAEHGRLGSVFFDERSDTRLPPVDELKDFGVV 374
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BLAST of mRNA_F-serratus_M_contig1531.3668.1 vs. uniprot
Match: A0A662XAN3_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XAN3_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 7.470e-5
Identity = 28/61 (45.90%), Postives = 37/61 (60.66%), Query Frame = 1 
Query:  172 RLRELKPSSASLIVVPPPMLPHWRNQLTLHAQPGRLGRLFFDERSDQPLPPAEELRGFGVV 354
            RL +L  S ASLIVVP P++ HW+ Q+  H +PG L R+F D   D  LP   +L  + VV
Sbjct:  384 RLEDLVSSGASLIVVPDPLVEHWKYQVETHVEPGAL-RVFVDPGMDYTLPCNLDLAEYDVV 443
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BLAST of mRNA_F-serratus_M_contig1531.3668.1 vs. uniprot
Match: A0A2D4BLP9_PYTIN (Uncharacterized protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BLP9_PYTIN)

HSP 1 Score: 50.8 bits (120), Expect = 7.590e-5
Identity = 25/59 (42.37%), Postives = 36/59 (61.02%), Query Frame = 1 
Query:  178 RELKPSSASLIVVPPPMLPHWRNQLTLHAQPGRLGRLFFDERSDQPLPPAEELRGFGVV 354
            ++L  S+ +LIVVP P++ HWR Q+ +H Q G L     D    +P+P AEEL  + VV
Sbjct: 1750 QKLLRSATTLIVVPNPLVEHWRYQIKMHVQRGMLTVYVDDAEGKRPMPSAEELASYDVV 1808
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1531.3668.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JR30_9PHAE4.240e-3568.32Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FP67_ECTSI6.960e-3367.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A662XAN3_9STRA7.470e-545.90Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A2D4BLP9_PYTIN7.590e-542.37Uncharacterized protein (Fragment) n=1 Tax=Pythium... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1531contigF-serratus_M_contig1531:124714..127413 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score134.0
Seed ortholog evalue4.4e-29
Seed eggNOG ortholog2880.D7FP67
KEGG koko:K15505
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005911,GO:0009506,GO:0030054,GO:0055044
EggNOG free text desc.helicase activity
EggNOG OGsCOG0553@1,KOG1001@2759
Ec32 ortholog descriptionBromodomain, Zn finger and SNF2-related helicase domain protein
Ec32 orthologEc-08_000660.1
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03400
Exons4
Model size357
Cds size354
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1531.3668.1prot_F-serratus_M_contig1531.3668.1Fucus serratus malepolypeptideF-serratus_M_contig1531 124715..127413 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929524.0434194-CDS-F-serratus_M_contig1531:124714..1247971622929524.0434194-CDS-F-serratus_M_contig1531:124714..124797Fucus serratus maleCDSF-serratus_M_contig1531 124715..124797 -
1690962891.6872141-CDS-F-serratus_M_contig1531:124714..1247971690962891.6872141-CDS-F-serratus_M_contig1531:124714..124797Fucus serratus maleCDSF-serratus_M_contig1531 124715..124797 -
1622929524.0644147-CDS-F-serratus_M_contig1531:125666..1257901622929524.0644147-CDS-F-serratus_M_contig1531:125666..125790Fucus serratus maleCDSF-serratus_M_contig1531 125667..125790 -
1690962891.7079887-CDS-F-serratus_M_contig1531:125666..1257901690962891.7079887-CDS-F-serratus_M_contig1531:125666..125790Fucus serratus maleCDSF-serratus_M_contig1531 125667..125790 -
1622929524.0825746-CDS-F-serratus_M_contig1531:126624..1267351622929524.0825746-CDS-F-serratus_M_contig1531:126624..126735Fucus serratus maleCDSF-serratus_M_contig1531 126625..126735 -
1690962891.7244267-CDS-F-serratus_M_contig1531:126624..1267351690962891.7244267-CDS-F-serratus_M_contig1531:126624..126735Fucus serratus maleCDSF-serratus_M_contig1531 126625..126735 -
1622929524.096693-CDS-F-serratus_M_contig1531:127377..1274131622929524.096693-CDS-F-serratus_M_contig1531:127377..127413Fucus serratus maleCDSF-serratus_M_contig1531 127378..127413 -
1690962891.733703-CDS-F-serratus_M_contig1531:127377..1274131690962891.733703-CDS-F-serratus_M_contig1531:127377..127413Fucus serratus maleCDSF-serratus_M_contig1531 127378..127413 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1531.3668.1

>prot_F-serratus_M_contig1531.3668.1 ID=prot_F-serratus_M_contig1531.3668.1|Name=mRNA_F-serratus_M_contig1531.3668.1|organism=Fucus serratus male|type=polypeptide|length=118bp
VSPAGGAGGDQQVLAKARARAIPAVAEAARRLGQGVEGLLEGVFVGRRVA
RGDVLAQRLRELKPSSASLIVVPPPMLPHWRNQLTLHAQPGRLGRLFFDE
RSDQPLPPAEELRGFGVV
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mRNA from alignment at F-serratus_M_contig1531:124714..127413-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1531.3668.1 ID=mRNA_F-serratus_M_contig1531.3668.1|Name=mRNA_F-serratus_M_contig1531.3668.1|organism=Fucus serratus male|type=mRNA|length=2700bp|location=Sequence derived from alignment at F-serratus_M_contig1531:124714..127413- (Fucus serratus male)
GTTTCTCCAGCGGGAGGTGCGGGCGGCGATCAACAGGTGTGCGCACGACA
ACGTTTGTCGTGATCTCGGTCGAAGCCTGGCTCCCTCACTCGTCGATCGC
TTCTATCGTGTTAAGGCGCGAGGAAGCCAATGCGTTGTTAAAAAATGGCC
ATTCTCCTGGAATCTTGAAACCGGCCTTCCCGAAATCTTTGTGACTTGAA
TTTGTGGGCGATGAAAACGCGTTCCCCCTAGGATGGAACATGTGGAACAA
AGAACACGCGTCAATACTATTAATAATAATAGGTGTTAGGGAGAATTCGA
CTTTTTAAAAAGCAACGTTTGAAGCATGCCATATACATATACACTGCTGT
AGTTGATATTAGCTGTAGGTGACGCCGCAAGCGACGTAGTGGTGCAAATC
GATTTGATAAGTATATGTAGCTTTGCTGCTGCGTTCTGTGTGGCGTTTAT
GTTGTCGATGCACTTCTCACATTGCCAGTTACCCGAAATACGGTACTCGA
CCCGCGGCCCACGTACACTATGTTTTTCCCTCTTTTTCTCCCCTTTTTTT
TATCCAACATAATTTTTAGGGTTTTTTTTCTTACCGCGAGTGAAAAGGGG
TGGCGACATGCAAAATCGAACCGCCCAAATGCGTGCATCTTTCCATGTGT
TTTTTTGTTTCCTGTCGCATTGAGACAGGTTTTGGCGAAGGCTCGAGCTA
GAGCTATCCCGGCCGTTGCTGAAGCGGCTCGGAGGCTCGGGCAAGGGGTT
GAGGGCCTTCTCGAGGGAGTGTTCGTCGGCAGAAGAGTGGTGAGGCATTC
AAACTTTAAAAAAATCGGCCTTGAAGTTCAAGTCCCATTTCGTTGTCAAA
TTTTTCCTTCACGATCAAATTTGAACTTGATCGTTATCAAATTTCGAATT
TGAAATTTTTGAATTTGAAAATTTCGAATTCAAAATGGTAGCCAGATTCA
AGTTTGAAGATAGCTACTACTGTAAGTTAGAAGCGCTAAACCACTAGACT
ACTGAGTCATGACTGAGTAGTCTAGTGGTTTATCGCTTCTAACTTTCAAA
AGATTTGCGCGGAACAACAGCGATCTCCGGGGACCTGCAGTATCTACAAT
GGCCGCAACTAACTTTTTCGTCGTTACCGGGGATTGAACCGCGAAAATCC
TTTGTAAGTTAGAAGCGCTAAACCACTGGACTACTGAGTCATGACTCAGT
AGTCTAGTGCAGCCATTGTAGATACTGCAGTGCGTGGCAAGGGGAGGTCC
CCGGAGATCACTCTTGTTCCGCGCAAATATTTTGTAAGTTAGAAGCGATA
AACCACTAGACTATTGAGTCAAGACTCAGCAGTCTAGTGGTTTAGCGCTT
CTAACTTACAGCTACAACCCGATAGTCTAGGTAATTAGCGTGCATATTTT
CGCGGTAAAAGCCTGAAAATCCACTCTTACTTCAAATCAGAACCTTAGCT
AGTGGTTAGTGGTTGGAAATAAAATGGACCATGCGTTACGGTCGCTTGCT
ATTAGTTCCCGCTCATCCACTTCCAGTCTCTTCAAATTTCAAAACATATG
TTGGAAGGAGAGAGAGTATTAGTTTACCCCCGCGCCCGCTTTCCGATACC
GCCGCGTGATGACGTAATGGAAGGCCCGAGGTGATGTCCTGGCGCAACGC
CTCCGAGAGCTGAAACCCTCCTCGGCGTCTCTCATCGTAGTCCCGCCGCC
CATGCTACCGCACTGGCGGAACCAGCTCACCCTGCACGCGCAACCAGGTG
ATTTCCGCCTCCTTATTGTATAACTCCCTTCCTTGCCCTTTGCCCGGGAG
GCGCGGCGATCGGCGATTCTCGTTAATGTGTATTATAATACTTGTCGCCC
GACCACTGTACTGGTAATAAGTAATCGATAAAGATAACCTCGTAGTCCAT
CAGTGCAGAGTTTGCGAGTTGGATCCTCGGTGCATACCAGGATGGAGGGG
GGGGGGGTATTTTGGTTTCTGTCGTACGAACGTGAGTGAGCTAAAAGTTG
AGCCTTAGGCTAACGAGGTAGAAGAGAGCAGCTGCAATTGCATGGTGCAC
CGTGTTCCTGAACCGTGAGGGAATGGGCCACGTTGCAGTAGTAGCTGATT
GGTTGATTGATCACCCCGCGTGCTTTGACTGGACCGCGTGAAAAACAAGC
CTATAACAATATAATAGTATACTGGATGCATATCTATCACCGCGCTGTGA
ACTGCTCCAACGCCGATACTTGTAGCATGTTGGTTATATTGATTTAACGA
AGTAAGCCGGAAGGCCAAAAACCCAAAGAGGAGTCTTTCTAGAATCTATG
ATCAGCATCATCAGAATGTACGAACTCCTACAGGTAATATGACTATTTCT
TACACCCTCCAATAATATCGATACATCGAATAGGTTATAGATTTGGGGGC
AAGGCACCATGGAGTCCGAGCGCCGCTCTCCCGTGCTCCCCCCCCCCCGT
GAAGGAGTCAACCCTGCTTCGTAGATCGTCTTGCTTTGCTTTTCCGGGCA
TCAGAAGGCCAGATGAGAGATCAGGCCAGATGCATCATGTTGCGACCCAA
ATCAGGCAACTTGGAGCTAAATACCCCTCTCATGGACTATTAATACTGTT
TGAATTCAATTAAAAGGTAGGCTGGGGCGCCTATTCTTTGACGAGCGGTC
TGATCAGCCCCTGCCGCCAGCGGAAGAGCTGCGAGGGTTCGGGGTCGTGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1531:124714..127413-

>mRNA_F-serratus_M_contig1531.3668.1 ID=mRNA_F-serratus_M_contig1531.3668.1|Name=mRNA_F-serratus_M_contig1531.3668.1|organism=Fucus serratus male|type=CDS|length=708bp|location=Sequence derived from alignment at F-serratus_M_contig1531:124714..127413- (Fucus serratus male)
GTTTCTCCAGCGGGAGGTGCGGGCGGCGATCAACAGGTTTCTCCAGCGGG
AGGTGCGGGCGGCGATCAACAGGTTTTGGCGAAGGCTCGAGCTAGAGCTA
TCCCGGCCGTTGCTGAAGCGGCTCGGAGGCTCGGGCAAGGGGTTGAGGGC
CTTCTCGAGGGAGTGTTCGTCGGCAGAAGAGTGGTTTTGGCGAAGGCTCG
AGCTAGAGCTATCCCGGCCGTTGCTGAAGCGGCTCGGAGGCTCGGGCAAG
GGGTTGAGGGCCTTCTCGAGGGAGTGTTCGTCGGCAGAAGAGTGGCCCGA
GGTGATGTCCTGGCGCAACGCCTCCGAGAGCTGAAACCCTCCTCGGCGTC
TCTCATCGTAGTCCCGCCGCCCATGCTACCGCACTGGCGGAACCAGCTCA
CCCTGCACGCGCAACCAGGCCCGAGGTGATGTCCTGGCGCAACGCCTCCG
AGAGCTGAAACCCTCCTCGGCGTCTCTCATCGTAGTCCCGCCGCCCATGC
TACCGCACTGGCGGAACCAGCTCACCCTGCACGCGCAACCAGGTAGGCTG
GGGCGCCTATTCTTTGACGAGCGGTCTGATCAGCCCCTGCCGCCAGCGGA
AGAGCTGCGAGGGTTCGGGGTCGTGGTAGGCTGGGGCGCCTATTCTTTGA
CGAGCGGTCTGATCAGCCCCTGCCGCCAGCGGAAGAGCTGCGAGGGTTCG
GGGTCGTG
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