mRNA_F-serratus_M_contig1529.3633.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1529.3633.1
Unique NamemRNA_F-serratus_M_contig1529.3633.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1529.3633.1 vs. uniprot
Match: A0A6H5JZ10_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ10_9PHAE)

HSP 1 Score: 204 bits (518), Expect = 2.710e-60
Identity = 88/126 (69.84%), Postives = 107/126 (84.92%), Query Frame = 1
Query:    1 WSKIAHEFLKGSRTGTQCATHWRMVLKPSLLKGVWSPEEDAVIFDCIARGIGDWSEVASFLPKRKARHCRERWETHLDPALSSGI-WSPEEETQLLGAVEAHGTNWNMVARHLSGRTELMVQQQWN 375
            W+KIAH FLKGSRTGTQCATHW+MV+KP+LLKGVWSPEEDAVIFDC+ARG+ DW+EVA+ LPKRK +HCRERW  HLDP L  G  W+  EE +L+ AVEA+GTNW+++ARH  GR+E ++QQ WN
Sbjct:    9 WNKIAHHFLKGSRTGTQCATHWKMVVKPALLKGVWSPEEDAVIFDCVARGVTDWAEVAAALPKRKPKHCRERWSNHLDPNLRKGPGWTAAEEVKLVSAVEANGTNWSLIARHFPGRSEAVIQQHWN 134          
BLAST of mRNA_F-serratus_M_contig1529.3633.1 vs. uniprot
Match: D8LKA8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKA8_ECTSI)

HSP 1 Score: 202 bits (513), Expect = 7.990e-59
Identity = 87/126 (69.05%), Postives = 107/126 (84.92%), Query Frame = 1
Query:    1 WSKIAHEFLKGSRTGTQCATHWRMVLKPSLLKGVWSPEEDAVIFDCIARGIGDWSEVASFLPKRKARHCRERWETHLDPALSSGI-WSPEEETQLLGAVEAHGTNWNMVARHLSGRTELMVQQQWN 375
            W+KIAH FLKGSRTGTQCATHW+MV+KP+LLKGVWS EEDAVIFDC+ARG+ DW+EVA+ LPKRK +HCRERW  HLDP+L  G  W+  EE +L+ AVEA+GTNW+++ARH  GR+E ++QQ WN
Sbjct:  146 WNKIAHHFLKGSRTGTQCATHWKMVVKPALLKGVWSAEEDAVIFDCVARGVTDWTEVAAALPKRKPKHCRERWSNHLDPSLRKGPGWTAAEEVKLVSAVEANGTNWSLIARHFPGRSEAVIQQHWN 271          
BLAST of mRNA_F-serratus_M_contig1529.3633.1 vs. uniprot
Match: A0A2R5GBT4_9STRA (Transcription factor MYB3R-2 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GBT4_9STRA)

HSP 1 Score: 127 bits (319), Expect = 1.130e-31
Identity = 55/126 (43.65%), Postives = 78/126 (61.90%), Query Frame = 1
Query:    1 WSKIAHEFLKGSRTGTQCATHWRMVLKPSLLKGVWSPEEDAVIFDCIARGIGDWSEVASFLPKRKARHCRERWETHLDPALSSGIWSPEEETQLLGAVEAHGTNWNMVARHLSGRTELMVQQQWNA 378
            W +I+ EFL G R+  QC   W+ VLKP L+KG W+ EED  I + I  G+  WSE+A+ +P R  + CRERW  HLDP++  G W+ EE+  L+   E  G  W  +A+ L GR+E  V+ +WN+
Sbjct:   14 WKRISQEFLNGKRSDVQCLHRWQKVLKPGLIKGPWTKEEDDTIMEAIESGVTKWSEIATLIPGRIGKQCRERWFNHLDPSIKKGGWTEEEDRILVEYQEKLGNRWCEIAKVLPGRSENAVKNRWNS 139          
BLAST of mRNA_F-serratus_M_contig1529.3633.1 vs. uniprot
Match: A0A5A8DBZ9_CAFRO (Uncharacterized protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DBZ9_CAFRO)

HSP 1 Score: 125 bits (313), Expect = 1.290e-31
Identity = 56/126 (44.44%), Postives = 79/126 (62.70%), Query Frame = 1
Query:    1 WSKIAHEFLKGSRTGTQCATHWRMVLKPSLLKGVWSPEEDAVIFDCIARGIGDWSEVASFLPKRKARHCRERWETHLDPALSSGIWSPEEETQLLGAVEAHGTNWNMVARHLSGRTELMVQQQWNA 378
            W +I+ E+L+G RT  QC   W+ VL+P L+KG W+ EED VI +CI  GI  WSE++  +P R  + CRERW  HLDP++    WS EE+  L  A  + G  W  +A+ L GR+E  V+ +WN+
Sbjct:   31 WKRISEEYLQGRRTDVQCLHRWQKVLRPGLVKGPWTTEEDQVIVNCINAGITKWSEISERIPGRIGKQCRERWFNHLDPSIKKDPWSAEEDRILEEAQCSIGNKWCEIAKLLPGRSENSVKNRWNS 156          
BLAST of mRNA_F-serratus_M_contig1529.3633.1 vs. uniprot
Match: A0A2R5G768_9STRA (Transcription factor MYB3R-4 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G768_9STRA)

HSP 1 Score: 124 bits (310), Expect = 2.330e-30
Identity = 56/126 (44.44%), Postives = 75/126 (59.52%), Query Frame = 1
Query:    1 WSKIAHEFLKGSRTGTQCATHWRMVLKPSLLKGVWSPEEDAVIFDCIARGIGDWSEVASFLPKRKARHCRERWETHLDPALSSGIWSPEEETQLLGAVEAHGTNWNMVARHLSGRTELMVQQQWNA 378
            W KI+ E+L G R+  QC   W+ VL+P L+KG W+ EED +I  CI R I  WSE+A  +P R  + CRERW  HLDP +    W+ EEE  L+ A    G  W  +A+ L GR E  V+ +WN+
Sbjct:  195 WKKISEEYLGGRRSDVQCLHRWQKVLRPGLVKGPWTEEEDNMIRACIERKITKWSEIAERIPGRIGKQCRERWFNHLDPTIDHSAWTEEEEKVLVTAQATFGNRWCEIAKLLPGRPENAVKNRWNS 320          
BLAST of mRNA_F-serratus_M_contig1529.3633.1 vs. uniprot
Match: A0A2R5GS76_9STRA (Transcription factor MYB3R-2 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GS76_9STRA)

HSP 1 Score: 122 bits (307), Expect = 3.330e-30
Identity = 56/127 (44.09%), Postives = 77/127 (60.63%), Query Frame = 1
Query:    1 WSKIAHEFLKGSRTGTQCATHWRMVLKPSLLKGVWSPEEDAVIFDCIARGIGDWSEVASFLPKRKARHCRERWETHLDPALSSGIWSPEEETQLLGAVEAHGTNWNMVAR-HLSGRTELMVQQQWNA 378
            W +IA E+L  +RT  QC   W+ VL+P L+KG W PEED  I  CI  GI  WSE+A+ +P R  + CRERW  HLDP + +  W+ EE+  L+      G  W+ +A+ +L GR E  V+ +WNA
Sbjct:  156 WKRIASEYLADTRTDVQCLHRWQKVLRPGLVKGPWQPEEDETIRACIRSGITRWSEIATRVPGRIGKQCRERWFNHLDPNIRTDEWTEEEDQLLIEGQSKLGNKWSQIAKIYLPGRPENAVKNRWNA 282          
BLAST of mRNA_F-serratus_M_contig1529.3633.1 vs. uniprot
Match: A0A7S3LND3_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LND3_9STRA)

HSP 1 Score: 118 bits (296), Expect = 4.820e-30
Identity = 52/125 (41.60%), Postives = 75/125 (60.00%), Query Frame = 1
Query:    1 WSKIAHEFLKGSRTGTQCATHWRMVLKPSLLKGVWSPEEDAVIFDCIARGIGDWSEVASFLPKRKARHCRERWETHLDPALSSGIWSPEEETQLLGAVEAHGTNWNMVARHLSGRTELMVQQQWN 375
            W +I+   +   R+  QC   W+ VL+P L+KG W+ EED  +  CI  GI  WSE+AS++P R  + CRERW  HLDP +  G W+ EE+ +L  A   +G  W+ +A  + GRTE  V+ +WN
Sbjct:   32 WKRIS--LVVPGRSDVQCLHRWQKVLRPGLVKGPWTKEEDDTVRRCIETGIKKWSEIASYVPGRIGKQCRERWFNHLDPTILKGSWTKEEDEKLFKAQAEYGNRWSFIATLIPGRTENAVKNRWN 154          
BLAST of mRNA_F-serratus_M_contig1529.3633.1 vs. uniprot
Match: A0A7S1GEG8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GEG8_9STRA)

HSP 1 Score: 113 bits (283), Expect = 4.900e-29
Identity = 59/129 (45.74%), Postives = 74/129 (57.36%), Query Frame = 1
Query:    1 WSKIAHEFLKGSRTGTQCATHWRMVLKPSLLKGVWSPEEDAVIFDCIAR-GIGD--WSEVASFLPKRKARHCRERWETHLDPALSSGIWSPEEETQLLGAVEAHGTNWNMVARHLSGRTELMVQQQWNA 378
            W +IA E L   RT  QC   W  VLKP L+KG W  EED V+ D + + G+G   WS +AS LP R  + CRERW  HLDPA+  G W  EE+  +  A    G  W  +AR L GRTE  V+ +WN+
Sbjct:   34 WKRIA-ETLGHGRTDVQCLHRWNKVLKPGLVKGPWLKEEDDVVRDMVMKYGVGQVRWSVIASKLPGRIGKQCRERWFNHLDPAIKKGGWMEEEDLLIFQAQREVGNKWCEIARMLPGRTENAVKNRWNS 161          
BLAST of mRNA_F-serratus_M_contig1529.3633.1 vs. uniprot
Match: A0A7S0VPJ2_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VPJ2_9CRYP)

HSP 1 Score: 111 bits (278), Expect = 1.930e-28
Identity = 54/127 (42.52%), Postives = 72/127 (56.69%), Query Frame = 1
Query:    1 WSKIAHEFLKGSRTGTQCATHWRMVLKPSLLKGVWSPEEDAVIFDCIAR-GIGDWSEVASFLPKRKARHCRERWETHLDPALSSGIWSPEEETQLLGAVEAHGTNWNMVARHLSGRTELMVQQQWNA 378
            W K+A E LK  RT  QC   W+ VL P L+KG W+ EED  +   + R G   WS +ASFLP R  + CRERW  HL+P +    WS EE+  ++ A   HG  W  +A  L GRT+  ++  WN+
Sbjct:   62 WKKVAEE-LK-FRTDVQCLHRWQKVLNPELIKGPWTKEEDDTVVKLVHRHGPTKWSLIASFLPGRIGKQCRERWHNHLNPDIRKEEWSVEEDCTIIHATRVHGKKWARIANFLPGRTDNAIKNHWNS 186          
BLAST of mRNA_F-serratus_M_contig1529.3633.1 vs. uniprot
Match: D0NJN5_PHYIT (Myb-like DNA-binding protein, putative n=2 Tax=Phytophthora TaxID=4783 RepID=D0NJN5_PHYIT)

HSP 1 Score: 112 bits (281), Expect = 2.340e-28
Identity = 53/126 (42.06%), Postives = 74/126 (58.73%), Query Frame = 1
Query:    1 WSKIAHEFLKGSRTGTQCATHWRMVLKPSLLKGVWSPEEDAVIFDCIARGIGDWSEVASFLPKRKARHCRERWETHLDPALSSGIWSPEEETQLLGAVEAHGTNWNMVARHLSGRTELMVQQQWNA 378
            W  IA E     R  TQC   W  VL P L+KG W PEED ++ + +A G  +W +VA+ +P R ++ CRERW  HLDP++  G +SPEE+  +L A    G  W+ +A  L GRTE  V+ +W +
Sbjct:  105 WKSIAEEV--PGRNHTQCLQRWTKVLAPGLVKGHWRPEEDDLLKELVAEGRKNWGQVATRIPGRTSKQCRERWYNHLDPSIIRGEYSPEEDRMILDAQARLGNRWSAIAAMLPGRTEDAVKIRWKS 228          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1529.3633.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JZ10_9PHAE2.710e-6069.84MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D8LKA8_ECTSI7.990e-5969.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A2R5GBT4_9STRA1.130e-3143.65Transcription factor MYB3R-2 n=1 Tax=Hondaea ferme... [more]
A0A5A8DBZ9_CAFRO1.290e-3144.44Uncharacterized protein n=4 Tax=Cafeteria roenberg... [more]
A0A2R5G768_9STRA2.330e-3044.44Transcription factor MYB3R-4 n=1 Tax=Hondaea ferme... [more]
A0A2R5GS76_9STRA3.330e-3044.09Transcription factor MYB3R-2 n=1 Tax=Hondaea ferme... [more]
A0A7S3LND3_9STRA4.820e-3041.60Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A7S1GEG8_9STRA4.900e-2945.74Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S0VPJ2_9CRYP1.930e-2842.52Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
D0NJN5_PHYIT2.340e-2842.06Myb-like DNA-binding protein, putative n=2 Tax=Phy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1529contigF-serratus_M_contig1529:165077..165454 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score202.6
Seed ortholog evalue1.1e-49
Seed eggNOG ortholog2880.D8LKA8
Preferred nameBAS1
KEGG koko:K09420,ko:K09422,ko:K09423,ko:K21769
KEGG Pathwayko04151,ko04218,ko05166,map04151,map04218,map05166
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0000278,GO:0000280,GO:0000976,GO:0000981,GO:0000988,GO:0000989,GO:0001046,GO:0001047,GO:0001067,GO:0001076,GO:0001134,GO:0001135,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006355,GO:0006357,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007052,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0019219,GO:0019222,GO:0022402,GO:0022607,GO:0030154,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032502,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043565,GO:0044085,GO:0044212,GO:0044424,GO:0044464,GO:0045893,GO:0045935,GO:0045944,GO:0048285,GO:0048518,GO:0048522,GO:0048869,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051225,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0070925,GO:0071840,GO:0080090,GO:0090307,GO:0097159,GO:0140014,GO:0140110,GO:1901363,GO:1902680,GO:1902850,GO:1903047,GO:1903506,GO:1903508,GO:1990837,GO:2000112,GO:2001141
EggNOG free text desc.RNA polymerase II transcription regulator recruiting activity
EggNOG OGsCOG5147@1,KOG0048@2759
Ec32 ortholog descriptionSANT/Myb domain transcription factor
Ec32 orthologEc-01_009570.1
COG Functional cat.ADK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03000
Exons1
Model size378
Cds size378
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929517.1153615-CDS-F-serratus_M_contig1529:165076..1654541622929517.1153615-CDS-F-serratus_M_contig1529:165076..165454Fucus serratus maleCDSF-serratus_M_contig1529 165077..165454 +
1690962888.6609337-CDS-F-serratus_M_contig1529:165076..1654541690962888.6609337-CDS-F-serratus_M_contig1529:165076..165454Fucus serratus maleCDSF-serratus_M_contig1529 165077..165454 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1529.3633.1prot_F-serratus_M_contig1529.3633.1Fucus serratus malepolypeptideF-serratus_M_contig1529 165077..165454 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1529.3633.1

>prot_F-serratus_M_contig1529.3633.1 ID=prot_F-serratus_M_contig1529.3633.1|Name=mRNA_F-serratus_M_contig1529.3633.1|organism=Fucus serratus male|type=polypeptide|length=126bp
WSKIAHEFLKGSRTGTQCATHWRMVLKPSLLKGVWSPEEDAVIFDCIARG
IGDWSEVASFLPKRKARHCRERWETHLDPALSSGIWSPEEETQLLGAVEA
HGTNWNMVARHLSGRTELMVQQQWNA
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mRNA from alignment at F-serratus_M_contig1529:165077..165454+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1529.3633.1 ID=mRNA_F-serratus_M_contig1529.3633.1|Name=mRNA_F-serratus_M_contig1529.3633.1|organism=Fucus serratus male|type=mRNA|length=378bp|location=Sequence derived from alignment at F-serratus_M_contig1529:165077..165454+ (Fucus serratus male)
TGGAGCAAGATCGCCCACGAGTTTTTGAAGGGTTCCCGTACGGGCACTCA ATGCGCTACTCACTGGAGGATGGTATTGAAGCCCTCGCTGCTCAAAGGGG TATGGTCGCCGGAAGAGGATGCCGTAATATTCGACTGCATAGCGCGCGGA ATCGGCGACTGGTCTGAGGTGGCGTCTTTCCTCCCAAAGCGGAAGGCGCG GCATTGCCGCGAGCGTTGGGAAACCCACCTCGATCCGGCGCTGAGTAGTG GAATTTGGTCCCCCGAGGAAGAAACGCAGCTCCTCGGCGCCGTAGAAGCG CACGGCACGAACTGGAACATGGTCGCGCGGCATCTTTCTGGCCGTACCGA GCTGATGGTTCAGCAGCAGTGGAACGCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1529:165077..165454+

>mRNA_F-serratus_M_contig1529.3633.1 ID=mRNA_F-serratus_M_contig1529.3633.1|Name=mRNA_F-serratus_M_contig1529.3633.1|organism=Fucus serratus male|type=CDS|length=756bp|location=Sequence derived from alignment at F-serratus_M_contig1529:165077..165454+ (Fucus serratus male)
TGGAGCAAGATCGCCCACGAGTTTTTGAAGGGTTCCCGTACGGGCACTCA
ATGCGCTACTCACTGGAGGATGGTATTGAAGCCCTCGCTGCTCAAAGGGG
TATGGTCGCCGGAAGAGGATGCCGTAATATTCGACTGCATAGCGCGCGGA
ATCGGCGACTGGTCTGAGGTGGCGTCTTTCCTCCCAAAGCGGAAGGCGCG
GCATTGCCGCGAGCGTTGGGAAACCCACCTCGATCCGGCGCTGAGTAGTG
GAATTTGGTCCCCCGAGGAAGAAACGCAGCTCCTCGGCGCCGTAGAAGCG
CACGGCACGAACTGGAACATGGTCGCGCGGCATCTTTCTGGCCGTACCGA
GCTGATGGTTCAGCAGCAGTGGAACGCGTGGAGCAAGATCGCCCACGAGT
TTTTGAAGGGTTCCCGTACGGGCACTCAATGCGCTACTCACTGGAGGATG
GTATTGAAGCCCTCGCTGCTCAAAGGGGTATGGTCGCCGGAAGAGGATGC
CGTAATATTCGACTGCATAGCGCGCGGAATCGGCGACTGGTCTGAGGTGG
CGTCTTTCCTCCCAAAGCGGAAGGCGCGGCATTGCCGCGAGCGTTGGGAA
ACCCACCTCGATCCGGCGCTGAGTAGTGGAATTTGGTCCCCCGAGGAAGA
AACGCAGCTCCTCGGCGCCGTAGAAGCGCACGGCACGAACTGGAACATGG
TCGCGCGGCATCTTTCTGGCCGTACCGAGCTGATGGTTCAGCAGCAGTGG
AACGCG
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