mRNA_F-serratus_M_contig153.3636.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig153.3636.1
Unique NamemRNA_F-serratus_M_contig153.3636.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig153.3636.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig153contigF-serratus_M_contig153:123450..126762 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size2447
Cds size1740
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig153.3636.1prot_F-serratus_M_contig153.3636.1Fucus serratus malepolypeptideF-serratus_M_contig153 123450..126056 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929517.4116206-CDS-F-serratus_M_contig153:123449..1235141622929517.4116206-CDS-F-serratus_M_contig153:123449..123514Fucus serratus maleCDSF-serratus_M_contig153 123450..123514 -
1690962888.8147488-CDS-F-serratus_M_contig153:123449..1235141690962888.8147488-CDS-F-serratus_M_contig153:123449..123514Fucus serratus maleCDSF-serratus_M_contig153 123450..123514 -
1622929517.4583137-CDS-F-serratus_M_contig153:124369..1243851622929517.4583137-CDS-F-serratus_M_contig153:124369..124385Fucus serratus maleCDSF-serratus_M_contig153 124370..124385 -
1690962888.8231454-CDS-F-serratus_M_contig153:124369..1243851690962888.8231454-CDS-F-serratus_M_contig153:124369..124385Fucus serratus maleCDSF-serratus_M_contig153 124370..124385 -
1622929517.4735565-CDS-F-serratus_M_contig153:124397..1260561622929517.4735565-CDS-F-serratus_M_contig153:124397..126056Fucus serratus maleCDSF-serratus_M_contig153 124398..126056 -
1690962888.831301-CDS-F-serratus_M_contig153:124397..1260561690962888.831301-CDS-F-serratus_M_contig153:124397..126056Fucus serratus maleCDSF-serratus_M_contig153 124398..126056 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929517.4891603-UTR-F-serratus_M_contig153:126056..1267621622929517.4891603-UTR-F-serratus_M_contig153:126056..126762Fucus serratus maleUTRF-serratus_M_contig153 126057..126762 -
1690962888.8394458-UTR-F-serratus_M_contig153:126056..1267621690962888.8394458-UTR-F-serratus_M_contig153:126056..126762Fucus serratus maleUTRF-serratus_M_contig153 126057..126762 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig153.3636.1

>prot_F-serratus_M_contig153.3636.1 ID=prot_F-serratus_M_contig153.3636.1|Name=mRNA_F-serratus_M_contig153.3636.1|organism=Fucus serratus male|type=polypeptide|length=580bp
MPCPDEYTSLYEFGKTKIEIHAPKHDRLPVTTPLKPIYGERNATTCHAAA
PRTLRPPFSAHGLFSSRDFPPLAPSRAPSNMDAPTTARSLNSTAPTTARS
LNSTAPTTARSLNSTAAAPTVNATSADTSPVAVRMISGSGDSRHPGLRPV
DPIPTRTPLDLTAPPPHLDHLSLAWDSMSRTTREELHAISLLQVTQGFEL
SRARRLAAADAERQRALEPLLTRAAVLEASDDATRRGILEHDAAAIVAHR
TASTHEGKSLELRTRAKLESAQQTAVQDDMTAVHLHYDSLIAEITNGDPR
SPPSQPPRTSSPPAVFIAPPTAAHDPAPTDTDDRAAAMPSRSAQPRTSDT
AHHAAAPETAPSAASSKKPLPPVPTFAEAAAASPADEEKWTRVNYGKDHR
STPRDPYLGLRISKLKFHNPSFPLGLRAPIKDLATSVNNALFDPANKRPI
LKDALRQATKDDSPFSAKIIRDILHLCDLIRECSHTPAGARWIADTLQSA
APDAAPLATLHNPRLQAATPPPPDIAAGRTLPAGGEMQKGRPSLETPTAT
ALGIAVTIGEDKLRIQRTGRLQGSSRRLRG
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mRNA from alignment at F-serratus_M_contig153:123450..126762-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig153.3636.1 ID=mRNA_F-serratus_M_contig153.3636.1|Name=mRNA_F-serratus_M_contig153.3636.1|organism=Fucus serratus male|type=mRNA|length=3313bp|location=Sequence derived from alignment at F-serratus_M_contig153:123450..126762- (Fucus serratus male)
TTATGATGATAGATGACAGTCCCGTAGCCGTTGACGTATCCTGAAGGGAA
ATACGTACCCGTCAGCGAATGCTAGCAAGTTTTGTATAAACTCCTCAATT
GGTAAATCTGGGCATTTTGGAAGCTGTACTTTCCCCCAGGAATTCAGAGT
TGTTGTATTCCGTTCGCAAGCAATTAAAGAAAAGGTTCACCGTGCACGTC
CAAGAGACTTCCTGGCATCACTACAACGAGGAAGGCTTCAGATCAATTAC
GCGTGAGTTATTCCCTGTTCAGATCTACTCGAGCCGCTCATTATAATATT
GGCGTCTAGACTTTTCCTCCCTCGTCCGACTGGCTGCCAGCTCTGCACAA
GGCAAATTTTGGGAATTCCGTAGCACGCGAGTACAAGCCGTTGCGATTAT
GTCTCGCGTTCCCCGTTCACCTACCTTGCCTTCCGATGACAACGCCCTCC
TTAATTCGCCTGGTGCCGCTTCCCTTGCCGTAGCCGCCCACGCATCTCCC
TCCACTACTGCCCTAAGCACTCCCCACAGACAGCAGTTTTCGATCCGCCC
TTCGAGTACGGGCCCAAATTTTTCGAATCTATTGTCCGAAATTGACAGAG
CCGATGCCGCCAAAACTTCGTCAGACCGTAGCCCCTCTTGACTGATCGTG
CATCCCGATACCTGCGCCGAGACACTTTACGCACGGCTCGTACCCCAAAC
ACTGGCATGCCTTGCCCTGATGAGTACACGAGCTTGTACGAATTCGGAAA
AACCAAAATTGAGATTCACGCGCCTAAACACGACCGTTTACCGGTAACTA
CCCCACTGAAACCAATATATGGCGAACGGAACGCAACCACTTGCCATGCT
GCTGCACCCCGAACATTGCGCCCTCCCTTTTCGGCCCACGGTCTGTTCTC
CTCGCGCGACTTTCCCCCACTTGCCCCTTCACGAGCCCCTTCCAATATGG
ACGCTCCCACTACGGCCCGCTCCCTCAACTCTACTGCGCCCACTACAGCT
CGCTCCCTAAACTCTACTGCGCCCACTACAGCTCGCTCCCTAAACTCTAC
TGCGGCTGCTCCGACGGTCAACGCCACGTCGGCCGACACTTCGCCGGTGG
CCGTCAGAATGATCTCCGGCTCAGGGGACTCCCGCCACCCCGGACTACGC
CCGGTTGACCCCATTCCCACGAGGACACCGTTAGACCTCACGGCGCCACC
TCCTCACCTGGACCATCTGTCGCTAGCATGGGACTCGATGTCCCGGACGA
CAAGAGAGGAACTTCACGCCATCTCCCTGCTCCAAGTCACCCAAGGCTTC
GAGCTCTCCCGTGCCAGAAGACTCGCCGCAGCAGACGCGGAACGCCAGCG
CGCCCTGGAACCCCTTCTCACACGGGCTGCCGTCCTGGAAGCTTCTGACG
ACGCCACGCGCCGTGGGATCCTCGAGCACGACGCCGCCGCCATTGTTGCG
CACCGCACGGCGTCGACCCATGAGGGCAAGTCCCTCGAATTGCGGACGCG
CGCCAAATTGGAATCCGCGCAACAGACCGCCGTCCAGGACGACATGACGG
CCGTCCACTTGCATTATGATTCGTTGATCGCGGAGATCACCAATGGGGAC
CCCCGGTCGCCGCCCTCCCAGCCGCCCCGGACATCATCCCCTCCGGCGGT
TTTCATCGCCCCCCCTACCGCCGCCCATGATCCCGCGCCAACCGACACGG
ACGACCGTGCCGCAGCCATGCCGTCCCGCTCCGCCCAGCCGCGTACCTCC
GACACGGCCCACCACGCAGCCGCCCCTGAGACGGCACCATCTGCCGCCTC
CTCGAAGAAGCCATTGCCGCCGGTACCCACCTTCGCAGAAGCCGCAGCTG
CCTCCCCCGCCGACGAAGAGAAGTGGACTCGGGTCAACTACGGCAAAGAC
CACCGATCGACCCCCCGCGACCCCTATCTTGGCCTACGAATTTCGAAACT
TAAGTTTCACAACCCGTCCTTTCCCCTTGGCCTCCGCGCCCCCATCAAGG
ACCTCGCGACATCGGTCAACAACGCCCTGTTCGACCCGGCCAACAAGAGA
CCCATCTTAAAAGATGCCCTCCGCCAAGCTACAAAGGACGACTCCCCTTT
TTCCGCTAAGATCATAAGGGACATCCTACATCTCTGTGACCTCATCCGAG
AGTGCTCCCACACCCCGGCCGGCGCGCGCTGGATCGCAGATACCCTGCAG
TCGGCCGCTCCCGACGCGGCCCCCCTCGCTACACTCCACAATCCGCGTCT
TCAGGCAGCGACTCCGCCGCCCCCGGACATCGCCGCAGGGAGGACCCTGC
CAGCGGGCGGGGAAATGCAAAAAGGACGACCTTCGCTGGAGACTCCGACA
GCGACCGCTCTCGGCGCCCAACCCAAGATCGCCGTGACTATAGGCAAGTA
ATTCCGAGCGCGCCCCTAATTTACAGCATCTGTCTGACACGATTTCGGCC
GCAACAATAGCTGCCGTCGATCGTCACCTTGCGCAATTGGGCCTCTACCC
AAGTTCGGACCCCGCGGCAATAGCCCCTATAGTCCCCCCATCAGTACCGT
ACACTGCCACGGGCCCCGCTATACCGTACTCTGCGGCGACCTCAGGTCAC
GTACAGTACAATGCGATAGCCCCTGTAGCCCCCCCTTCTGGACAATCGGG
TGCTGTGACCTCAGTCACCCCCCCCCCCCACGTACAGTACTCCGCCGCGA
TTCCCAGTAGTGTACAGTATCCCGCTGCAACATCCAGTGGTGTACAGTAT
CCCGCTGCAACATCCAGTAGTGTACAGTACCGTACTACGGTCCCCACCCA
CGTGCAGCCCCCTTTAACGGCTCCCGCACCAGCAGCCCCCATTTTTGACG
GCCCCCCAGCAGATGAGCGTCTTTTATATGATGATAGCTCCTCCCAAACC
TCACACCCATCGAGTTCCTCTGGTCCCCGCCCGGATTTTGTCGCCAATGT
ACAAGCCGCGTACCGTACCTTAGACATGCGCCGAGTTCCCCGTGTACAAC
CGCTACAATTTCTCCCTTCCGCGGACCGGTCTGCAGCAACACAATTGTTG
ATCCGCTCTATACGCGATGCTCTCTCTGGAATTTTTGACGTTTCCGATCC
TTCTGGGACGGTCACGCTGAACTCCCCCATCTGGATCCCTGGGTGGCACG
CGCCACTTCTTAAACTCGTCAAGGCCTCCATTCACGGTAACCGCGACGAT
ACCCATGACCTGCACCGTCTCGTCGATGACCTCTTTTCGCAATTGCAGGA
GAGGATAAGCTCCGGATCCAGCGGACCGGACGCCTTCAGGGTTCTTCTCG
CAGACTTCGGGGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig153:123450..126762-

>mRNA_F-serratus_M_contig153.3636.1 ID=mRNA_F-serratus_M_contig153.3636.1|Name=mRNA_F-serratus_M_contig153.3636.1|organism=Fucus serratus male|type=CDS|length=3480bp|location=Sequence derived from alignment at F-serratus_M_contig153:123450..126762- (Fucus serratus male)
ATGCCTTGCCCTGATGAGTACACGAGCTTGTACGAATTCGGAAAAACCAA
AATTGAGATTCACGCGCCTAAACACGACCGTTTACCGGTAACTACCCCAC
TGAAACCAATATATGGCGAACGGAACGCAACCACTTGCCATGCTGCTGCA
CCCCGAACATTGCGCCCTCCCTTTTCGGCCCACGGTCTGTTCTCCTCGCG
CGACTTTCCCCCACTTGCCCCTTCACGAGCCCCTTCCAATATGGACGCTC
CCACTACGGCCCGCTCCCTCAACTCTACTGCGCCCACTACAGCTCGCTCC
CTAAACTCTACTGCGCCCACTACAGCTCGCTCCCTAAACTCTACTGCGGC
TGCTCCGACGGTCAACGCCACGTCGGCCGACACTTCGCCGGTGGCCGTCA
GAATGATCTCCGGCTCAGGGGACTCCCGCCACCCCGGACTACGCCCGGTT
GACCCCATTCCCACGAGGACACCGTTAGACCTCACGGCGCCACCTCCTCA
CCTGGACCATCTGTCGCTAGCATGGGACTCGATGTCCCGGACGACAAGAG
AGGAACTTCACGCCATCTCCCTGCTCCAAGTCACCCAAGGCTTCGAGCTC
TCCCGTGCCAGAAGACTCGCCGCAGCAGACGCGGAACGCCAGCGCGCCCT
GGAACCCCTTCTCACACGGGCTGCCGTCCTGGAAGCTTCTGACGACGCCA
CGCGCCGTGGGATCCTCGAGCACGACGCCGCCGCCATTGTTGCGCACCGC
ACGGCGTCGACCCATGAGGGCAAGTCCCTCGAATTGCGGACGCGCGCCAA
ATTGGAATCCGCGCAACAGACCGCCGTCCAGGACGACATGACGGCCGTCC
ACTTGCATTATGATTCGTTGATCGCGGAGATCACCAATGGGGACCCCCGG
TCGCCGCCCTCCCAGCCGCCCCGGACATCATCCCCTCCGGCGGTTTTCAT
CGCCCCCCCTACCGCCGCCCATGATCCCGCGCCAACCGACACGGACGACC
GTGCCGCAGCCATGCCGTCCCGCTCCGCCCAGCCGCGTACCTCCGACACG
GCCCACCACGCAGCCGCCCCTGAGACGGCACCATCTGCCGCCTCCTCGAA
GAAGCCATTGCCGCCGGTACCCACCTTCGCAGAAGCCGCAGCTGCCTCCC
CCGCCGACGAAGAGAAGTGGACTCGGGTCAACTACGGCAAAGACCACCGA
TCGACCCCCCGCGACCCCTATCTTGGCCTACGAATTTCGAAACTTAAGTT
TCACAACCCGTCCTTTCCCCTTGGCCTCCGCGCCCCCATCAAGGACCTCG
CGACATCGGTCAACAACGCCCTGTTCGACCCGGCCAACAAGAGACCCATC
TTAAAAGATGCCCTCCGCCAAGCTACAAAGGACGACTCCCCTTTTTCCGC
TAAGATCATAAGGGACATCCTACATCTCTGTGACCTCATCCGAGAGTGCT
CCCACACCCCGGCCGGCGCGCGCTGGATCGCAGATACCCTGCAGTCGGCC
GCTCCCGACGCGGCCCCCCTCGCTACACTCCACAATCCGCGTCTTCAGGC
AGCGACTCCGCCGCCCCCGGACATCGCCGCAGGGAGGACCCTGCCAGCGG
GCGGGGAAATGCAAAAAGGACGACCTTCGCTGGAGACTCCGACAGCGACC
GCTCTCGGCATGCCTTGCCCTGATGAGTACACGAGCTTGTACGAATTCGG
AAAAACCAAAATTGAGATTCACGCGCCTAAACACGACCGTTTACCGGTAA
CTACCCCACTGAAACCAATATATGGCGAACGGAACGCAACCACTTGCCAT
GCTGCTGCACCCCGAACATTGCGCCCTCCCTTTTCGGCCCACGGTCTGTT
CTCCTCGCGCGACTTTCCCCCACTTGCCCCTTCACGAGCCCCTTCCAATA
TGGACGCTCCCACTACGGCCCGCTCCCTCAACTCTACTGCGCCCACTACA
GCTCGCTCCCTAAACTCTACTGCGCCCACTACAGCTCGCTCCCTAAACTC
TACTGCGGCTGCTCCGACGGTCAACGCCACGTCGGCCGACACTTCGCCGG
TGGCCGTCAGAATGATCTCCGGCTCAGGGGACTCCCGCCACCCCGGACTA
CGCCCGGTTGACCCCATTCCCACGAGGACACCGTTAGACCTCACGGCGCC
ACCTCCTCACCTGGACCATCTGTCGCTAGCATGGGACTCGATGTCCCGGA
CGACAAGAGAGGAACTTCACGCCATCTCCCTGCTCCAAGTCACCCAAGGC
TTCGAGCTCTCCCGTGCCAGAAGACTCGCCGCAGCAGACGCGGAACGCCA
GCGCGCCCTGGAACCCCTTCTCACACGGGCTGCCGTCCTGGAAGCTTCTG
ACGACGCCACGCGCCGTGGGATCCTCGAGCACGACGCCGCCGCCATTGTT
GCGCACCGCACGGCGTCGACCCATGAGGGCAAGTCCCTCGAATTGCGGAC
GCGCGCCAAATTGGAATCCGCGCAACAGACCGCCGTCCAGGACGACATGA
CGGCCGTCCACTTGCATTATGATTCGTTGATCGCGGAGATCACCAATGGG
GACCCCCGGTCGCCGCCCTCCCAGCCGCCCCGGACATCATCCCCTCCGGC
GGTTTTCATCGCCCCCCCTACCGCCGCCCATGATCCCGCGCCAACCGACA
CGGACGACCGTGCCGCAGCCATGCCGTCCCGCTCCGCCCAGCCGCGTACC
TCCGACACGGCCCACCACGCAGCCGCCCCTGAGACGGCACCATCTGCCGC
CTCCTCGAAGAAGCCATTGCCGCCGGTACCCACCTTCGCAGAAGCCGCAG
CTGCCTCCCCCGCCGACGAAGAGAAGTGGACTCGGGTCAACTACGGCAAA
GACCACCGATCGACCCCCCGCGACCCCTATCTTGGCCTACGAATTTCGAA
ACTTAAGTTTCACAACCCGTCCTTTCCCCTTGGCCTCCGCGCCCCCATCA
AGGACCTCGCGACATCGGTCAACAACGCCCTGTTCGACCCGGCCAACAAG
AGACCCATCTTAAAAGATGCCCTCCGCCAAGCTACAAAGGACGACTCCCC
TTTTTCCGCTAAGATCATAAGGGACATCCTACATCTCTGTGACCTCATCC
GAGAGTGCTCCCACACCCCGGCCGGCGCGCGCTGGATCGCAGATACCCTG
CAGTCGGCCGCTCCCGACGCGGCCCCCCTCGCTACACTCCACAATCCGCG
TCTTCAGGCAGCGACTCCGCCGCCCCCGGACATCGCCGCAGGGAGGACCC
TGCCAGCGGGCGGGGAAATGCAAAAAGGACGACCTTCGCTGGAGACTCCG
ACAGCGACCGCTCTCGGCATCGCCGTGACTATAGATCGCCGTGACTATAG
GAGAGGATAAGCTCCGGATCCAGCGGACCGGACGCCTTCAGGGTTCTTCT
CGCAGACTTCGGGGAGAGAGGATAAGCTCCGGATCCAGCGGACCGGACGC
CTTCAGGGTTCTTCTCGCAGACTTCGGGGA
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