mRNA_F-serratus_M_contig153.3640.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig153.3640.1
Unique NamemRNA_F-serratus_M_contig153.3640.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig153.3640.1 vs. uniprot
Match: A0A6H5L173_9PHAE (FCP1 homology domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L173_9PHAE)

HSP 1 Score: 447 bits (1151), Expect = 1.130e-149
Identity = 278/461 (60.30%), Postives = 310/461 (67.25%), Query Frame = 1
Query:  472 MAGAVAVQVAREDVFESC-------------HLRNDSTTLSQDPTSSQHPSNLESMV--EVRSPSADE------AGTGLNTAGNGNDDRPVAVEAPV--GDDSQAFGDGEGPSGITVARHSRLAPYKPGKMTVVLDMDECLLHSKFHGPGAASEAYRQLEQRPDAVTEVNSFWVALEDGDTAQVNKRPGLDPFLEALARDYNTIVFTAAMPDYAGPVLDYIDPKGTLFHRRLYRSSCRQQVKGAFLKDLSVLGLETTDLTRTVLVDNNPLSFICQPTNGVLVASFYDDPNDTALASVMQLIRHLDHAGDVRPILKDMFRLDTLLAEYRNALFDEDGDADDEAVAVVDVANGT----EG--ETEEVDSLDEENIQASDVDDDASRHPTEEREPCEKEAEVATENAFVFDDGVRNVECAPAAPKDDDDDESVETEPCSEESGECSLGEESLVSGEEMELDLEF 1767
            MAGAV VQVARE+VFE               H R         P ++   ++  + V    RS +  +      AGTG    G  +   P + EA    G  S   G   GP  I VARH+RLAPYKPGKMTVVLDMDECLLHSKFHGPGAASEAYRQLE+RP+AV EVNSFWVAL+DGDTAQVNKRPGLDPFLEALARDYNTIVFTAAMPDYAGPVLDYIDPKGTLFHRRLYRSSCRQ VKGAFLKDLSVLG+E+TD++RTVLVDNNPLSFICQPTNG+LVASFYDDPNDTALASVMQLIRHLD AGDVRPILKDMFRLDTLL EYR ALFD++ DAD +   ++D         EG  E  + +                                         +    +VEC     KDDDDDESV+TE CSE SG+ SLG+ESL S EEMEL+LEF
Sbjct:    1 MAGAVDVQVAREEVFEGFGKHGAAAGAPAQQHQRCGHAGAPPLPAAAAAVADQSAPVVANARSDAVPQGEAHVAAGTG--EPGTSSSLEPSSTEAAAVGGMASDQQGKQVGP--IVVARHTRLAPYKPGKMTVVLDMDECLLHSKFHGPGAASEAYRQLEERPNAVNEVNSFWVALDDGDTAQVNKRPGLDPFLEALARDYNTIVFTAAMPDYAGPVLDYIDPKGTLFHRRLYRSSCRQ-VKGAFLKDLSVLGVESTDMSRTVLVDNNPLSFICQPTNGILVASFYDDPNDTALASVMQLIRHLDQAGDVRPILKDMFRLDTLLGEYRAALFDDEDDADVDVDCILDXXXXXXXLLEGCLEAGQQERTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELQGEDVECL----KDDDDDESVKTEACSEGSGDSSLGDESLTSREEMELELEF 452          
BLAST of mRNA_F-serratus_M_contig153.3640.1 vs. uniprot
Match: D7FM26_ECTSI (Putative nuclear LIM interactor-interacting protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM26_ECTSI)

HSP 1 Score: 413 bits (1062), Expect = 3.700e-138
Identity = 230/329 (69.91%), Postives = 247/329 (75.08%), Query Frame = 1
Query:  793 MTVVLDMDECLLHSKFHGPGAASEAYRQLEQRPDAVTEVNSFWVALEDGDTAQVNKRPGLDPFLEALARDYNTIVFTAAMPDYAGPVLDYIDPKGTLFHRRLYRSSCRQQVKGAFLKDLSVLGLETTDLTRTVLVDNNPLSFICQPTNGVLVASFYDDPNDTALASVMQLIRHLDHAGDVRPILKDMFRLDTLLAEYRNALFDEDGDADDEAVAVVDVANGTEGETEEVDSLDEENIQASDVDDDASRHPTEEREPCEKEAEVATENAFVFDDGVR----NVECAPAAPKDDDDDESVETEPCSEESGECSLGEESLVSGEEMELDLEF 1767
            MTVVLDMDECLLHSKFHGPGAASEAYRQLE+RPDAV EVNSFWVAL+DGDTAQVNKRPGLDPFLEALARDYNTIVFTAAMPDYAGPVLDYIDPKGTLFHRRLYRSSCRQ VKGAFLKDLSVLG+E+TD++RTVLVDNNPLSFICQPTNG+LVASFYDDPNDTALASVMQLIRHLD AGDVRPILKDMFRLDTLL EYR ALFD+D DAD + +                                                      +   D   +    +VEC     KDDDDDESV+TE CSE SG+ SLG+ESL S EEMEL+LEF
Sbjct:    1 MTVVLDMDECLLHSKFHGPGAASEAYRQLEERPDAVNEVNSFWVALDDGDTAQVNKRPGLDPFLEALARDYNTIVFTAAMPDYAGPVLDYIDPKGTLFHRRLYRSSCRQ-VKGAFLKDLSVLGVESTDMSRTVLVDNNPLSFICQPTNGILVASFYDDPNDTALASVMQLIRHLDQAGDVRPILKDMFRLDTLLGEYRTALFDDDDDADVDCILXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSANGDGQQQLQGEDVECL----KDDDDDESVKTEACSEGSGDSSLGDESLTSREEMELELEF 324          
BLAST of mRNA_F-serratus_M_contig153.3640.1 vs. uniprot
Match: A0A836C7A9_9STRA (NLI interacting factor-like phosphatase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7A9_9STRA)

HSP 1 Score: 267 bits (682), Expect = 1.090e-81
Identity = 138/207 (66.67%), Postives = 165/207 (79.71%), Query Frame = 1
Query:  790 KMTVVLDMDECLLHSKFHGPGAASEAYRQLEQRPDAVTEVNSFWVALEDGDTAQVNKRPGLDPFLEALARDYNTIVFTAAMPDYAGPVLDYIDPKGTLFHRRLYRSSCRQQVKGAFLKDLSVLG-LETTDLTRTVLVDNNPLSFICQPTNGVLVASFYDDPNDTALASVMQLIRHLDHAGDVRPILKDMFRLDTLLAEYRNALFDED 1407
            ++TV+LDMDECLLHSKFHG G+    YRQ E+RP+ + EVNSF + L+DG  AQVN RPGL  FLE LA+  + +VFTAAMPDYAGPVLD +DP G L  +RLYRSSCRQ V+GAFLKDLSVLG +      R VL+DNNP SF+CQPTNG+LV SFYDD  DTALASV+QL++HL+HA DVRPIL+DMFRL++LL EYR  LF E+
Sbjct:   28 RLTVILDMDECLLHSKFHGLGSID--YRQQEERPEDIGEVNSFCIPLDDG-VAQVNIRPGLHDFLEELAKTCDVVVFTAAMPDYAGPVLDKLDPTGRLISKRLYRSSCRQ-VRGAFLKDLSVLGPVFDKHPGRCVLLDNNPCSFLCQPTNGILVTSFYDDAEDTALASVLQLVQHLEHAPDVRPILRDMFRLESLLREYRAMLFPEE 230          
BLAST of mRNA_F-serratus_M_contig153.3640.1 vs. uniprot
Match: A0A835Z333_9STRA (NLI interacting factor (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z333_9STRA)

HSP 1 Score: 263 bits (671), Expect = 2.290e-81
Identity = 137/197 (69.54%), Postives = 154/197 (78.17%), Query Frame = 1
Query:  793 MTVVLDMDECLLHSKFHGPGAASEAYRQLEQRPDAVTEVNSFWVALEDGDTAQVNKRPGLDPFLEALARDYNTIVFTAAMPDYAGPVLDYIDPKGTLFHRRLYRSSCRQQVKGAFLKDLSVLGLE-TTDLTRTVLVDNNPLSFICQPTNGVLVASFYDDPNDTALASVMQLIRHLDHAGDVRPILKDMFRLDTLLAE 1380
            +TVVLDMDECLLHSKFHG GA S  YRQ E RP+ V EVNSFW+AL+DG  AQVN RPGL  FLE LA+  + +VFTAAMPDYAGPVLD IDP G L  RRLYR+SCRQ V+G FLKDLS LG    T+  R VL+DNNP SF+CQPTNG+LV SFYDD  DTALA VMQL+R L+   DVRPIL+DMFRL+ LL E
Sbjct:    1 LTVVLDMDECLLHSKFHGAGAVSTTYRQEEDRPETVGEVNSFWLALDDG-VAQVNIRPGLHEFLEQLAQMCDVVVFTAAMPDYAGPVLDRIDPTGKLISRRLYRNSCRQ-VRGVFLKDLSALGSAFATNPGRCVLLDNNPCSFLCQPTNGILVTSFYDDARDTALACVMQLVRLLESVPDVRPILRDMFRLEALLKE 195          
BLAST of mRNA_F-serratus_M_contig153.3640.1 vs. uniprot
Match: A0A836CB86_9STRA (Putative CTD small phosphatase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB86_9STRA)

HSP 1 Score: 206 bits (524), Expect = 2.950e-59
Identity = 109/199 (54.77%), Postives = 138/199 (69.35%), Query Frame = 1
Query:  790 KMTVVLDMDECLLHSKFHGPGAASEAYRQLEQRPDAVTEVNSFWVALEDGDTAQVNKRPGLDPFLEALARDYNTIVFTAAMPDYAGPVLDYIDPKGTLFHRRLYRSSCRQQVKGAFLKDLSVLGLETTDLTRTVLVDNNPLSFICQPTNGVLVASFYDDPNDTALASVMQLIRHLDHAGDVRPILKDMFRLDTLLAEYR 1386
            K+TVVLD+DECL+HS F       + YRQ E RP+ +  V+S  + L   +   VN+RPGL  FLE L+ DY+ +VFTA   +YA  VLD IDP+GT FH RLYR SCRQ     +LKDL     E   L RTVLVDN+PLSFICQP+NG+LV+S+YDDP+D AL+SV++LIRHLD   DVRP L  +F L+ +L EY+
Sbjct:   17 KLTVVLDLDECLVHSVFPN----GDKYRQSEARPENINLVDSMHLVLGGVEPVVVNRRPGLTKFLEQLSVDYHVVVFTAGRKEYAEEVLDAIDPQGTFFHHRLYRCSCRQARGNIYLKDLDRPVGEA--LERTVLVDNSPLSFICQPSNGILVSSWYDDPHDNALSSVLKLIRHLDACDDVRPTLTALFGLEPVLKEYQ 209          
BLAST of mRNA_F-serratus_M_contig153.3640.1 vs. uniprot
Match: A0A662Y5D0_9STRA (FCP1 homology domain-containing protein n=4 Tax=Peronosporaceae TaxID=4777 RepID=A0A662Y5D0_9STRA)

HSP 1 Score: 196 bits (499), Expect = 2.250e-55
Identity = 105/213 (49.30%), Postives = 141/213 (66.20%), Query Frame = 1
Query:  760 HSRLAPYKPGKMTVVLDMDECLLHSKFHGPGAASEAYRQLEQRPDAVTEV-NSFWVALEDGDTAQVNKRPGLDPFLEALARDYNTIVFTAAMPDYAGPVLDYIDPKGTLFHRRLYRSSCRQQVKGAFLKDLSVLGLETTDLTRTVLVDNNPLSFICQPTNGVLVASFYDDPNDTALASVMQLIRHLDHAGDVRPILKDMFRLDTLLAEYRNAL 1395
            H R A     ++ +VLDMDECL+HSKF         YRQ E RP+ +    +SF + ++DG+ A VNKRPGLD FLE  A+ ++  VFTA +  Y  P+LD +DPKG LF  R +R+SC+Q+ KG FLKDLSV+    TDL+R +LVDNNP+SF+ QP+NG+ V SFYDD ND  L S+ +++  L    DVRP L  +FRL  LLAE++  +
Sbjct:   32 HVRAAGAGQERLALVLDMDECLVHSKFQN----EVEYRQSEYRPEELEAYGDSFEIVMDDGERAVVNKRPGLDRFLEEAAKHFDVYVFTAGLEAYGKPILDELDPKGNLFAGRFFRASCQQR-KGMFLKDLSVV---RTDLSRVILVDNNPVSFLLQPSNGIPVPSFYDDVNDRTLDSLTKVLASLQEVDDVRPRLHQLFRLADLLAEHQRVI 236          
BLAST of mRNA_F-serratus_M_contig153.3640.1 vs. uniprot
Match: A0A7S2PH30_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PH30_9STRA)

HSP 1 Score: 196 bits (497), Expect = 4.410e-55
Identity = 106/221 (47.96%), Postives = 143/221 (64.71%), Query Frame = 1
Query:  739 SGITVARHSRLAPY--KPGKMTVVLDMDECLLHSKFHGPGAASEAYRQLEQRPDAVTE--VNSFWVALEDGDTAQVNKRPGLDPFLEALARDYNTIVFTAAMPDYAGPVLDYIDPKGTLFHRRLYRSSCRQQVK-GAFLKDLSVLGLETTDLTRTVLVDNNPLSFICQPTNGVLVASFYDDPNDTALASVMQLIRHLDHAGDVRPILKDMFRLDTLLAEYR 1386
            +G ++ RHSR      +   + +VLDMDECL+HS+F     ++  YRQ E RP A++   V SF + L DGD  QVNKRPGLD FL+ +   + T +FTAAM  YA PVLD +DP+ T+  +R YR SC    + G ++KDLS + L+  D  R VLVDNNPLSF+ QP+NG+LV++FYD P+D  L +V+ L+  L+   DVRP L DMF L   LAE +
Sbjct:   17 NGGSLIRHSRFVGSCRRKSDLVLVLDMDECLIHSQF----LSNTEYRQDEYRPSAISSKSVESFRIELPDGDLVQVNKRPGLDEFLQTVTSKFETHIFTAAMEVYASPVLDSLDPENTMLGKRFYRESCSLNSELGVYVKDLSKI-LQDVDHKRVVLVDNNPLSFLAQPSNGILVSNFYDSPDDITLKAVVDLLERLETKNDVRPTLDDMFGLSAALAELQ 232          
BLAST of mRNA_F-serratus_M_contig153.3640.1 vs. uniprot
Match: A0A3M6VFT3_9STRA (FCP1 homology domain-containing protein n=9 Tax=Peronosporaceae TaxID=4777 RepID=A0A3M6VFT3_9STRA)

HSP 1 Score: 194 bits (493), Expect = 1.640e-54
Identity = 101/203 (49.75%), Postives = 136/203 (67.00%), Query Frame = 1
Query:  790 KMTVVLDMDECLLHSKFHGPGAASEAYRQLEQRPDAVTE-VNSFWVALEDGDTAQVNKRPGLDPFLEALARDYNTIVFTAAMPDYAGPVLDYIDPKGTLFHRRLYRSSCRQQVKGAFLKDLSVLGLETTDLTRTVLVDNNPLSFICQPTNGVLVASFYDDPNDTALASVMQLIRHLDHAGDVRPILKDMFRLDTLLAEYRNAL 1395
            ++ +VLDMDECL+HSKF         YRQ E RP+ + E ++SF + +EDG+ A VNKRPGLD FLE  A+ Y+  VFTA +  Y  P+LD +DPKG LF    +R SC+Q+ KG FLKDLSV+     DL+R +LVDNNP+SF+ QP+NG+ V SFYDD  D  L S+ +++  +    DVRP L  +FRL  LLAE++  +
Sbjct:   40 RIALVLDMDECLVHSKFQN----EVEYRQNEYRPEQLEEYIDSFEIVMEDGERAVVNKRPGLDRFLEEAAKHYDVYVFTAGLEAYGKPILDVLDPKGNLFAGHFFRESCKQR-KGMFLKDLSVI--RDGDLSRVILVDNNPVSFLMQPSNGIPVPSFYDDTKDRTLESLSKVLASMQEVEDVRPRLHQLFRLADLLAEHQRVI 235          
BLAST of mRNA_F-serratus_M_contig153.3640.1 vs. uniprot
Match: H3GXJ8_PHYRM (FCP1 homology domain-containing protein n=12 Tax=Phytophthora TaxID=4783 RepID=H3GXJ8_PHYRM)

HSP 1 Score: 194 bits (493), Expect = 1.640e-54
Identity = 102/203 (50.25%), Postives = 137/203 (67.49%), Query Frame = 1
Query:  790 KMTVVLDMDECLLHSKFHGPGAASEAYRQLEQRPDAVTE-VNSFWVALEDGDTAQVNKRPGLDPFLEALARDYNTIVFTAAMPDYAGPVLDYIDPKGTLFHRRLYRSSCRQQVKGAFLKDLSVLGLETTDLTRTVLVDNNPLSFICQPTNGVLVASFYDDPNDTALASVMQLIRHLDHAGDVRPILKDMFRLDTLLAEYRNAL 1395
            ++ +VLDMDECL+HSKF         YRQ E RP+ + +  +SF + ++DG+ A VNKRPGLD FLE  A+ Y+  VFTA +  Y  P+LD +DPKG LF  R +R SC+Q+ KG FLKDLSV+     DL+R +LVDNNP+SF+ QP+NG+ V SFYDD ND  L S+ +++  L    DVRP L  +FRL  LLAE++  +
Sbjct:   40 RLALVLDMDECLVHSKFQN----EVEYRQSEFRPEQLEDFADSFEIVMDDGERAVVNKRPGLDRFLEEAAKHYDVYVFTAGLEAYGKPILDELDPKGNLFAGRFFRESCQQR-KGMFLKDLSVV--RGGDLSRVILVDNNPVSFLMQPSNGIPVPSFYDDANDRTLESLSKVLASLQEVEDVRPRLHQLFRLADLLAEHQRVI 235          
BLAST of mRNA_F-serratus_M_contig153.3640.1 vs. uniprot
Match: K3WRS1_GLOUD (FCP1 homology domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WRS1_GLOUD)

HSP 1 Score: 192 bits (489), Expect = 1.250e-53
Identity = 103/220 (46.82%), Postives = 144/220 (65.45%), Query Frame = 1
Query:  739 SGITVARHSRLAPYKPGKMTVVLDMDECLLHSKFHGPGAASEAYRQLEQRPDAVTEVN-SFWVALEDGDTAQVNKRPGLDPFLEALARDYNTIVFTAAMPDYAGPVLDYIDPKGTLFHRRLYRSSCRQQVKGAFLKDLSVLGLETTDLTRTVLVDNNPLSFICQPTNGVLVASFYDDPNDTALASVMQLIRHLDHAGDVRPILKDMFRLDTLLAEYRNAL 1395
            SG   A     +P +  ++ +VLDMDECL+HSKF+        YRQ E RP A+ + + SF + ++DG+ A V+KRPGLD FLE  ++ ++  VFTA +  Y  P+LD +DPKGTLF  R +R SC+Q+ KG FLKDL V+     DL++ +LVDNNP+SF+ QP+NG+ V SFYDD ND  L S+ +++  L    DVRP L  +FRL  LLAE++  +
Sbjct:   47 SGCHAASSVPSSPVEEERIALVLDMDECLVHSKFYN----EVEYRQSEYRPTALAQYDDSFEIVMDDGERAIVHKRPGLDKFLEEASKHFDVYVFTAGLEAYGKPILDELDPKGTLFTGRFFRESCQQR-KGMFLKDLRVV---RKDLSKVILVDNNPVSFLMQPSNGIPVPSFYDDANDRTLESLTKVLTSLRELDDVRPRLHQLFRLADLLAEHQRMI 258          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig153.3640.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L173_9PHAE1.130e-14960.30FCP1 homology domain-containing protein n=1 Tax=Ec... [more]
D7FM26_ECTSI3.700e-13869.91Putative nuclear LIM interactor-interacting protei... [more]
A0A836C7A9_9STRA1.090e-8166.67NLI interacting factor-like phosphatase-domain-con... [more]
A0A835Z333_9STRA2.290e-8169.54NLI interacting factor (Fragment) n=1 Tax=Tribonem... [more]
A0A836CB86_9STRA2.950e-5954.77Putative CTD small phosphatase-like protein n=1 Ta... [more]
A0A662Y5D0_9STRA2.250e-5549.30FCP1 homology domain-containing protein n=4 Tax=Pe... [more]
A0A7S2PH30_9STRA4.410e-5547.96Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A3M6VFT3_9STRA1.640e-5449.75FCP1 homology domain-containing protein n=9 Tax=Pe... [more]
H3GXJ8_PHYRM1.640e-5450.25FCP1 homology domain-containing protein n=12 Tax=P... [more]
K3WRS1_GLOUD1.250e-5346.82FCP1 homology domain-containing protein n=1 Tax=Gl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig153contigF-serratus_M_contig153:220350..227392 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score416.4
Seed ortholog evalue1.6e-113
Seed eggNOG ortholog2880.D7FM26
KEGG koko:K15731,ko:K17616
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004721,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019538,GO:0036211,GO:0042578,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0071704,GO:0140096,GO:1901564
EggNOG free text desc.phosphoprotein phosphatase activity
EggNOG OGsCOG5190@1,KOG1605@2759
Ec32 ortholog descriptionNLI interacting factor
Ec32 orthologEc-01_010410.1
EC3.1.3.16
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01009,ko03021
Exons3
Model size1770
Cds size1299
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig153.3640.1prot_F-serratus_M_contig153.3640.1Fucus serratus malepolypeptideF-serratus_M_contig153 220821..227392 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929518.5878952-UTR-F-serratus_M_contig153:220349..2208201622929518.5878952-UTR-F-serratus_M_contig153:220349..220820Fucus serratus maleUTRF-serratus_M_contig153 220350..220820 +
1690962889.2287529-UTR-F-serratus_M_contig153:220349..2208201690962889.2287529-UTR-F-serratus_M_contig153:220349..220820Fucus serratus maleUTRF-serratus_M_contig153 220350..220820 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929518.604658-CDS-F-serratus_M_contig153:220820..2213001622929518.604658-CDS-F-serratus_M_contig153:220820..221300Fucus serratus maleCDSF-serratus_M_contig153 220821..221300 +
1690962889.2453437-CDS-F-serratus_M_contig153:220820..2213001690962889.2453437-CDS-F-serratus_M_contig153:220820..221300Fucus serratus maleCDSF-serratus_M_contig153 220821..221300 +
1622929518.6260118-CDS-F-serratus_M_contig153:222049..2222171622929518.6260118-CDS-F-serratus_M_contig153:222049..222217Fucus serratus maleCDSF-serratus_M_contig153 222050..222217 +
1690962889.2683291-CDS-F-serratus_M_contig153:222049..2222171690962889.2683291-CDS-F-serratus_M_contig153:222049..222217Fucus serratus maleCDSF-serratus_M_contig153 222050..222217 +
1622929518.644415-CDS-F-serratus_M_contig153:226741..2273921622929518.644415-CDS-F-serratus_M_contig153:226741..227392Fucus serratus maleCDSF-serratus_M_contig153 226742..227392 +
1690962889.2794304-CDS-F-serratus_M_contig153:226741..2273921690962889.2794304-CDS-F-serratus_M_contig153:226741..227392Fucus serratus maleCDSF-serratus_M_contig153 226742..227392 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig153.3640.1

>prot_F-serratus_M_contig153.3640.1 ID=prot_F-serratus_M_contig153.3640.1|Name=mRNA_F-serratus_M_contig153.3640.1|organism=Fucus serratus male|type=polypeptide|length=433bp
MAGAVAVQVAREDVFESCHLRNDSTTLSQDPTSSQHPSNLESMVEVRSPS
ADEAGTGLNTAGNGNDDRPVAVEAPVGDDSQAFGDGEGPSGITVARHSRL
APYKPGKMTVVLDMDECLLHSKFHGPGAASEAYRQLEQRPDAVTEVNSFW
VALEDGDTAQVNKRPGLDPFLEALARDYNTIVFTAAMPDYAGPVLDYIDP
KGTLFHRRLYRSSCRQQVKGAFLKDLSVLGLETTDLTRTVLVDNNPLSFI
CQPTNGVLVASFYDDPNDTALASVMQLIRHLDHAGDVRPILKDMFRLDTL
LAEYRNALFDEDGDADDEAVAVVDVANGTEGETEEVDSLDEENIQASDVD
DDASRHPTEEREPCEKEAEVATENAFVFDDGVRNVECAPAAPKDDDDDES
VETEPCSEESGECSLGEESLVSGEEMELDLEF*
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mRNA from alignment at F-serratus_M_contig153:220350..227392+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig153.3640.1 ID=mRNA_F-serratus_M_contig153.3640.1|Name=mRNA_F-serratus_M_contig153.3640.1|organism=Fucus serratus male|type=mRNA|length=7043bp|location=Sequence derived from alignment at F-serratus_M_contig153:220350..227392+ (Fucus serratus male)
GGAAGGGTTAAAACAAAACGCAGAAAAAGCAGAACCCCACTCTCAGAAAA GGCGGCACCAGCGCACAACAAACACCCTCTGCCCACCAACTAGCGGACGG TTCATCTCTTTGCGCACGAGGTGCCAGTCACTTGTTTTCGTGCCCCACAC GCCTCTGGACTGCCTGATACGGCGATTTCCTGAGCGATAACTTGGCGCGA TACCCTCACAGCTTACACGTCGAACTCGGTGAAAAGGAGGAGGCACGAGA GTTCGGGACTTTTTCTCCTCTGAAAAATCTCTGGAGGGAAGCGAACTGAA CGGTCAAGCCTGGTGCTCTCGGGTTGGACGTGGACGTGAACCAGGCCAAA GAAGTATTTTGTCGTTTTAAGGAGTCTGACACTCGACCTTACGTAACTAC GTGCTTTCGGCGCCGGTGCTTTTGTCCCAAACGTTCGGCCCAAACGCTTT CTATACGTTACATTAACTACGATGGCTGGGGCAGTAGCGGTGCAGGTTGC GCGGGAGGATGTGTTCGAAAGCTGCCATCTAAGGAATGATAGCACCACCC TCTCCCAGGACCCGACATCGTCCCAACACCCAAGTAACTTAGAGTCAATG GTAGAAGTTCGAAGCCCTAGCGCCGACGAAGCAGGTACTGGGCTGAACAC GGCGGGAAACGGCAACGACGATCGACCAGTGGCCGTGGAGGCCCCGGTGG GAGATGATTCTCAGGCATTTGGTGACGGAGAGGGTCCGTCGGGGATTACG GTTGCAAGGCACTCAAGACTTGCGCCGTACAAGCCAGGGAAGATGACTGT GGTTTTGGACATGGACGAATGTCTACTGCACAGTAAGTTCCATGGCCCAG GAGCAGCCTCCGAGGCATATCGGCAATTGGAGCAGCGACCGGACGCGGTA ACCGAAGTCAACAGCTTCTGGGTCGCGCTGGAGGATGGCGACACTGCACA GGTGCGTAAAAAAGAACGTCGGTACTTGATTATTCAACCCAATATTATTA CAGTTCTGCAAAGTGTTCTGCTTTCCAAAGAGCCCTTTCACCACACCACG TCCAGTCAACTGTAAAGGAGCTCTTGAATCGAAGTTAAATTCCCTCAGTT ATGACATCACTTGATATCCCTCGAAAACTCGAAGACTCTTGTTGCACGGC GAAGTTTTCATATTTGGTGATTCAGCAGGCTTGTCGACGCGTTTAAAAAA ATTCCGGCTGCATTCACGTGACCAAAGCACTTCAACCAATCCTCCCTCGG CTGTGGTACATCGGGCACGTTGTCGACGGTGGCAACAGTTACCGGGCCAG TTGACAGTTTTCAGTTTTCAATGCCATAAACAGAGTGCCACACAAAAAAA ATATACCAGAAAAGTCTTCGGTTGAAAGCACAGGTTATCATCTTGTACTA CTCCCTACCAGGTACCAGGTACATCAAATGCTCCGATCGAATGGCGACTT TTCGACCTGTGTCAGATTTTACGAACACATCGAAGCCATCCTTCGCAGAA GAGGCTTCACGTTAGCTTCACGCAATGGTTCGCCCTCTAAAATGCCCTCC AACGCAGCTTGGGAAAAGTCGTCTCGTGTCGTTCACCCGTACCTTAAACC CTCTCTCCGTCCGTGAGGATTAGCGTGCGTGGAGAGAGTGACGTCTTATT TTTCAATCTCGAGCATCCTTCTCTCTCTATTGGATGTTACTCTCATATAG GTTAACAAAAGACCGGGACTCGACCCTTTTCTGGAAGCGCTGGCGAGGGA TTACAACACGATAGTTTTTACCGCCGCGATGCCGGACTACGCTGGCCCGG TGCTGGACTACATAGATCCCAAGGGTACCCTATTCCACCGGAGACTTTAT CGCAGTAGCTGTCGGCAGGTGAGGATAAAATACTGTTCCCGTTTTACACT TTTCTTTTTATTTCTCATCCTTTTCTGGCATTTGACCGTTGCTTTCTTTA GAGAAATACGGGAGTATATTTTTACAAGAATCATTACCATTAAATTACCA CATGGGTTTGCGACCATCAGCCCCTTCGCAGTCCTTTACTGATACCCTCT AGAACCGGGAGGTCGAGGGGGGGGGGGGCACAATGGTGGAAGTATTCGAT CGGAGGCTCCTTTATGTCAGACGGTGATAAAAAGCGATGACCACCAGTTC AGCGTATCCACAGCAGTGGCTTTCTCTTTCCATCAAAATAATTGTACTGC ACTATTAATAGTATGGATGTTTACTGCAGACGTTGTTGCCGGCACCAGCA CTGAAATATTCTGTTCGTAAATTTCGACGAGATGTGATCACTAGTGCCGA CTTTTTTAGCCTCTTTTTGACCCAGGACAAAGTGGTTGTGAAATCTTTCT AGCAGTTGGAGTTGAGTACTGTAGTTGTAATCCGCTAAACCTTCAAGAGT CGGCGTTTCGGATGACATCGATGGTCGCTTTCCATGGCCAGAACTCCCTC GACTTTTATAGAGAAAGTTTATCGTCTTTCGGGATATTCTCCAGTCGAGA TCCTGTCCATTCCTTAGCGGAGATTCCTATAATAGAGTACTCGTTTAAAC TTTTCTCCCAAATTCCAGGACCGAATGATTTTTCTGTTACATTATGTACT TGAATAGCAGTGTACTCGAAAAAATgttggggaagttgttggggatttct accagtcagtgcGTTGATGAGAAACTCTTAACTGGCAACCACAACAGTAG CCTGCCTGACTGTACGTCGTGTTTTGGCTTTCCAAGCGTTTTTTTTTCTG TTTCTCATATAGATGGAAATTATTTTGCGTTCGACGTACTAAGTACTATA TACAGTACTTATTATTAATAATGCCAGCACCAGAGCAAAAAGGTCGCACA GGTGCACGTACTGAAGTAAAAGACTTGTACTCGACTGGAACTCATGCATT TCGGTTGTGATTGTGACGTTGACGAGTGGCGTATACCAATACAATACGCA GTACGTGTACCAGAGGCAACCAAACTGTCCCTTGGGGGCAAGATGGGTTG CTTCGCTTTCGTTATTCAGACCTCCTAAAAAATCAAGTTACAGTAGTAGT GAAGTCAGTTCTTTTTAGTAAAGGCCTCTATCCTTCCCCATTCATGTGTG GAAAAATGTCCCGCCGAAGAATATCTTTTTATTATTACTGTCGTTAGTAG CTGAAAGTGTGTTAAAAGAAAAGCCAGAATGCGCCTATACCTTCTGAGCA TCCTCCAGTCAGTCAGCGCTTGCTTGCGCGAAACGTTTGCTCGTGGTGAT GATTCTTTTTCAGACGAAAAAAAAGTCGCGTTTACAGCCGTTAGCCGTTC AAATTTTGAGATTCAATTTATACCGGTGGGGGAGACCTTAACGTTCCGTT GAACACCGTCCGCGTGGGGACCAACCCCGCGGTCTCATACGCTCTGTTCG ATGTGTTCAGATTTTTTCAATGTCACTACTGTTGTCCGCAGCGTAAAACC AGAACACCTCAGGGTTGCCACGGCTATCGTAAGAACACAGATATTAATAC GTTGCATTCTGCTATTAATATAGGGGTGTTGGATAACGAAGCCAAGCGTG CAGCTGCGATGCTGCATTTTTTTTTTATTGTCTTGACCATCTGCAAAAGT CAAGTTGAAATTATCTTGCACCCTATGCCTTGACATACTGTATAAAATAT ATATTTATATTTACATTTATATATATTTCTCTTGCAAGTTAAATAAAAAT ACGAACTGCATGACAGAGCTGTCACTAGAACCTGTGCGTGACAAACTGGT GGTGTAGGTTCAATGGGACTTCCCAACACTGACAATGAATTAATATAACT TATAGAACTACATCTACAGACAAGTATTATTAGTAGTTCCTGTATTATGC GAACACATTTTCAACTTCAATTACAGGCACTTCACAGATTTGTTTCATTT TTCCAATTCCAATTCCAATTCCGTTGAATAACGGCAAGAGTTTCACCCCT CCATCCCTTTGCTACGTACTGATGAATTATATTACCTGTTCTCCGTACAT AATATTTTTTTCTACGGAGTACAGGTACGGTACTTAAGGTGTCTCGCTGG CACTTTGCTCGACATTACGTGTGATACAGCAGTATTTCATATGTTTTGTC AGCACAAGGCGTTTACTGTTGTGCACCCGTTCATCAATTACTGTACGGTG ATGCACAAAGCTGATAGAAGGTTTAGATGCGTTCAGATTTTCTTTAAAGA CTCTTGTTACAGCAGTGTGAGTTTATACAGATAGATCGGTAATGTATGTA GTACTGTAGGTATTTTCAGCACAAGAGCAAAGTTTAGAAAACTGACTGTT GTGGTTGCTGATTCTGTTCGTAACGTTTTCCTTGTCTATCTTCGCTCCCT GAAAATTAAACTCGCCAGACGGAGTCGGCTGCCCTGGCTCACTTTTACAA CCTACCTACGGTATGTAACTGAATCTGGGACATTTTCTGGGAAACATTGT ACAAATTATAGGGATATGTACGAGGCACACCTACCTACCTATGTAACTGA ATCTGGGACTTATTCTGGGAAACATTGTAGAAATTATATTAAAGGGATAT GTACGAGGCAACCACCGGTGAAGATACAAATGTACCGTGCTGTGATAAGG TTAACTATTACACCAATCAGTCCTTATAATAGTGCTACCCGATACTAAAT GTAACTCTGCCGGTACTGTATTTCCTACTGGTATACTCTTTATAATAAAG GTTGTATAACCACGGGCTGATTTTTTACATCAGCTTATGTGAGAATTCAA TCAATCAATCAATTGTGTATAGGACGGCACTACCACCTGTTCTGTTAATA CTGCAATTGTGCTTTACTAATAATAGAGAGCACTCCTGTACTACTATAAT ATAAACTGACTGTGGAATTTTTTAGGTGCTGTCATAAGGTGTCCCCTCCC CTAATAAAATTAGTAGTTTTTTATTGTATTGACATATTCTATCGTGGGAT ATAACGTACTGTACCAGAAAATGAAAAAAACATACAAGAACTGTAGTTAC CATAAAAGTCAAATTAGACGCCGTATCAAACACGGTATGGATAAGCTATT AAATTCTAAGAATATCATTGTTGGGTTATGAGACGTTGATGAATGATAAT TGACAGAACCTTAAATGCAAAAAGAAAAGCGTGATGACTTAAAAGTATAC CAGTATAGCTTTTACGAAAAGTCAAAAACAAAAAATGGACTTTATATGAG GGGCACGCGATATACAAGACGTCCATCACCAATCGTCGCCCGAGTGGTCT AGTAGGTAACCTGCATACCTGCTAGTGCGGAAGTCGTGAGTTCGATTCTT AGCTTAAGCAGAATTTGTGTTTAAAGAAAAATCCGAACAGTTCGATTCTT GAGCATCCCCGTAGGGGAGGAAATGTCAAAACGTTTGTGTTCTTTCTTTC GTAACGGAAAGCGTGGGAACGTGAGTAAGTAAAATTCAACCATTGGTTGA CGAGTTGTAAGAGTGCTGAACTTGCATCGCGATAAAAATTGCAAGGCGTG AACCGGGGAGAGATGGGAAGATCCTTTGTGACCACAGACAGGATGGTAAT TAGAGGTCCATCGGCTAAAAGTGTGATTAAGAAGTAAGAAGAATCAACGA CGTACTTGAATTGTACTGTGGCCACTGCACTGTGCTGCACTTCTTGTTGT CTTCACATTCAAAACCGTCCTGACCTCTATCCAGTATCTTCTCTTTCTTA CTCTTCTAGGCAAAGAAACGAATTCCGTGGTCACAGGCTAACCCAAACTA AGGTACAGAAATAAAATAAAATAAAATAAAAGTACCCAGAGAATGTTCCA ACATTAGCCAAAATAAAATAAAATAAAAATAATAAGTTCAGAAAAACAAG CAGGTTGGGGCAGGAAAAAACCCCAACAAGGAAGTAGAGCCCATCGCTCC AAAGTCGGAAGCTGAGTCTCAACAGAAACAAAAAAATATATAGGGGTACC AATGCAGGTTCAAAACTAAATTTGAAGAGGAAGCTATCCCCCCCTCCCAT ACGATGCCGGGGAGTGTTCATTGTCGGGTTCCCGCCGACCAGGCCATTCC CACTCAACACCTTGGAGCTGTGACAGGGCGAAAACAAAATTAAAATAAAC GACGCACATCATGCAATATAGTACCATATGTCCTATTAATAGACAGTCTC TCCAGTGTTTTCACCAACCCATTGTATCTTTTCAACTCTACTCCTAAGAC TGTTGAGGACCAGCATTCGCCACTACGTTTTTAGGAGTTGTTTTTTAGGT CTTGACCGCAACAGTGTTGAAAAAACTTGAAAATGCCCGTCTTAGACCAC CCAGGATAGTGGGTTGAAATACCTCGCGATCTCTCTGACGCCACAACACC TCCCTTCCGATACAAAAACCACTCGTTCTTCCTTTGTTGGAGCAGGTCAA AGGTGCCTTCTTGAAAGACCTCTCTGTCCTCGGCTTGGAGACAACCGACT TGACCAGAACCGTCCTGGTTGACAACAACCCGCTCTCGTTCATCTGCCAA CCAACGAACGGCGTACTTGTCGCGTCCTTCTACGACGACCCCAACGATAC GGCTCTGGCAAGCGTGATGCAACTCATCCGTCATCTCGACCACGCGGGGG ACGTCCGTCCTATCCTTAAGGACATGTTCCGGCTCGACACCCTGCTCGCG GAGTACCGAAACGCGTTGTTCGACGAGGACGGCGACGCGGACGACGAGGC CGTCGCTGTCGTGGACGTTGCAAACGGTACAGAAGGAGAAACCGAGGAAG TGGACTCGCTCGACGAGGAAAATATTCAAGCCAGCGATGTCGACGACGAC GCGAGTAGGCACCCGACAGAGGAGCGAGAGCCGTGCGAAAAAGAGGCAGA AGTCGCGACTGAGAACGCATTCGTGTTCGACGATGGGGTCAGAAATGTTG AGTGCGCTCCGGCGGCGCCGAAAGACGACGACGACGACGAATCGGTCGAG ACGGAGCCGTGTTCGGAGGAATCCGGCGAGTGTTCGCTAGGGGAAGAGTC GTTGGTGTCTGGCGAGGAGATGGAGTTGGATTTGGAATTCTAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig153:220350..227392+

>mRNA_F-serratus_M_contig153.3640.1 ID=mRNA_F-serratus_M_contig153.3640.1|Name=mRNA_F-serratus_M_contig153.3640.1|organism=Fucus serratus male|type=CDS|length=2598bp|location=Sequence derived from alignment at F-serratus_M_contig153:220350..227392+ (Fucus serratus male)
ATGGCTGGGGCAGTAGCGGTGCAGGTTGCGCGGGAGGATGTGTTCGAAAG
CTGCCATCTAAGGAATGATAGCACCACCCTCTCCCAGGACCCGACATCGT
CCCAACACCCAAGTAACTTAGAGTCAATGGTAGAAGTTCGAAGCCCTAGC
GCCGACGAAGCAGGTACTGGGCTGAACACGGCGGGAAACGGCAACGACGA
TCGACCAGTGGCCGTGGAGGCCCCGGTGGGAGATGATTCTCAGGCATTTG
GTGACGGAGAGGGTCCGTCGGGGATTACGGTTGCAAGGCACTCAAGACTT
GCGCCGTACAAGCCAGGGAAGATGACTGTGGTTTTGGACATGGACGAATG
TCTACTGCACAGTAAGTTCCATGGCCCAGGAGCAGCCTCCGAGGCATATC
GGCAATTGGAGCAGCGACCGGACGCGGTAACCGAAGTCAACAGCTTCTGG
GTCGCGCTGGAGGATGGCGACACTGCACAGATGGCTGGGGCAGTAGCGGT
GCAGGTTGCGCGGGAGGATGTGTTCGAAAGCTGCCATCTAAGGAATGATA
GCACCACCCTCTCCCAGGACCCGACATCGTCCCAACACCCAAGTAACTTA
GAGTCAATGGTAGAAGTTCGAAGCCCTAGCGCCGACGAAGCAGGTACTGG
GCTGAACACGGCGGGAAACGGCAACGACGATCGACCAGTGGCCGTGGAGG
CCCCGGTGGGAGATGATTCTCAGGCATTTGGTGACGGAGAGGGTCCGTCG
GGGATTACGGTTGCAAGGCACTCAAGACTTGCGCCGTACAAGCCAGGGAA
GATGACTGTGGTTTTGGACATGGACGAATGTCTACTGCACAGTAAGTTCC
ATGGCCCAGGAGCAGCCTCCGAGGCATATCGGCAATTGGAGCAGCGACCG
GACGCGGTAACCGAAGTCAACAGCTTCTGGGTCGCGCTGGAGGATGGCGA
CACTGCACAGGTTAACAAAAGACCGGGACTCGACCCTTTTCTGGAAGCGC
TGGCGAGGGATTACAACACGATAGTTTTTACCGCCGCGATGCCGGACTAC
GCTGGCCCGGTGCTGGACTACATAGATCCCAAGGGTACCCTATTCCACCG
GAGACTTTATCGCAGTAGCTGTCGGCAGGTTAACAAAAGACCGGGACTCG
ACCCTTTTCTGGAAGCGCTGGCGAGGGATTACAACACGATAGTTTTTACC
GCCGCGATGCCGGACTACGCTGGCCCGGTGCTGGACTACATAGATCCCAA
GGGTACCCTATTCCACCGGAGACTTTATCGCAGTAGCTGTCGGCAGCAGG
TCAAAGGTGCCTTCTTGAAAGACCTCTCTGTCCTCGGCTTGGAGACAACC
GACTTGACCAGAACCGTCCTGGTTGACAACAACCCGCTCTCGTTCATCTG
CCAACCAACGAACGGCGTACTTGTCGCGTCCTTCTACGACGACCCCAACG
ATACGGCTCTGGCAAGCGTGATGCAACTCATCCGTCATCTCGACCACGCG
GGGGACGTCCGTCCTATCCTTAAGGACATGTTCCGGCTCGACACCCTGCT
CGCGGAGTACCGAAACGCGTTGTTCGACGAGGACGGCGACGCGGACGACG
AGGCCGTCGCTGTCGTGGACGTTGCAAACGGTACAGAAGGAGAAACCGAG
GAAGTGGACTCGCTCGACGAGGAAAATATTCAAGCCAGCGATGTCGACGA
CGACGCGAGTAGGCACCCGACAGAGGAGCGAGAGCCGTGCGAAAAAGAGG
CAGAAGTCGCGACTGAGAACGCATTCGTGTTCGACGATGGGGTCAGAAAT
GTTGAGTGCGCTCCGGCGGCGCCGAAAGACGACGACGACGACGAATCGGT
CGAGACGGAGCCGTGTTCGGAGGAATCCGGCGAGTGTTCGCTAGGGGAAG
AGTCGTTGGTGTCTGGCGAGGAGATGGAGTTGGATTTGGAATTCTAGCAG
GTCAAAGGTGCCTTCTTGAAAGACCTCTCTGTCCTCGGCTTGGAGACAAC
CGACTTGACCAGAACCGTCCTGGTTGACAACAACCCGCTCTCGTTCATCT
GCCAACCAACGAACGGCGTACTTGTCGCGTCCTTCTACGACGACCCCAAC
GATACGGCTCTGGCAAGCGTGATGCAACTCATCCGTCATCTCGACCACGC
GGGGGACGTCCGTCCTATCCTTAAGGACATGTTCCGGCTCGACACCCTGC
TCGCGGAGTACCGAAACGCGTTGTTCGACGAGGACGGCGACGCGGACGAC
GAGGCCGTCGCTGTCGTGGACGTTGCAAACGGTACAGAAGGAGAAACCGA
GGAAGTGGACTCGCTCGACGAGGAAAATATTCAAGCCAGCGATGTCGACG
ACGACGCGAGTAGGCACCCGACAGAGGAGCGAGAGCCGTGCGAAAAAGAG
GCAGAAGTCGCGACTGAGAACGCATTCGTGTTCGACGATGGGGTCAGAAA
TGTTGAGTGCGCTCCGGCGGCGCCGAAAGACGACGACGACGACGAATCGG
TCGAGACGGAGCCGTGTTCGGAGGAATCCGGCGAGTGTTCGCTAGGGGAA
GAGTCGTTGGTGTCTGGCGAGGAGATGGAGTTGGATTTGGAATTCTAG
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