mRNA_F-serratus_M_contig153.3642.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig153.3642.1
Unique NamemRNA_F-serratus_M_contig153.3642.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig153.3642.1 vs. uniprot
Match: A0A6H5L2C4_9PHAE (Cystatin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2C4_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 4.130e-28
Identity = 53/94 (56.38%), Postives = 72/94 (76.60%), Query Frame = 2 
Query:  518 RGPLVEGPVAGGTTDITGSNDKHLAEVSQFASDHLAGENSGLHYVQMSAKVQVVAGLIYTLRYNGNDDDGVCQEERVIVVHDKPWANERVIKND 799
            RGP+   P+ G   D+TGSNDKHL+EV++FA+ +L  +NS L Y+Q+ A+VQVVAG++YTL Y GND  G C EER +VV+DKPW +ER +K+D
Sbjct:   61 RGPVASAPLVGAKQDVTGSNDKHLSEVTEFAAKYLTEQNSELTYIQVKAEVQVVAGMMYTLHYRGNDAAGECLEERTLVVYDKPWLDERTLKSD 154
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig153.3642.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L2C4_9PHAE4.130e-2856.38Cystatin domain-containing protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig153contigF-serratus_M_contig153:268270..271486 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size1884
Cds size462
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig153.3642.1prot_F-serratus_M_contig153.3642.1Fucus serratus malepolypeptideF-serratus_M_contig153 269334..271128 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929518.864845-UTR-F-serratus_M_contig153:268269..2693331622929518.864845-UTR-F-serratus_M_contig153:268269..269333Fucus serratus maleUTRF-serratus_M_contig153 268270..269333 -
1690962889.3673177-UTR-F-serratus_M_contig153:268269..2693331690962889.3673177-UTR-F-serratus_M_contig153:268269..269333Fucus serratus maleUTRF-serratus_M_contig153 268270..269333 -
1622929518.9217188-UTR-F-serratus_M_contig153:271128..2714861622929518.9217188-UTR-F-serratus_M_contig153:271128..271486Fucus serratus maleUTRF-serratus_M_contig153 271129..271486 -
1690962889.4035914-UTR-F-serratus_M_contig153:271128..2714861690962889.4035914-UTR-F-serratus_M_contig153:271128..271486Fucus serratus maleUTRF-serratus_M_contig153 271129..271486 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929518.8764098-CDS-F-serratus_M_contig153:269333..2694171622929518.8764098-CDS-F-serratus_M_contig153:269333..269417Fucus serratus maleCDSF-serratus_M_contig153 269334..269417 -
1690962889.3759263-CDS-F-serratus_M_contig153:269333..2694171690962889.3759263-CDS-F-serratus_M_contig153:269333..269417Fucus serratus maleCDSF-serratus_M_contig153 269334..269417 -
1622929518.8880205-CDS-F-serratus_M_contig153:269819..2699511622929518.8880205-CDS-F-serratus_M_contig153:269819..269951Fucus serratus maleCDSF-serratus_M_contig153 269820..269951 -
1690962889.3856254-CDS-F-serratus_M_contig153:269819..2699511690962889.3856254-CDS-F-serratus_M_contig153:269819..269951Fucus serratus maleCDSF-serratus_M_contig153 269820..269951 -
1622929518.9072654-CDS-F-serratus_M_contig153:270882..2711281622929518.9072654-CDS-F-serratus_M_contig153:270882..271128Fucus serratus maleCDSF-serratus_M_contig153 270883..271128 -
1690962889.3946712-CDS-F-serratus_M_contig153:270882..2711281690962889.3946712-CDS-F-serratus_M_contig153:270882..271128Fucus serratus maleCDSF-serratus_M_contig153 270883..271128 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig153.3642.1

>prot_F-serratus_M_contig153.3642.1 ID=prot_F-serratus_M_contig153.3642.1|Name=mRNA_F-serratus_M_contig153.3642.1|organism=Fucus serratus male|type=polypeptide|length=154bp
MRAALLLLVLLLSVSATAMAEPKEKMPEEKKLEEDNETAGRLTPTKITEK
GWQRGPLVEGPVAGGTTDITGSNDKHLAEVSQFASDHLAGENSGLHYVQM
SAKVQVVAGLIYTLRYNGNDDDGVCQEERVIVVHDKPWANERVIKNDYKA
IRT*
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mRNA from alignment at F-serratus_M_contig153:268270..271486-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig153.3642.1 ID=mRNA_F-serratus_M_contig153.3642.1|Name=mRNA_F-serratus_M_contig153.3642.1|organism=Fucus serratus male|type=mRNA|length=3217bp|location=Sequence derived from alignment at F-serratus_M_contig153:268270..271486- (Fucus serratus male)
CCGGCTGGTACATCCAACGAACTTGACGTCCAAAATAAATGGGAAGAAAA
CACATCAAAAACGCACAATTTAATACCGGTACTTTCTTCACTTTTGATAA
GACGTCCTCTACGCACGACCAACATTTCTCTTTTTGTTGTTTGTTTCTCA
TTACTTCTATCGCTGAATGCTACCCGTCTGTCTTGAACCATGAGTACTGG
TGTACCTCATAGTTCCTACATAAATATCCCCTGTGCGCCGTTGCGACGTC
AAAATTGGGCAGCTTTCCAACGGCTTGTATGTCTGCTTTTGGTGCTCGTT
CGTTTCCTCCTCTAGAAGCAGAGTTGCTTGCTACCTTGCCTCGCTGGATT
GAAGTGGAATGAGAGCTGCTCTTTTGCTCTTGGTGCTGCTACTGTCTGTC
TCGGCCACAGCGATGGCCGAGCCCAAGGAAAAGATGCCCGAAGAAAAGAA
GCTAGAGGAAGACAATGAGACGGCCGGTCGATTGACCCCCACGAAAATAA
CCGAGAAAGGGTGGCAGAGAGGTCCGCTCGTGGAAGGCCCTGTGGCCGGA
GGGACAACCGATATTACTGGATCCAACGACAAACACCTTGCCGAAGTCAG
TCAGGTGGGAAAATGTTAAATGAAGTACAGTACAACTAATAGAGACTGCA
GCGAGTTGAAGGAAGTACGAATTACTTCGTACGAAGGAAGATCGACGAGC
CATTTCTCTCCTATAACTCCCGTCGTAACGGCAAGACCGTTGCGTATAAA
TGATGTTTCAGACTTCGTTGATTTCAGGCATTTAGTGCAGTCTGCTCAAA
CACCCTTCGAAGCCCTCCGAGCATCGACATCTTCTTGACACGAATCGCGG
CGACGATCAAGGGGGCTTTGTGCCGATCAATTGAAATTGGGCGTTGCGTT
CGGAAACCCGCGGCGGCTTGCGATTTTCTTTCTGGGATATATCCTGCTCG
ATGTAGTATCTCTTTGCCTATTAGAGATAAGGCTATCAGATCGTAGAGTA
TTGCAAAATCAGGACGAGGTCTGTACCCATCACCAAGGCGACTCCAAAAC
CTCCACCCCCGCGCGGCAATGGTGAGCGCGTCCTATGCTGGATGATATCT
TCTTGTCGAGCACCAAGCGAGGAGCGTGTGCGTTTTCAGCTCCTTCCAAA
GAAGTGTAAAGGCGGTACAGATAACACCGAGAAGCACGACGTCTCGAATC
GCCTGCTACTAATGATACTTGTTCACGTTCGAAAATTCAGTGTAATTCAA
AGAAAATCTGAACGCATCTAAATCTTCTAATCTAATCAGTCAAAAGGTTT
AGGTGGGAATATTGGCTGTAGGGACAAAAACCTCTACATGTTATTAAAAG
GGTTCCCCAATGTAGTTACATAGGGTCAACAGTATAATATTGGAGAGAAC
CCCACCGTTACACTGTACACTAACATTAATCGCCATGTAGGGACACCAAG
TGTAATGTTTCTTGTAGCTGGGGCGCGTTCATATTCCCCCCGCGCTATAC
CCCCCCCCCCCATCCCCCCCGCCTTCTCCTCGTAGTTCGCTTCCGACCAT
CTGGCGGGGGAGAATTCGGGACTACACTACGTGCAGATGAGCGCGAAAGT
TCAGGTGGTTGCCGGGCTCATCTACACGTTGCGCTACAATGGGAACGACG
ACGACGGCGTGTGTCAGGTCAGCCACCGTCGAAAATCAATGTACCAGGAG
ATCGTGAAAAGCAACACTTTGCGCCCTTGCTTTGCTCCAGGACGTCGCGC
TACGGTTCACCTTATTTTCCGGGCTGGCGTGTTGAGTGGCTTGCGTCCTG
ATGTGCACCCTTGTGGTTAGATAATTGTTGTGGCGTCGCTGAAGAACCCT
TGTAAAAAATGGCATCCAAGTCAATTGACGCTTGCCCTACTCCGTTGGTC
TTTTCTTTTTCCTACGCCTCGATTTCTCGCCGTTGGATACCCTCAATTCT
AGAGCTATGGCGTAACCTCAGTGTGACCAGATTATCGATCCCCGACTTCC
ACGTGCTGACCCAAATACTTTGTATTCGCGCACGCGTTTACTACCTTACC
TTTTTCTGTTTGTATGCAGGAGGAGCGTGTGATTGTTGTACACGACAAGC
CATGGGCAAATGAACGTGTCATCAAGAACGATTATAAGGCGATACGTACG
TGAAAGCTTCTTGCCCTAAGAGACACTGTAGCAAGTCAGTCGACCTCAAC
GAATCTTCTCTCCCGCACTTTTATTTTGAAGCTCGAAGCTCTCGCGGCGT
GCACGTTTCCCGCTCATTCGTGCCGACGCCTATTTCCTCCACTGCGCCGA
CTTACAGCTGGTCTTCCGAGAAGTTGATTGCTTTTTGGAAGGTATCTATC
CGTCTGCTTGTGCCGGTTCTGTTCACGTAATAGAGTACGTTCTGTAGTGA
TGCTACGTTGGATCGAGCTCGAGTTTTGCGCGAACCTGGATTCCCTTTCA
CACCCTCTGTAAAAATGAATGTTGTGAGTCTTGATCTACCGTACACCGCC
TTAGAAGTCTTGCTGATTCACCGGGCCAATGGATGGAGTTTCTTCCCCAC
CAAAACGTGGTGAACATGATACGGCTCAATGTATGTGTAAGGATATACGG
TATTATGCAGTGCCGGTAGGTGGTACGGTTCGTTGGGTTGGTAAATCACC
CTGCGCCATTTAATTGCATTCGTGACTGTCCTACCCCCTACACGAACACT
GGAGCTTTGGAGAAATAGCATACCAGGCAATGAGGACTGAGGGAGAGATA
GGGTATCACATTGTGCCTGGAAATAAAGGAAATGAAGCGCTCTCTTTTGT
GTGTAACGAGTACCGTTGTCTTCGTCTCCAGGAGGACGGGCTCACGCTTT
TGATGTTTTCAGTCATGCTCAGACGTTCGTACTTCGCTATTAATAGCCTT
TCGAGGACGGAGCTTGGTCGCCTTAAGTACGTAGAAGTATATTATAGGGG
AAGCGCCTCGGTGACACATCCAAAAATAAAAGAGACTAACTCTAGACACA
ACTGTTTGTACAGGGAAGTAGATGTTGAAGAGGCGCGTCAAGCTGACCAG
GTTCTGAGTCATCAAACAGAACTGAGCATCTTCACGTTCGAGAAGCAACC
AACGTCTACACAGACAGTGTAATACTCAAAATAAATCCCATCTCACTGCA
AGCTTTTGTTTTATTTTTGCTTTTCCGAGGAAAAAGGGTTGGAACAACGT
AAACATAATCAATTTCA
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Coding sequence (CDS) from alignment at F-serratus_M_contig153:268270..271486-

>mRNA_F-serratus_M_contig153.3642.1 ID=mRNA_F-serratus_M_contig153.3642.1|Name=mRNA_F-serratus_M_contig153.3642.1|organism=Fucus serratus male|type=CDS|length=924bp|location=Sequence derived from alignment at F-serratus_M_contig153:268270..271486- (Fucus serratus male)
ATGAGAGCTGCTCTTTTGCTCTTGGTGCTGCTACTGTCTGTCTCGGCCAC
AGCGATGGCCGAGCCCAAGGAAAAGATGCCCGAAGAAAAGAAGCTAGAGG
AAGACAATGAGACGGCCGGTCGATTGACCCCCACGAAAATAACCGAGAAA
GGGTGGCAGAGAGGTCCGCTCGTGGAAGGCCCTGTGGCCGGAGGGACAAC
CGATATTACTGGATCCAACGACAAACACCTTGCCGAAGTCAGTCAGATGA
GAGCTGCTCTTTTGCTCTTGGTGCTGCTACTGTCTGTCTCGGCCACAGCG
ATGGCCGAGCCCAAGGAAAAGATGCCCGAAGAAAAGAAGCTAGAGGAAGA
CAATGAGACGGCCGGTCGATTGACCCCCACGAAAATAACCGAGAAAGGGT
GGCAGAGAGGTCCGCTCGTGGAAGGCCCTGTGGCCGGAGGGACAACCGAT
ATTACTGGATCCAACGACAAACACCTTGCCGAAGTCAGTCAGTTCGCTTC
CGACCATCTGGCGGGGGAGAATTCGGGACTACACTACGTGCAGATGAGCG
CGAAAGTTCAGGTGGTTGCCGGGCTCATCTACACGTTGCGCTACAATGGG
AACGACGACGACGGCGTGTGTCAGTTCGCTTCCGACCATCTGGCGGGGGA
GAATTCGGGACTACACTACGTGCAGATGAGCGCGAAAGTTCAGGTGGTTG
CCGGGCTCATCTACACGTTGCGCTACAATGGGAACGACGACGACGGCGTG
TGTCAGGAGGAGCGTGTGATTGTTGTACACGACAAGCCATGGGCAAATGA
ACGTGTCATCAAGAACGATTATAAGGCGATACGTACGTGAGAGGAGCGTG
TGATTGTTGTACACGACAAGCCATGGGCAAATGAACGTGTCATCAAGAAC
GATTATAAGGCGATACGTACGTGA
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